BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0013.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776629.1| hypothetical protein Hsero_3240 [Herbaspiril... 489 e-136 ref|YP_001352616.1| hypothetical protein mma_0926 [Janthinobacte... 214 1e-53 ref|ZP_08406908.1| hypothetical protein HGR_13579 [Hylemonella g... 192 4e-47 ref|YP_586814.1| Thioredoxin-like_fold protein [Cupriavidus meta... 186 2e-45 ref|YP_001749058.1| hypothetical protein PputW619_2189 [Pseudomo... 172 5e-41 ref|YP_002948135.1| hypothetical protein Vapar_6306 [Variovorax ... 170 2e-40 ref|YP_608822.1| hypothetical protein PSEEN3276 [Pseudomonas ent... 155 4e-36 ref|NP_743152.1| hypothetical protein PP_0991 [Pseudomonas putid... 154 2e-35 ref|YP_001266373.1| hypothetical protein Pput_1028 [Pseudomonas ... 152 6e-35 gb|ADR58723.1| Hypothetical protein, conserved [Pseudomonas puti... 150 1e-34 >ref|YP_003776629.1| hypothetical protein Hsero_3240 [Herbaspirillum seropedicae SmR1] gb|ADJ64721.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/251 (96%), Positives = 242/251 (96%) Query: 1 MNAHATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRL 60 MNA ATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTV RL Sbjct: 1 MNAPATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVRRL 60 Query: 61 VGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTES 120 VGS WMESAALQFARHHLPRQASLI YGEGF+ FL TVEAV ELPYLPGVAALDRCWTES Sbjct: 61 VGSAWMESAALQFARHHLPRQASLIAYGEGFSEFLCTVEAVRELPYLPGVAALDRCWTES 120 Query: 121 HLAADQPMLAVAALHIALEAGQDVTLVPHASSRWHHDMQHPVYTIWSANRREDGQAELAP 180 HLAADQPMLAVAALHIALEAGQDVTLVPHASSRWHHDMQHPVYTIWSANR EDGQAELAP Sbjct: 121 HLAADQPMLAVAALHIALEAGQDVTLVPHASSRWHHDMQHPVYTIWSANRSEDGQAELAP 180 Query: 181 EWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIATMLGQ 240 EWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDG SIARAAGQALEHEPDLDIATMLGQ Sbjct: 181 EWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGFSIARAAGQALEHEPDLDIATMLGQ 240 Query: 241 LIQADAFTSFY 251 LIQADAFTSFY Sbjct: 241 LIQADAFTSFY 251 >ref|YP_001352616.1| hypothetical protein mma_0926 [Janthinobacterium sp. Marseille] gb|ABR91394.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 257 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 120/251 (47%), Positives = 147/251 (58%), Gaps = 4/251 (1%) Query: 1 MNAHATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRL 60 MN R+ D F+QAI D ++AAL+ QP FA+YRNTI KGC+DAL ANYPTV RL Sbjct: 1 MNNTLERFQDDFVQAIYGDLGADSSIAALVVQPGFAIYRNTIIKGCIDALQANYPTVERL 60 Query: 61 VGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTES 120 VG+ W +AA + R P SL+ YGE FA FL E ELPYL VA LDR W +S Sbjct: 61 VGTEWFRAAAAIYVRETRPTNVSLMEYGETFADFLVQFEPAKELPYLANVARLDRFWVKS 120 Query: 121 HLAADQPMLAVAALHI--ALEAGQDVTLVPHASSRWHHDMQHPVYTIWSANRREDGQAEL 178 H A D+ + +AL E GQ V L S+ W P+YTIWS NR+ + A+ Sbjct: 121 HTALDEESIDPSALGKLPPEELGQAV-LRTLVSAHWIWFDTQPIYTIWSINRQGETLAD- 178 Query: 179 APEWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIATML 238 EW G+GALL R V W+ L GAC FLDAC G + +AA A+E +P LDIA ML Sbjct: 179 NIEWIGQGALLVRDDGVVTWRSLEQGACAFLDACAIGMPLEQAANAAIEAQPSLDIARML 238 Query: 239 GQLIQADAFTS 249 L+ A F S Sbjct: 239 SDLLTAGVFAS 249 >ref|ZP_08406908.1| hypothetical protein HGR_13579 [Hylemonella gracilis ATCC 19624] gb|EGI75951.1| hypothetical protein HGR_13579 [Hylemonella gracilis ATCC 19624] Length = 272 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 117/249 (46%), Positives = 145/249 (58%), Gaps = 7/249 (2%) Query: 7 RYYDAFLQAILEGHS---NDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRLVGS 63 R+ + FL A+ + S +V+ L QP FAVYRNTI KGC+DAL ANYPTV RLVGS Sbjct: 21 RFQNDFLLALYQPDSVRVAPTSVSKLATQPGFAVYRNTIIKGCIDALEANYPTVARLVGS 80 Query: 64 TWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTESHLA 123 W +AAL + R P L+ YG FA FL LPYLPGVA LDR WTE+H+A Sbjct: 81 AWFRAAALPYVRATPPSSVMLMEYGGDFAEFLAGFTPARALPYLPGVARLDRLWTEAHVA 140 Query: 124 ADQPMLAVAAL-HIALEAGQDVTLVPHASSRWHHDMQHPVYTIWSANRREDGQAELAPEW 182 AD P L L + E + L PH ++RW PVY +W ANR E A+ P W Sbjct: 141 ADTPALDADTLAALPAETLGQLRLRPHPATRWAWHPDQPVYALWCANREERALAQDLP-W 199 Query: 183 RGEGALLTRP--HAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIATMLGQ 240 +GALLTR V+WQ SLG C FLDAC ++A AA AL+ +P+LD+ +L Sbjct: 200 TPDGALLTRGAYDGSVRWQAASLGVCAFLDACSADLTLAGAAQAALQAQPNLDLTRVLAD 259 Query: 241 LIQADAFTS 249 LI ADA + Sbjct: 260 LITADALVA 268 >ref|YP_586814.1| Thioredoxin-like_fold protein [Cupriavidus metallidurans CH34] gb|ABF11545.1| Thioredoxin-like_fold protein [Cupriavidus metallidurans CH34] Length = 258 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 121/257 (47%), Positives = 142/257 (55%), Gaps = 10/257 (3%) Query: 1 MNAHATRYYDAFLQAILEGHSND---DAVAALLAQPAFAVYRNTIFKGCVDALVANYPTV 57 MNA+ + D FL+AIL + L QP F VYRNT+ KGCVDAL AN+PTV Sbjct: 1 MNANGHHFQDDFLRAILAPPGIAPPWTPITPLTQQPGFKVYRNTVLKGCVDALAANFPTV 60 Query: 58 HRLVGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCW 117 RLVG W +AAL PR LI YG+ FA FL E + LPYLP VA LDR W Sbjct: 61 LRLVGEDWFRAAALIHVCAEPPRSVCLIEYGQEFADFLSGFEPAAALPYLPDVARLDRLW 120 Query: 118 TESHLAADQPMLAVAALHIALEAGQ--DVTLVPHASSRWHHDMQHPVYTIWSANRRE-DG 174 TESHLAAD AA L G L P AS RW + P +TIW ANR + D Sbjct: 121 TESHLAADD-EALDAAALATLNGGDLLGAALRPCASVRWRW-FETPAFTIWRANREQRDL 178 Query: 175 QAELAPEWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDI 234 EL EW GEGALLTRP V WQ + G C FLDAC G ++ A+ A+ EP +DI Sbjct: 179 DGEL--EWIGEGALLTRPEGAVVWQHATQGMCAFLDACAAGANLQIASQSAMVAEPGIDI 236 Query: 235 ATMLGQLIQADAFTSFY 251 A +L L+ A F + Sbjct: 237 ARLLATLLGARVFADIH 253 >ref|YP_001749058.1| hypothetical protein PputW619_2189 [Pseudomonas putida W619] gb|ACA72689.1| conserved hypothetical protein [Pseudomonas putida W619] Length = 251 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 107/250 (42%), Positives = 139/250 (55%), Gaps = 8/250 (3%) Query: 1 MNAHATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRL 60 MN ++ DAF+ A+ + + L QPAFAVYRNT+ GCVDAL AN+P+V L Sbjct: 1 MNLSLGQFQDAFIDALYLRPA--PLLQNLTCQPAFAVYRNTVMAGCVDALRANFPSVETL 58 Query: 61 VGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTES 120 VG+ WM+ AA +A+H P A LI YG FA FL+ +A LPYL VA LD W E Sbjct: 59 VGADWMQQAAAAYAKHTPPDDARLIRYGATFAAFLQDSQASHGLPYLADVARLDWHWCEV 118 Query: 121 HLAADQPMLAVAALHIALEAGQDVT---LVPHASSRWHHDMQHPVYTIWSANRREDGQAE 177 A +QP LA+A L A D+ L P + RW HP ++W +R + Sbjct: 119 FSAIEQPCLALADL--AGMTASDLGGSHLRPRQNVRWQWFDAHPALSLWRCSREGLPWPQ 176 Query: 178 LAPEWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIATM 237 P W EGALL+ V QPL G C FLDAC G S+ A+ AL+ +PDLD ++ Sbjct: 177 SQP-WVAEGALLSADQHGVNHQPLEAGGCMFLDACAAGHSLESASQLALQRQPDLDFTSL 235 Query: 238 LGQLIQADAF 247 LG+L+QA F Sbjct: 236 LGRLMQARVF 245 >ref|YP_002948135.1| hypothetical protein Vapar_6306 [Variovorax paradoxus S110] gb|ACS22869.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 262 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/252 (45%), Positives = 141/252 (55%), Gaps = 9/252 (3%) Query: 1 MNAHATRYYDAFLQAIL-EGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHR 59 MNA ++ AF QA+ + AV AL QPAFAVYRNT+ K C+DAL AN+PTV + Sbjct: 1 MNAPRDQFQQAFAQALFAPSKAAHPAVRALAMQPAFAVYRNTVMKACIDALQANFPTVAQ 60 Query: 60 LVGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTE 119 LVG W +AA + P L+ YG GF GFLR E +EL YLPGVA LD W E Sbjct: 61 LVGEEWFRAAAALYVAADPPSDGRLLHYGTGFPGFLRGFEPAAELVYLPGVAQLDALWRE 120 Query: 120 SHLAADQPMLAVAALHIALEAGQDV---TLVPHASSRWHHDMQHPVYTIWSANRREDGQA 176 +H A D A A IA Q + L PH ++RW + PVY+IW +RR Sbjct: 121 AHAAHD--APAADAAWIARRTPQQMAALALAPHPAARWAWFDEQPVYSIWERHRRPGAVG 178 Query: 177 -ELAPEWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIA 235 EL WRGEGALLTRP V W ++ C FLDAC G S+A AA L +P DI+ Sbjct: 179 DELI--WRGEGALLTRPGDTVSWHEITQAGCAFLDACASGASLAEAAEHVLAADPQADIS 236 Query: 236 TMLGQLIQADAF 247 M L++A AF Sbjct: 237 AMFAALLRAGAF 248 >ref|YP_608822.1| hypothetical protein PSEEN3276 [Pseudomonas entomophila L48] emb|CAK16031.1| conserved hypothetical protein [Pseudomonas entomophila L48] Length = 251 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 104/252 (41%), Positives = 134/252 (53%), Gaps = 12/252 (4%) Query: 1 MNAHATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRL 60 MN ++ AF+ A+ + +AAL Q AFAVYRNT+ GCVDAL AN+P+V L Sbjct: 1 MNLSLGQFQAAFVDALYLRPAPQ--LAALTEQAAFAVYRNTVLAGCVDALRANFPSVETL 58 Query: 61 VGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTES 120 VG WM AA +A+ P LI YG F FL ++A L YL VA LD W E+ Sbjct: 59 VGPEWMHDAAAAYAQQSPPCDPRLIHYGAAFPAFLEDLQAFHGLVYLADVARLDFAWGEA 118 Query: 121 HLAADQPMLAVAALHIALEAGQDVT---LVPHASSRWHHDMQHPVYTIWSANRREDGQAE 177 A D P L +A L A D+ L P AS RW HP Y++W +R Sbjct: 119 FSAPDDPCLQLADL--AGMTASDLARSHLRPRASVRWQWFDAHPAYSLWRHSRE---HLP 173 Query: 178 LAPE--WRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIA 235 P+ W GEGAL + A V Q LSLG C FLDAC G + +A+ A + +P+LD Sbjct: 174 WPPDHAWIGEGALFSGDCAGVTHQALSLGGCAFLDACAAGQPLEQASLHAEQSQPNLDFN 233 Query: 236 TMLGQLIQADAF 247 +LG+L+QA F Sbjct: 234 DLLGRLLQAQVF 245 >ref|NP_743152.1| hypothetical protein PP_0991 [Pseudomonas putida KT2440] gb|AAN66616.1|AE016289_4 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 257 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 130/251 (51%), Gaps = 4/251 (1%) Query: 1 MNAHATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRL 60 MN ++ AF++A+ + +A + Q AFAVYRNT+ GCVDAL AN+P+V L Sbjct: 1 MNLSLGQFQQAFIEALYSRPAPQ--LAGVTEQAAFAVYRNTVLAGCVDALRANFPSVCTL 58 Query: 61 VGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTES 120 VG WM+ A +AR P LI YG F FL +++ +PYL VA LD WTE+ Sbjct: 59 VGRAWMDETAAIYARQFPPSDPRLICYGATFPDFLEDIQSQHAVPYLAEVARLDLRWTEA 118 Query: 121 HLAADQPMLAVAALHIALEAGQD-VTLVPHASSRWHHDMQHPVYTIWSANRREDGQAELA 179 A + L + L + D L P AS+RW+ HPVYT+W R + + Sbjct: 119 FSAPYETCLNLVELAGMTPSDLDHGCLHPRASARWYWCEAHPVYTLWRCAREQVAWPDDQ 178 Query: 180 PEWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIATMLG 239 P W GEG L V QPL G FL AC G S+ +A+ A E DLD MLG Sbjct: 179 P-WVGEGVLFVGTADGVCHQPLGKGGHAFLKACAAGQSLMQASDLARHAETDLDFTEMLG 237 Query: 240 QLIQADAFTSF 250 +L+ A AF S Sbjct: 238 RLMTAQAFRSL 248 >ref|YP_001266373.1| hypothetical protein Pput_1028 [Pseudomonas putida F1] gb|ABQ77189.1| hypothetical protein Pput_1028 [Pseudomonas putida F1] Length = 257 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 97/248 (39%), Positives = 130/248 (52%), Gaps = 4/248 (1%) Query: 1 MNAHATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRL 60 MN ++ AF++A+ + + ++ + Q AFAVYRNT+ GCVDAL AN+P+V L Sbjct: 1 MNLSLGQFQQAFIEALYSRPAPE--LSGVTEQAAFAVYRNTVLAGCVDALRANFPSVCTL 58 Query: 61 VGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTES 120 VG WM+ A +AR P LI YG F FL +++ +PYL VA LD WTE+ Sbjct: 59 VGRAWMDETAAIYARQFPPSDPRLICYGATFPDFLEDIQSQHAVPYLADVARLDLHWTEA 118 Query: 121 HLAADQPMLAVAALHIALEAGQD-VTLVPHASSRWHHDMQHPVYTIWSANRREDGQAELA 179 A + L + L + D L P AS+RW+ HPVYT+W R + + Sbjct: 119 FSAPYETCLNLVDLAGMTPSDLDHGCLPPRASARWYWCEAHPVYTLWRCAREQVAWPDDQ 178 Query: 180 PEWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIATMLG 239 P W GEG L V QPL G FL AC G S+ +A+ A E DLD MLG Sbjct: 179 P-WVGEGVLFVGTADGVCHQPLGKGGHAFLRACAAGQSLMQASELARHAETDLDFTEMLG 237 Query: 240 QLIQADAF 247 +L+ A AF Sbjct: 238 RLMTAQAF 245 >gb|ADR58723.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 257 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 129/248 (52%), Gaps = 4/248 (1%) Query: 1 MNAHATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVHRL 60 MN ++ AF++A+ + ++ + Q AFAVYRNT+ GCVDAL AN+P+V L Sbjct: 1 MNLSLGQFQQAFIEALYSRPAPQ--LSGVTEQAAFAVYRNTVLAGCVDALRANFPSVCTL 58 Query: 61 VGSTWMESAALQFARHHLPRQASLIGYGEGFAGFLRTVEAVSELPYLPGVAALDRCWTES 120 VG WM+ A +AR P LI YG F FL +++ +PYL VA LD WTE+ Sbjct: 59 VGRAWMDETAAVYARQFPPSDPRLICYGATFPDFLEDIQSQHAVPYLAEVARLDLRWTEA 118 Query: 121 HLAADQPMLAVAALHIALEAGQD-VTLVPHASSRWHHDMQHPVYTIWSANRREDGQAELA 179 A + L + L + D L P AS+RW+ HPVY++W R + + Sbjct: 119 FSAPYETCLNLVELAGMTPSDLDHGCLHPRASARWYWCEAHPVYSLWRCAREQVAWPDDQ 178 Query: 180 PEWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGCSIARAAGQALEHEPDLDIATMLG 239 P W GEG L V QPL G FL AC G S+ +A+ A E DLD MLG Sbjct: 179 P-WVGEGVLFVGSADGVCHQPLGKGGHAFLKACAAGQSLMQASDLARHAETDLDFTEMLG 237 Query: 240 QLIQADAF 247 +L+ A AF Sbjct: 238 RLMTAQAF 245