BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0006.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776636.1| hypothetical protein Hsero_3247 [Herbaspiril...   223   9e-57
ref|YP_001354333.1| hypothetical protein mma_2643 [Janthinobacte...    95   4e-18
ref|YP_002027711.1| hypothetical protein Smal_1323 [Stenotrophom...    64   6e-09

>ref|YP_003776636.1| hypothetical protein Hsero_3247 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64728.1| hypothetical protein Hsero_3247 [Herbaspirillum seropedicae SmR1]
          Length = 120

 Score =  223 bits (567), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%)

Query: 1   MTLSGFLLALGLAYCAWSALALAMDRHYADVHGRGAEPAPALRQRLRWLGALALLASLAV 60
           MTLSGFLLALGLAYCAWSALALAMDRHYADVHGRGAEPAPALRQRLRWLGALALLASLAV
Sbjct: 1   MTLSGFLLALGLAYCAWSALALAMDRHYADVHGRGAEPAPALRQRLRWLGALALLASLAV 60

Query: 61  AIGMQGWSIGVVGGIGVLTLAGILQVLSLSYWPARTPWLARRILCGLPLLLLLWWLERSL 120
           AIGMQGWSIGVVGGIGVLTLAGILQVLSLSYWPARTPWLARRILC LPLLLLLWWLERSL
Sbjct: 61  AIGMQGWSIGVVGGIGVLTLAGILQVLSLSYWPARTPWLARRILCALPLLLLLWWLERSL 120


>ref|YP_001354333.1| hypothetical protein mma_2643 [Janthinobacterium sp. Marseille]
 gb|ABR90738.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 115

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 74/112 (66%), Gaps = 1/112 (0%)

Query: 5   GFLLALGLAYCAWSALALAMDRHYADVHGRGAEPAPALRQRLRWLGALALLASLAVAIGM 64
           GF+ AL L+Y  W+AL+L MDRHYAD+HGRG EP    R   R LG LALL + A++I +
Sbjct: 3   GFIAALALSYGGWTALSLGMDRHYADIHGRGKEPQQRERNLYRMLGTLALLVTYAISIQL 62

Query: 65  QGWSIGVVGGIGVLTLAGILQVLSLSYWPARTPWLARRILCGLPLLLLLWWL 116
           QGW++G V  +G +T+  +L VL L+Y P RT  +  ++  GL +LL   WL
Sbjct: 63  QGWTVGSVLCLGTMTVGALLLVLLLTYAPQRTVLMG-KVATGLAVLLGAVWL 113


>ref|YP_002027711.1| hypothetical protein Smal_1323 [Stenotrophomonas maltophilia
           R551-3]
 gb|ACF51028.1| conserved hypothetical protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 109

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 3/94 (3%)

Query: 7   LLALGLAYCAWSALALAMDRHYADVHGRGAEPAPALRQRLRWLGALALLASLAVAIGMQG 66
           LLAL L++ A++AL+LAM++H  D+HG+ A  APA R + R LG   L  + A+ +   G
Sbjct: 3   LLALTLSFSAFTALSLAMEKHQHDLHGKAAA-APARRTQWRVLGWALLTVAFALCVVDHG 61

Query: 67  WSIGVVGGIGVLTLAGILQVLSLSYWPARTPWLA 100
           W++G V  +GV+T+ G+  VLS   +P R  W+A
Sbjct: 62  WAMGPVLWLGVMTVGGV--VLSFGLYPYRPKWIA 93