BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0016.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776626.1| hypothetical protein Hsero_3237 [Herbaspiril... 391 e-107 ref|YP_001888857.1| hypothetical protein Bphyt_5126 [Burkholderi... 169 2e-40 ref|ZP_06842026.1| protein of unknown function DUF1109 [Burkhold... 159 3e-37 ref|ZP_08406913.1| hypothetical protein HGR_13604 [Hylemonella g... 156 2e-36 ref|YP_001266377.1| hypothetical protein Pput_1032 [Pseudomonas ... 150 1e-34 ref|YP_004350360.1| Putative transmembrane protein [Burkholderia... 150 2e-34 ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xe... 149 3e-34 ref|YP_001888861.1| hypothetical protein Bphyt_5130 [Burkholderi... 149 3e-34 gb|ADR58727.1| Hypothetical protein, conserved [Pseudomonas puti... 147 1e-33 ref|YP_001861153.1| hypothetical protein Bphy_5017 [Burkholderia... 146 2e-33 >ref|YP_003776626.1| hypothetical protein Hsero_3237 [Herbaspirillum seropedicae SmR1] gb|ADJ64718.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 211/213 (99%), Positives = 211/213 (99%) Query: 6 MLAAGTGDSSCPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW 65 MLAAGTGDSS PGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW Sbjct: 1 MLAAGTGDSSGPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW 60 Query: 66 MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE 125 MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE Sbjct: 61 MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE 120 Query: 126 LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLVYSLYC 185 LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAG AAGLVAGAQGVLVYSLYC Sbjct: 121 LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGAAAGLVAGAQGVLVYSLYC 180 Query: 186 VEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218 VEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW Sbjct: 181 VEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 213 >ref|YP_001888857.1| hypothetical protein Bphyt_5126 [Burkholderia phytofirmans PsJN] gb|ACD19487.1| protein of unknown function DUF1109 [Burkholderia phytofirmans PsJN] Length = 213 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/193 (48%), Positives = 131/193 (67%), Gaps = 1/193 (0%) Query: 26 AAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFWMKVSFPLAALSAGQLAATRL 85 A+ R+ AL+VG+ +A LL +LYG+RSD+ L+ +FW++++FP+ L A A RL Sbjct: 22 ASKRLNRALSVGMASSAALLVVLYGIRSDMPALILTTMFWVRLAFPVTTLIAAMNLAGRL 81 Query: 86 ARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLELLLGSSWEVCSANVALLSLP 145 RPG + L A+ LP ++ LA + PP RL+L+LG++W V +AN+ LLSLP Sbjct: 82 GRPGAPVRLA-WLAVTLPFIIMLLAATFVVFATPPGYRLQLMLGTTWRVTTANIVLLSLP 140 Query: 146 TLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPT 205 +LA ++ L+GLAP + +G AGL+AGAQG+LVYSLYC EM+ PFWGVWYVLGV++ Sbjct: 141 SLAAVMHALKGLAPIRPMLSGTGAGLLAGAQGLLVYSLYCSEMSVPFWGVWYVLGVSITA 200 Query: 206 AAGAWCGPWLLRW 218 A GA GP LRW Sbjct: 201 AIGALIGPLYLRW 213 >ref|ZP_06842026.1| protein of unknown function DUF1109 [Burkholderia sp. Ch1-1] gb|EFG70251.1| protein of unknown function DUF1109 [Burkholderia sp. Ch1-1] Length = 213 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/190 (46%), Positives = 115/190 (60%), Gaps = 1/190 (0%) Query: 29 RMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFWMKVSFPLAALSAGQLAATRLARP 88 R VA+ G GA L++AL+ G+R DL + P+FW K++ PL + +TRLARP Sbjct: 25 RFGVAMLAGAAGATLIMALVLGIRRDLAQVAVTPIFWAKIALPLCVMIGSLWMSTRLARP 84 Query: 89 GMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLELLLGSSWEVCSANVALLSLPTLA 148 G+R G G + P +WLAG L AP RL L+LG +W VC N+A+LS+P Sbjct: 85 GLRTG-GSGWLIAAPVAAVWLAGAYVLMAAPGDARLALVLGKTWRVCPFNIAMLSIPGFV 143 Query: 149 TMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPTAAG 208 + W L+GLAPT+L G GL+AG+ L Y L+C EM PFWGVWYVLG+ LP G Sbjct: 144 AVFWALKGLAPTRLVLTGAVGGLLAGSIATLAYCLHCPEMGIPFWGVWYVLGMLLPAIVG 203 Query: 209 AWCGPWLLRW 218 A GP LLRW Sbjct: 204 ALLGPRLLRW 213 >ref|ZP_08406913.1| hypothetical protein HGR_13604 [Hylemonella gracilis ATCC 19624] gb|EGI75956.1| hypothetical protein HGR_13604 [Hylemonella gracilis ATCC 19624] Length = 214 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 137/217 (63%), Gaps = 7/217 (3%) Query: 2 ELVNMLAAGTGDSSCPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQ 61 +++++LAA P R +A A R A AL VG +GA LL+ L +G+R DL+ +L Sbjct: 5 DMISLLAADVA----PVDRHVA---AKRFAGALLVGGIGAVLLMLLRFGLRPDLQAMLSV 57 Query: 62 PLFWMKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPS 121 PLFW+K++ PLA AA RL+RPG+ + AAL+LP +LW A L L P Sbjct: 58 PLFWIKMAVPLALGLGALAAAARLSRPGVPVTALGWAALILPVLLLWSAAVTVLWLTPAP 117 Query: 122 QRLELLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLVY 181 +R++LLLG SW+ C N+A+LS+P ++ +RGLAPT+ R AG AGL++G+ LVY Sbjct: 118 ERMDLLLGQSWKECPFNIAMLSVPGFIAVMGAMRGLAPTRPRWAGAMAGLLSGSVATLVY 177 Query: 182 SLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218 L+C EM PFW VWY+LG+ LP GA GP LLRW Sbjct: 178 CLHCPEMGVPFWAVWYLLGMLLPALVGALLGPRLLRW 214 >ref|YP_001266377.1| hypothetical protein Pput_1032 [Pseudomonas putida F1] gb|ABQ77193.1| protein of unknown function DUF1109 [Pseudomonas putida F1] Length = 213 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/218 (48%), Positives = 133/218 (61%), Gaps = 10/218 (4%) Query: 2 ELVNMLAAGTGDSSCPGQRSLARNAAAR-MAVALAVGLMGAALLLALLYGVRSDLRTLLQ 60 +L+ +LAAG G + R+A R MAVA+ GL A LL LYGVRSD+ + Q Sbjct: 5 DLIALLAAGEGP--------VPRHAVCRRMAVAVLGGLTAALLLTITLYGVRSDITEVAQ 56 Query: 61 QPLFWMKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPP 120 PLFW KV+FP + G +RLARPG + G L LP ++W V +A AP Sbjct: 57 TPLFWGKVAFPTSLALIGLWLTSRLARPGGK-GAAGWKMLGLPLLLVWCGAAVSIAGAPV 115 Query: 121 SQRLELLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLV 180 R ELL G +W C+ N+ LLS+P T+ W L+GLAPT+LR AG A GL+AG+ + Sbjct: 116 EARAELLFGRTWRTCALNITLLSVPAFVTVFWALKGLAPTRLRQAGAAGGLLAGSTATVA 175 Query: 181 YSLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218 Y L+C EM PFWGVWYVLG+ LPT GAW GP +LRW Sbjct: 176 YCLHCPEMGVPFWGVWYVLGMLLPTVFGAWWGPRMLRW 213 >ref|YP_004350360.1| Putative transmembrane protein [Burkholderia gladioli BSR3] gb|AEA64848.1| Putative transmembrane protein [Burkholderia gladioli BSR3] Length = 213 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/221 (46%), Positives = 131/221 (59%), Gaps = 16/221 (7%) Query: 2 ELVNMLAAGTG--DSSCPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLL 59 EL++MLA G D P A R A A+A+G GA LL+ + G+R DL T+ Sbjct: 5 ELISMLATGVTPVDPHLP---------AKRFATAVAIGAGGALLLMLAVLGLRHDLATVA 55 Query: 60 QQPLFWMKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLL--PPCVLWLAGGVWLAL 117 Q PLFW KV+ PLA A RLARPG R G A LL+ P V+W+A V LAL Sbjct: 56 QTPLFWAKVALPLAIAIGALRGALRLARPGARAG---GAGLLVASPVAVVWIATLVMLAL 112 Query: 118 APPSQRLELLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQG 177 P RL ++LG +W+VC +++LS+P L LR LAPT+L AG GL++GA Sbjct: 113 TPAGDRLAMVLGQTWKVCPFAISMLSIPGFVATLAALRSLAPTRLALAGATGGLLSGAVA 172 Query: 178 VLVYSLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218 LVY L+C EM FWGVWY+LG+ +PT AGA GP +LRW Sbjct: 173 TLVYCLHCPEMGVAFWGVWYLLGMLVPTVAGALLGPRVLRW 213 >ref|YP_558840.1| hypothetical protein Bxe_A2181 [Burkholderia xenovorans LB400] gb|ABE30788.1| Putative transmembrane protein DUF1109 [Burkholderia xenovorans LB400] Length = 213 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/176 (47%), Positives = 107/176 (60%), Gaps = 1/176 (0%) Query: 43 LLLALLYGVRSDLRTLLQQPLFWMKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLL 102 L++A + G+R DL + P+FW K++ PL + +TRLARPG+R G G + Sbjct: 39 LIMATVLGIRRDLAEVALTPIFWAKIALPLCVMIGALWMSTRLARPGVRTG-GSGWLIAA 97 Query: 103 PPCVLWLAGGVWLALAPPSQRLELLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQL 162 P +WLAG L AP RL L+LG +W VC N+A+LS+P W L+GLAPT+L Sbjct: 98 PVAAVWLAGAYVLMAAPGDARLALVLGKTWRVCPFNIAMLSVPGFIAAFWALKGLAPTRL 157 Query: 163 RAAGGAAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218 G GL+AG+ L Y L+C EM PFWGVWYVLG+ LP AGA GP LLRW Sbjct: 158 ALTGAVGGLLAGSTATLAYCLHCPEMGIPFWGVWYVLGMLLPAIAGALLGPRLLRW 213 >ref|YP_001888861.1| hypothetical protein Bphyt_5130 [Burkholderia phytofirmans PsJN] gb|ACD19491.1| protein of unknown function DUF1109 [Burkholderia phytofirmans PsJN] Length = 213 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 10/218 (4%) Query: 2 ELVNMLAAGTGDSSCPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQ 61 +LV +L+ G P +R AA R ++L + ++GA L+A ++GVR DL +++ Sbjct: 5 DLVGLLSTGI----TPVRRG---TAARRFGISLPIAMLGATALMAAVFGVRPDLAVVVKT 57 Query: 62 PLFWMKVSFPLAALSAGQLAATRLARPGMRIGLG-PAAALLLPPCVLWLAGGVWLALAPP 120 P+FW K++ PL +A RLARPG ++ P A P V+W+A + A P Sbjct: 58 PIFWEKLALPLCLAIGALIATVRLARPGTKVKAAWPIMAT--PVLVVWIAAITIVVTAAP 115 Query: 121 SQRLELLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLV 180 +RL +LG SW C N+ LL++P + W +GLAPT+LR AG A+GL+A + + Sbjct: 116 EERLPAILGHSWRSCPFNILLLAIPGFIAVFWAGKGLAPTRLRLAGAASGLLASSIATVA 175 Query: 181 YSLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218 Y +C EM+P FW VWY+ G+ LP A GA GP LLRW Sbjct: 176 YCFHCPEMSPAFWSVWYMAGMLLPAALGAVLGPTLLRW 213 >gb|ADR58727.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 213 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/218 (48%), Positives = 135/218 (61%), Gaps = 10/218 (4%) Query: 2 ELVNMLAAGTGDSSCPGQRSLARNAAAR-MAVALAVGLMGAALLLALLYGVRSDLRTLLQ 60 +L+ +LAAG G + R+A +R MAVA+ GL A LL LYGVRSD+ + Q Sbjct: 5 DLIALLAAGEG--------PVPRHAVSRRMAVAVLGGLTAALLLTITLYGVRSDITEVAQ 56 Query: 61 QPLFWMKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPP 120 PLFW KV+FP + G +RLARPG + G L LP ++W V +A AP Sbjct: 57 TPLFWGKVAFPTSLALIGLWLTSRLARPGGK-GAAGWKMLGLPLLLVWCGAAVSIAGAPV 115 Query: 121 SQRLELLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLV 180 R ELL G +W C+ N+ALLS+P T+ W L+GLAPT+LR AG A GL+AG+ + Sbjct: 116 DARAELLFGRTWRTCALNIALLSVPAFVTVFWALKGLAPTRLRLAGAAGGLLAGSSATVA 175 Query: 181 YSLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 218 Y L+C EM PFWGVWYVLG+ +PT GAW GP +LRW Sbjct: 176 YCLHCPEMGVPFWGVWYVLGMLVPTVFGAWWGPRMLRW 213 >ref|YP_001861153.1| hypothetical protein Bphy_5017 [Burkholderia phymatum STM815] gb|ACC74107.1| protein of unknown function DUF1109 [Burkholderia phymatum STM815] Length = 213 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 120/198 (60%), Gaps = 2/198 (1%) Query: 22 LARNAAARMAV-ALAVGLMGAALLLALLYGVRSDLRTLLQQPLFWMKVSFPLAALSAGQL 80 + R A AR V AL +G +G+ +L++L++GVR DL ++ + LFW K+++PLA Sbjct: 17 IERGAVARRFVKALLLGGLGSLVLMSLVFGVRHDLASVARTALFWSKMAYPLAIAVGAMF 76 Query: 81 AATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLELLLGSSWEVCSANVA 140 A RL RPG R G A + LP +W A L P R L+LG +W C N+ Sbjct: 77 AVMRLGRPGARAGYS-WALIALPFVAVWAASLFLLDGTAPGGRWALVLGQTWRTCPFNIM 135 Query: 141 LLSLPTLATMLWFLRGLAPTQLRAAGGAAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLG 200 LLSLPT + W ++ LAPTQLR AG AGL+A + +VY L+C EM+P FWGVWY +G Sbjct: 136 LLSLPTFPAVFWAVKSLAPTQLRLAGAVAGLLASSTATVVYCLHCPEMSPAFWGVWYAIG 195 Query: 201 VALPTAAGAWCGPWLLRW 218 + +P GAW GP LLRW Sbjct: 196 MLVPAGIGAWLGPKLLRW 213