BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0018.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776624.1| hypothetical protein Hsero_3235 [Herbaspiril... 399 e-109 ref|ZP_06842026.1| protein of unknown function DUF1109 [Burkhold... 235 4e-60 ref|ZP_08406913.1| hypothetical protein HGR_13604 [Hylemonella g... 233 1e-59 ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xe... 228 6e-58 ref|YP_586818.1| hypothetical protein Rmet_4687 [Cupriavidus met... 222 3e-56 ref|YP_001888861.1| hypothetical protein Bphyt_5130 [Burkholderi... 222 3e-56 ref|YP_001861153.1| hypothetical protein Bphy_5017 [Burkholderia... 209 2e-52 ref|YP_004350360.1| Putative transmembrane protein [Burkholderia... 204 6e-51 ref|YP_001888874.1| hypothetical protein Bphyt_5143 [Burkholderi... 201 4e-50 ref|YP_001266377.1| hypothetical protein Pput_1032 [Pseudomonas ... 199 3e-49 >ref|YP_003776624.1| hypothetical protein Hsero_3235 [Herbaspirillum seropedicae SmR1] gb|ADJ64716.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF Sbjct: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP Sbjct: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC Sbjct: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW Sbjct: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 >ref|ZP_06842026.1| protein of unknown function DUF1109 [Burkholderia sp. Ch1-1] gb|EFG70251.1| protein of unknown function DUF1109 [Burkholderia sp. Ch1-1] Length = 213 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 122/213 (57%), Positives = 154/213 (72%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKTDD IS++A+GV PVDR K+ A+L G GA L+M + G+R DL + P+F Sbjct: 1 MKTDDFISLLATGVAPVDRYALTKRFGVAMLAGAAGATLIMALVLGIRRDLAQVAVTPIF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 W K+A P + +G+L + RL RPGLR G IA P AVW GA VL++AP RL Sbjct: 61 WAKIALPLCVMIGSLWMSTRLARPGLRTGGSGWLIAAPVAAVWLAGAYVLMAAPGDARLA 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 L++G +WR CPFNIA+LSIP F+ +FWA++G+APTRL LTGA+ GLLAG+ AT+ YCLHC Sbjct: 121 LVLGKTWRVCPFNIAMLSIPGFVAVFWALKGLAPTRLVLTGAVGGLLAGSIATLAYCLHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEMG+PFWGVWY LG+L+PA G LLGPRLLRW Sbjct: 181 PEMGIPFWGVWYVLGMLLPAIVGALLGPRLLRW 213 >ref|ZP_08406913.1| hypothetical protein HGR_13604 [Hylemonella gracilis ATCC 19624] gb|EGI75956.1| hypothetical protein HGR_13604 [Hylemonella gracilis ATCC 19624] Length = 214 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/214 (59%), Positives = 159/214 (74%), Gaps = 1/214 (0%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKT D+IS++A+ V PVDR + K+ A ALL+GG+GA+LLML +GLRPDL ML VPLF Sbjct: 1 MKTKDMISLLAADVAPVDRHVAAKRFAGALLVGGIGAVLLMLLRFGLRPDLQAMLSVPLF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRV-GVRWAGIALPGLAVWAGGALVLLSAPLAQRL 119 WIK+A P L +GAL RL RPG+ V + WA + LP L +W+ VL P +R+ Sbjct: 61 WIKMAVPLALGLGALAAAARLSRPGVPVTALGWAALILPVLLLWSAAVTVLWLTPAPERM 120 Query: 120 PLLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLH 179 LL+G SW+ CPFNIA+LS+P FI + A+RG+APTR R GA+AGLL+G+ AT+VYCLH Sbjct: 121 DLLLGQSWKECPFNIAMLSVPGFIAVMGAMRGLAPTRPRWAGAMAGLLSGSVATLVYCLH 180 Query: 180 CPEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 CPEMGVPFW VWY LG+L+PA G LLGPRLLRW Sbjct: 181 CPEMGVPFWAVWYLLGMLLPALVGALLGPRLLRW 214 >ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xenovorans LB400] gb|ABE30788.1| Putative transmembrane protein DUF1109 [Burkholderia xenovorans LB400] Length = 213 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 124/213 (58%), Positives = 155/213 (72%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKTDD IS++A+GV PVDR K+ A+L G GA L+M + G+R DL + P+F Sbjct: 1 MKTDDFISLLATGVAPVDRYALTKRFGVAVLAGAAGATLIMATVLGIRRDLAEVALTPIF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 W K+A P + +GAL + RL RPG+R G IA P AVW GA VL++AP RL Sbjct: 61 WAKIALPLCVMIGALWMSTRLARPGVRTGGSGWLIAAPVAAVWLAGAYVLMAAPGDARLA 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 L++G +WR CPFNIA+LS+P FI FWA++G+APTRL LTGA+ GLLAG+TAT+ YCLHC Sbjct: 121 LVLGKTWRVCPFNIAMLSVPGFIAAFWALKGLAPTRLALTGAVGGLLAGSTATLAYCLHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEMG+PFWGVWY LG+L+PA AG LLGPRLLRW Sbjct: 181 PEMGIPFWGVWYVLGMLLPAIAGALLGPRLLRW 213 >ref|YP_586818.1| hypothetical protein Rmet_4687 [Cupriavidus metallidurans CH34] gb|ABF11549.1| conserved hypothetical protein; putative membrane protein [Cupriavidus metallidurans CH34] Length = 213 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 124/213 (58%), Positives = 160/213 (75%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKTDDLIS++A+G+ PVD + + +AL G GALLL+ YG+RPD+ +ML P+F Sbjct: 1 MKTDDLISLLATGIRPVDPHIMHRAFVRALCAGAAGALLLLTMTYGVRPDIRVMLVTPIF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 W+K+AFP +LA+GA +VL+RL+ PG +VG RWA +P LAVW G VL + P +RL Sbjct: 61 WLKVAFPLSLAIGAFVVLKRLVVPGAQVGTRWAVPGVPVLAVWIGALAVLANVPATERLS 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 L++G++WR+CPFNI LS+PL + + WAVR MAPT LR A+AGLLAG+ AT+VYCLHC Sbjct: 121 LMLGMTWRTCPFNIVFLSLPLCVALVWAVRQMAPTNLRAASALAGLLAGSVATIVYCLHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEM VPFW +WY G+LIPAA G LLGPRLLRW Sbjct: 181 PEMEVPFWAIWYLAGMLIPAALGWLLGPRLLRW 213 >ref|YP_001888861.1| hypothetical protein Bphyt_5130 [Burkholderia phytofirmans PsJN] gb|ACD19491.1| protein of unknown function DUF1109 [Burkholderia phytofirmans PsJN] Length = 213 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 109/213 (51%), Positives = 148/213 (69%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 M+TDDL+ ++++G+TPV R ++ +L + LGA LM ++G+RPDL +++ P+F Sbjct: 1 MRTDDLVGLLSTGITPVRRGTAARRFGISLPIAMLGATALMAAVFGVRPDLAVVVKTPIF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 W KLA P LA+GAL+ RL RPG +V W +A P L VW ++++A +RLP Sbjct: 61 WEKLALPLCLAIGALIATVRLARPGTKVKAAWPIMATPVLVVWIAAITIVVTAAPEERLP 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 ++G SWRSCPFNI LL+IP FI +FWA +G+APTRLRL GA +GLLA + AT+ YC HC Sbjct: 121 AILGHSWRSCPFNILLLAIPGFIAVFWAGKGLAPTRLRLAGAASGLLASSIATVAYCFHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEM FW VWY G+L+PAA G +LGP LLRW Sbjct: 181 PEMSPAFWSVWYMAGMLLPAALGAVLGPTLLRW 213 >ref|YP_001861153.1| hypothetical protein Bphy_5017 [Burkholderia phymatum STM815] gb|ACC74107.1| protein of unknown function DUF1109 [Burkholderia phymatum STM815] Length = 213 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/213 (53%), Positives = 153/213 (71%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKTDDLI ++++ VT ++R ++ +ALLLGGLG+L+LM ++G+R DL + LF Sbjct: 1 MKTDDLIGLLSNQVTRIERGAVARRFVKALLLGGLGSLVLMSLVFGVRHDLASVARTALF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 W K+A+P +AVGA+ + RL RPG R G WA IALP +AVWA +L R Sbjct: 61 WSKMAYPLAIAVGAMFAVMRLGRPGARAGYSWALIALPFVAVWAASLFLLDGTAPGGRWA 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 L++G +WR+CPFNI LLS+P F +FWAV+ +APT+LRL GA+AGLLA +TAT+VYCLHC Sbjct: 121 LVLGQTWRTCPFNIMLLSLPTFPAVFWAVKSLAPTQLRLAGAVAGLLASSTATVVYCLHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEM FWGVWY +G+L+PA G LGP+LLRW Sbjct: 181 PEMSPAFWGVWYAIGMLVPAGIGAWLGPKLLRW 213 >ref|YP_004350360.1| Putative transmembrane protein [Burkholderia gladioli BSR3] gb|AEA64848.1| Putative transmembrane protein [Burkholderia gladioli BSR3] Length = 213 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 118/213 (55%), Positives = 147/213 (69%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKTD+LISM+A+GVTPVD LP K+ A A+ +G GALLLML + GLR DL + PLF Sbjct: 1 MKTDELISMLATGVTPVDPHLPAKRFATAVAIGAGGALLLMLAVLGLRHDLATVAQTPLF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 W K+A P +A+GAL RL RPG R G +A P VW ++L P RL Sbjct: 61 WAKVALPLAIAIGALRGALRLARPGARAGGAGLLVASPVAVVWIATLVMLALTPAGDRLA 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 +++G +W+ CPF I++LSIP F+ A+R +APTRL L GA GLL+GA AT+VYCLHC Sbjct: 121 MVLGQTWKVCPFAISMLSIPGFVATLAALRSLAPTRLALAGATGGLLSGAVATLVYCLHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEMGV FWGVWY LG+L+P AG LLGPR+LRW Sbjct: 181 PEMGVAFWGVWYLLGMLVPTVAGALLGPRVLRW 213 >ref|YP_001888874.1| hypothetical protein Bphyt_5143 [Burkholderia phytofirmans PsJN] gb|ACD19504.1| protein of unknown function DUF1109 [Burkholderia phytofirmans PsJN] Length = 213 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/213 (59%), Positives = 156/213 (73%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKT+DL+S++A+GV +D L K+ + A+L GG+G+ +LM +YG+RPD+G ++ PLF Sbjct: 1 MKTEDLVSLLAAGVPAIDHNLSAKRFSWAMLCGGVGSTVLMAIVYGVRPDIGAVIKTPLF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 WIKLA P LA ALL RL RPG VG WA +A P L VW ++L AP RLP Sbjct: 61 WIKLALPLCLAFAALLATARLSRPGSAVGRAWAALAAPVLTVWIATLVLLWLAPPDARLP 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 L+MG +WR CP NIALLS+P+FI +FWA+RG+APTRLRL GA GLLAGATA + YC HC Sbjct: 121 LVMGNTWRVCPRNIALLSVPVFITVFWAMRGLAPTRLRLAGAAGGLLAGATAAVAYCFHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEMGVPFW VWY LG+LIP AG LGPRLL+W Sbjct: 181 PEMGVPFWAVWYLLGMLIPTLAGAALGPRLLKW 213 >ref|YP_001266377.1| hypothetical protein Pput_1032 [Pseudomonas putida F1] gb|ABQ77193.1| protein of unknown function DUF1109 [Pseudomonas putida F1] Length = 213 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 114/213 (53%), Positives = 148/213 (69%) Query: 1 MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60 MKTDDLI+++A+G PV R ++MA A+L G ALLL + +YG+R D+ + PLF Sbjct: 1 MKTDDLIALLAAGEGPVPRHAVCRRMAVAVLGGLTAALLLTITLYGVRSDITEVAQTPLF 60 Query: 61 WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120 W K+AFPT+LA+ L + RL RPG + W + LP L VW G A+ + AP+ R Sbjct: 61 WGKVAFPTSLALIGLWLTSRLARPGGKGAAGWKMLGLPLLLVWCGAAVSIAGAPVEARAE 120 Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180 LL G +WR+C NI LLS+P F+ +FWA++G+APTRLR GA GLLAG+TAT+ YCLHC Sbjct: 121 LLFGRTWRTCALNITLLSVPAFVTVFWALKGLAPTRLRQAGAAGGLLAGSTATVAYCLHC 180 Query: 181 PEMGVPFWGVWYFLGILIPAAAGLLLGPRLLRW 213 PEMGVPFWGVWY LG+L+P G GPR+LRW Sbjct: 181 PEMGVPFWGVWYVLGMLLPTVFGAWWGPRMLRW 213