BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0001.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspi... 493 e-138 ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminii... 337 8e-91 ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobact... 334 7e-90 ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthino... 323 1e-86 ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkhold... 322 3e-86 ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkhold... 320 1e-85 ref|YP_004752123.1| DNA polymerase III subunit epsilon [Collimon... 320 1e-85 ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkhold... 319 2e-85 ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkhold... 319 3e-85 ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkhold... 318 3e-85 >ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae SmR1] gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/244 (99%), Positives = 243/244 (99%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT Sbjct: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS Sbjct: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG Sbjct: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEAA 240 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEA Sbjct: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEAT 240 Query: 241 AEAA 244 AEAA Sbjct: 241 AEAA 244 >ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] Length = 234 Score = 337 bits (864), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 157/231 (67%), Positives = 196/231 (84%), Gaps = 1/231 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+RI+EIGCVE+++R+L+G N H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +I EF DY+ GA+++IHNAPFDVGFLDAEL + +P FKDHV ++D+ Sbjct: 61 TEFLSDKPKFAEIVDEFRDYISGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGILDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 LQ AKELHPG+RNSLDALCDRYG+SNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG Sbjct: 121 LQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMDLG 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 ++ S+G LE+ +A++++ A+ EEL HE ++ LDKE +G C+WR Sbjct: 181 GQDADSDGIA-LEVVAIADILLQPATAEELAEHELLMQSLDKEVKGQCLWR 230 >ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 334 bits (857), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 157/232 (67%), Positives = 189/232 (81%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+R++EIGCVE++NR+L+GKN H Y+NPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL DKP F +AAE DY+ GA++IIHNAPFDVGFLDAE L +P F V V+D+ Sbjct: 61 TEFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AKE+HPG+RNSLD+LCDRYG+SNAHR LHGALLDAELLAEVYL+MTRGQNSL+M+L Sbjct: 121 LVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMELD 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRF 232 + E LEL PLA+++V+ AS EELG HE L LDKE RG+ +WR Sbjct: 181 DGDQAGESGAHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWRM 232 >ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] Length = 235 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 160/231 (69%), Positives = 195/231 (84%), Gaps = 1/231 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+RI+EIGCVE++NR+L+G N H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IAAEF DY+ GA +IIHNAPFD+GFLDAEL + P FK+HV +V+D+ Sbjct: 61 TEFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AKE+HPG+RNSLDALCDRYGISNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG Sbjct: 121 LVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDLG 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 A + S+G+ LE+ +A V ++AA+ EEL H ++ LDK+ +G VWR Sbjct: 181 ASDVGSDGQ-VLEVVAIAPVQLLAATAEELAAHAAMVESLDKQVKGQSVWR 230 >ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001] gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001] Length = 244 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 153/238 (64%), Positives = 191/238 (80%), Gaps = 3/238 (1%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQ+ILDTETTGL+ R G+RI+E+GCVE++NR+L+G NLHFYINPERDS+ GALAVHGLT Sbjct: 1 MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IA EF D+++GA +IIHNAPFD+GFLDAE ALLGLPP H +++D+ Sbjct: 61 TEFLSDKPKFAEIADEFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ SL +D+ Sbjct: 121 LARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 181 AEEDVSEGEGKLELAPL--AEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPP 236 E GE L +++V+AAS+EEL H+ VL+ LDK +G+ VWR EP P Sbjct: 181 GESHAG-GEAHAPRVALDSLDLVVIAASDEELAAHQAVLDGLDKAIKGTSVWRLEPAP 237 >ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 244 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/235 (64%), Positives = 197/235 (83%), Gaps = 6/235 (2%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGL+PR+G+R++EIGCVE+LNR+L+G NLH Y+NPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F ++A + D+V+GA++IIHNAPFD+GFLDAE A LGLPPF +H V+D+ Sbjct: 61 TEFLSDKPKFAEVADQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDL- 179 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ+SL +D+ Sbjct: 121 LAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDML 180 Query: 180 ---GAEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 GA+ + G+ ++ LA L ++ VVAAS++EL H+ L++LDK +G+CVWR Sbjct: 181 DDAGADGGTANGQ-RISLASL-DLPVVAASDDELAAHQAQLDELDKSVKGTCVWR 233 >ref|YP_004752123.1| DNA polymerase III subunit epsilon [Collimonas fungivorans Ter331] gb|AEK61300.1| DNA polymerase III epsilon subunit [Collimonas fungivorans Ter331] Length = 247 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 157/232 (67%), Positives = 186/232 (80%), Gaps = 1/232 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR G+R++EIGCVE+LNR+L+G N H YINPERDSEEGALAVHGLT Sbjct: 3 MRQIVLDTETTGLNPRTGDRVIEIGCVELLNRRLTGNNFHRYINPERDSEEGALAVHGLT 62 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 T FL+DKP F +I E +Y RGAQ+IIHNAPFD+GFLDAE LLG F V V+D+ Sbjct: 63 TAFLSDKPKFAEIFDELREYTRGAQVIIHNAPFDLGFLDAEYKLLGKGTFSGDVAGVIDT 122 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDL- 179 L AKE++PG+RNSLDALCDRYGISNAHR LHGALLD+ELLAEVYL+MTRGQNS ++DL Sbjct: 123 LVQAKEMYPGKRNSLDALCDRYGISNAHRTLHGALLDSELLAEVYLAMTRGQNSFSIDLG 182 Query: 180 GAEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 D G LEL PLA ++V A+ EEL HE VLN LDK+A+G+C+WR Sbjct: 183 AGHGDADGGGAALELLPLAGIVVRTANAEELAEHELVLNGLDKDAKGACIWR 234 >ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158] Length = 244 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 151/233 (64%), Positives = 190/233 (81%), Gaps = 2/233 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGL+ R G+RI+EIGCVE+LNR+L+G NLHFY+NPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F ++A + ++VRGA++IIHNAPFD+GFLDAE ALLGLPPF +H V+D+ Sbjct: 61 TEFLSDKPKFAEVADQIREFVRGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ+SL +D+ Sbjct: 121 LVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDML 180 Query: 181 AEEDVSEGEGKLELAPLA--EVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 + G + LA ++ V+AAS+EEL H L++LDK +G+CVWR Sbjct: 181 DDAATVGGAANGQRVSLAALDLPVLAASDEELAAHHAQLDELDKSVKGTCVWR 233 >ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003] gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003] Length = 244 Score = 319 bits (817), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 152/240 (63%), Positives = 193/240 (80%), Gaps = 7/240 (2%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQ+ILDTETTGL+ R G+RILE+GCVE++NR+L+G NLHFYINPERDS+ GALAVHGLT Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IA +F D+++GA +IIHNAPFD+GFLDAE ALLGLPP + +++D+ Sbjct: 61 TEFLSDKPKFAEIADQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ SL +D+ Sbjct: 121 LARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 181 AEEDVSEGEGKLELAPLA----EVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPP 236 E S G+ +A E++V+AAS+EE+ H+ VL+ LDK +G+ VWR EP P Sbjct: 181 GE---SHAGGEAHAPRVAIESLELVVIAASDEEVAAHQAVLDGLDKAIKGTSVWRLEPAP 237 >ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815] gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815] Length = 249 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 153/244 (62%), Positives = 193/244 (79%), Gaps = 1/244 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGL+ R G+RI+EIGCVE++NR+L+G NLHFYINPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IA D+++ A++IIHNAPFD+GFLDAE ALLGLPPF + +V+D+ Sbjct: 61 TEFLSDKPKFAEIADTLRDFIQDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK + PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ SL +D+ Sbjct: 121 LVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 181 AEEDVSE-GEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEA 239 E + G K + E+IV+AA+++EL HE +L+ LDK +G+ VWR P +A Sbjct: 181 GETAADDAGGAKRVMLDTLELIVLAATDDELAEHEALLDGLDKSLKGTSVWRTHPTTEDA 240 Query: 240 AAEA 243 +A A Sbjct: 241 SATA 244