BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0002.p (146 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum sero... 294 2e-78 ref|YP_001100572.1| ribonuclease H [Herminiimonas arsenicoxydans... 258 2e-67 ref|YP_001352901.1| ribonuclease H [Janthinobacterium sp. Marsei... 258 2e-67 ref|YP_004752122.1| ribonuclease HI [Collimonas fungivorans Ter3... 257 4e-67 gb|AAZ39212.1| RNase H [Janthinobacterium lividum] >gi|118161397... 251 3e-65 ref|ZP_08272590.1| Ribonuclease HI [Oxalobacteraceae bacterium I... 249 1e-64 ref|YP_002006001.1| ribonuclease h [Cupriavidus taiwanensis LMG ... 244 2e-63 ref|YP_584356.1| ribonuclease H [Cupriavidus metallidurans CH34]... 244 4e-63 ref|YP_726923.1| ribonuclease H [Ralstonia eutropha H16] >gi|123... 243 9e-63 ref|YP_004686181.1| ribonuclease H [Cupriavidus necator N-1] >gi... 242 1e-62 >ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1] gb|ADJ64896.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1] Length = 143 Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 143/143 (100%), Positives = 143/143 (100%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR Sbjct: 1 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV Sbjct: 61 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGHAGNERADQLANRGVESI Sbjct: 121 RGHNGHAGNERADQLANRGVESI 143 >ref|YP_001100572.1| ribonuclease H [Herminiimonas arsenicoxydans] sp|A4G7G3.1|RNH_HERAR RecName: Full=Ribonuclease H; Short=RNase H emb|CAL62450.1| Ribonuclease HI (RNase HI) [Herminiimonas arsenicoxydans] Length = 146 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 118/143 (82%), Positives = 133/143 (93%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M+K++I++DGACKGNPGRGGWGALLV G +EKE+FGGEP TTNNRMEL AVI+ALNAL R Sbjct: 1 MEKIDIFTDGACKGNPGRGGWGALLVMGEREKELFGGEPGTTNNRMELKAVIEALNALTR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEV+VHTDSQYVQKGISEWIHGWKARGWKTA++ PVKN DLWQALDAAQ +HQ+EWRWV Sbjct: 61 PCEVIVHTDSQYVQKGISEWIHGWKARGWKTAARAPVKNVDLWQALDAAQARHQIEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGVE++ Sbjct: 121 RGHNGHVGNERADALANRGVETV 143 >ref|YP_001352901.1| ribonuclease H [Janthinobacterium sp. Marseille] sp|A6SXA4.1|RNH_JANMA RecName: Full=Ribonuclease H; Short=RNase H gb|ABR89141.1| ribonuclease HI [Janthinobacterium sp. Marseille] Length = 144 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/141 (86%), Positives = 131/141 (92%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 MDK++IYSDGACKGNPGRGGWGALLV G +EKEIFGGE +TTNNRMEL AVI+ALN L R Sbjct: 1 MDKIDIYSDGACKGNPGRGGWGALLVMGEREKEIFGGELDTTNNRMELKAVIEALNLLTR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTA+K PVKN DLWQALDAAQ +H++EWRWV Sbjct: 61 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDAAQARHKIEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVE 144 RGHNGHAGNERAD LANRGVE Sbjct: 121 RGHNGHAGNERADALANRGVE 141 >ref|YP_004752122.1| ribonuclease HI [Collimonas fungivorans Ter331] gb|AEK61299.1| Ribonuclease HI [Collimonas fungivorans Ter331] Length = 144 Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 120/143 (83%), Positives = 131/143 (91%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 MDKVEIY+DGACKGNPG GGWGALLVA GKEKE+FGGE NTTNNRMEL AVI+AL AL R Sbjct: 1 MDKVEIYADGACKGNPGTGGWGALLVADGKEKELFGGERNTTNNRMELKAVIEALTALTR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEV V+TDSQYVQKGISEWIHGWKARGWKTA++EPVKN DLWQALDAAQ QH++EW+WV Sbjct: 61 PCEVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWKWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGH GH GNERADQLANRGV ++ Sbjct: 121 RGHAGHVGNERADQLANRGVTTV 143 >gb|AAZ39212.1| RNase H [Janthinobacterium lividum] gb|ABK64079.1| putative ribonuclease H [Janthinobacterium lividum] Length = 145 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 118/143 (82%), Positives = 130/143 (90%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 MDKVEIY+DGACKGNPG GGWGAL+VA G +KEI+GGE NTTNNRMEL AVI+AL ALKR Sbjct: 1 MDKVEIYADGACKGNPGTGGWGALMVADGAKKEIYGGELNTTNNRMELKAVIEALTALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC+VV++TDSQYVQKGISEWIHGWKARGWKTA+K PVKN DLWQALD AQ H+VEWRWV Sbjct: 61 PCQVVLYTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDTAQAVHEVEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERADQLAN GVE++ Sbjct: 121 RGHNGHPGNERADQLANLGVETV 143 >ref|ZP_08272590.1| Ribonuclease HI [Oxalobacteraceae bacterium IMCC9480] gb|EGF33943.1| Ribonuclease HI [Oxalobacteraceae bacterium IMCC9480] Length = 144 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/143 (81%), Positives = 131/143 (91%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M+KVEIY+DGACKGNPGRGGWGA LVAG EKE+FGGE +TTNNRMEL AVI+AL AL+R Sbjct: 1 MEKVEIYTDGACKGNPGRGGWGAWLVAGTNEKELFGGERDTTNNRMELKAVIEALTALRR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC+V+VHTDSQYVQKGISEWI+GWK RGWKTA++EPVKN DLWQALD AQQ HQ++WRWV Sbjct: 61 PCDVIVHTDSQYVQKGISEWINGWKKRGWKTAAREPVKNVDLWQALDLAQQMHQIQWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGH+GH GNERAD LANRGV+SI Sbjct: 121 RGHSGHVGNERADVLANRGVDSI 143 >ref|YP_002006001.1| ribonuclease h [Cupriavidus taiwanensis LMG 19424] emb|CAQ69938.1| Ribonuclease H (RNase H) [Cupriavidus taiwanensis LMG 19424] Length = 145 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/143 (81%), Positives = 125/143 (87%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V IYSDGACKGNPGRGGWGA+LVAG EKE+FGGEPNTTNNRME+ AVI+AL ALKR Sbjct: 1 MQEVTIYSDGACKGNPGRGGWGAVLVAGTSEKELFGGEPNTTNNRMEMTAVIEALRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V V+TDSQYVQKGISEW+ GWKARGWKTA K+PVKNADLWQALD Q HQ+ W WV Sbjct: 61 PCVVRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQALDTLAQAHQISWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGVESI Sbjct: 121 RGHNGHPGNERADALANRGVESI 143 >ref|YP_584356.1| ribonuclease H [Cupriavidus metallidurans CH34] sp|Q1LL89.1|RNH_RALME RecName: Full=Ribonuclease H; Short=RNase H gb|ABF09087.1| ribonuclease HI, degrades RNA of DNA-RNA hybrids [Cupriavidus metallidurans CH34] Length = 145 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/143 (81%), Positives = 126/143 (88%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V IYSDGACKGNPG GGWGA+LVAGG EKE+FGGE TTNNRMELMAVI+AL ALKR Sbjct: 1 MQEVTIYSDGACKGNPGPGGWGAVLVAGGHEKELFGGESPTTNNRMELMAVIEALRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V ++TDSQYVQKGISEWIHGWKARGWKTA K+PVKNADLWQALD AQ+ HQ+ W WV Sbjct: 61 PCIVNIYTDSQYVQKGISEWIHGWKARGWKTADKKPVKNADLWQALDEAQKPHQITWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGV SI Sbjct: 121 RGHNGHPGNERADALANRGVASI 143 >ref|YP_726923.1| ribonuclease H [Ralstonia eutropha H16] sp|Q0K8W6.1|RNH_RALEH RecName: Full=Ribonuclease H; Short=RNase H emb|CAJ93555.1| Ribonuclease HI [Ralstonia eutropha H16] Length = 145 Score = 243 bits (619), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 115/143 (80%), Positives = 124/143 (86%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V IYSDGACKGNPGRGGWGA+LVAG EKE+FGGEPNTTNNRME+ AVI+AL ALKR Sbjct: 1 MQEVTIYSDGACKGNPGRGGWGAVLVAGASEKEMFGGEPNTTNNRMEMTAVIEALRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V V+TDSQYVQKGISEW+ GWKARGWKTA K+PVKNADLWQ LD Q HQ+ W WV Sbjct: 61 PCVVRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLAQPHQISWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGVESI Sbjct: 121 RGHNGHPGNERADALANRGVESI 143 >ref|YP_004686181.1| ribonuclease H [Cupriavidus necator N-1] gb|AEI77700.1| ribonuclease H [Cupriavidus necator N-1] Length = 145 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 114/143 (79%), Positives = 124/143 (86%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V IYSDGACKGNPGRGGWGA+L+AG EKE+FGGEPNTTNNRME+ AVI+AL ALKR Sbjct: 1 MQEVTIYSDGACKGNPGRGGWGAVLIAGTSEKELFGGEPNTTNNRMEMTAVIEALRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V V+TDSQYVQKGISEW+ GWKARGWKTA K+PVKNADLWQ LD Q HQ+ W WV Sbjct: 61 PCVVRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLAQPHQISWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGVESI Sbjct: 121 RGHNGHPGNERADALANRGVESI 143