BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0005.p (533 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776637.1| iron-regulated membrane protein [Herbaspiril... 1060 0.0 ref|YP_001354334.1| hypothetical protein mma_2644 [Janthinobacte... 629 e-178 ref|YP_728289.1| uncharacterized iron-regulated membrane protein... 603 e-170 ref|YP_583261.1| hypothetical protein Rmet_1106 [Cupriavidus met... 581 e-163 ref|YP_001796567.1| hypothetical protein RALTA_B0126 [Cupriavidu... 576 e-162 ref|YP_001971404.1| putative transmembrane PepSY domain-containi... 498 e-139 ref|YP_004791873.1| PepSY-associated TM helix domain-containing ... 498 e-138 ref|ZP_05134598.1| PepSY-associated TM helix [Stenotrophomonas s... 498 e-138 ref|YP_002027712.1| hypothetical protein Smal_1324 [Stenotrophom... 497 e-138 ref|YP_004038861.1| pepsy-associated tm helix domain-containing ... 479 e-133 >ref|YP_003776637.1| iron-regulated membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64729.1| iron-regulated membrane protein [Herbaspirillum seropedicae SmR1] Length = 546 Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 528/533 (99%), Positives = 530/533 (99%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL Sbjct: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 Query: 61 AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120 AVERAIAHLQQQAPQAERWFISLPS+RSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT Sbjct: 61 AVERAIAHLQQQAPQAERWFISLPSARSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120 Query: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD Sbjct: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180 Query: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA Sbjct: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240 Query: 241 FFEEVFPNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTR 300 FFEEVFPNVAGRGKAAGQA PLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTR Sbjct: 241 FFEEVFPNVAGRGKAAGQAAPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTR 300 Query: 301 QKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLC 360 QKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLC Sbjct: 301 QKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLC 360 Query: 361 GLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFW 420 GLSGYLMVASGALLWAVKTRQK+AKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFW Sbjct: 361 GLSGYLMVASGALLWAVKTRQKEAKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFW 420 Query: 421 ANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIVVLNIF 480 ANRLLPLEM QRPQAEINVFFIAWAVAAVLAQLRPGLAMWR QLGAGALLFAGIVVLNIF Sbjct: 421 ANRLLPLEMTQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRVQLGAGALLFAGIVVLNIF 480 Query: 481 TTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAAAV 533 TTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAAAV Sbjct: 481 TTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAAAV 533 >ref|YP_001354334.1| hypothetical protein mma_2644 [Janthinobacterium sp. Marseille] gb|ABR90254.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 543 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 320/531 (60%), Positives = 390/531 (73%), Gaps = 6/531 (1%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 MKEG RQSMAWLHTWSGLLVCW+L LVF G+ASYF+DEI+ WM PELHA PVP Sbjct: 1 MKEGFRQSMAWLHTWSGLLVCWVLFLVFTAGTASYFRDEITLWMKPELHAAAATPVPAAQ 60 Query: 61 AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120 A++ A+ L+++A A RWFI+LP R+ A+ V WI P P R + ++ Sbjct: 61 AIDHAVRMLEKEAAGASRWFITLPDERNQALNVTWIGQPE---PGKKGRGKLERAQLNPA 117 Query: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180 TG+++A VRETRGGEF+YRLH+DLHYMP WARWI+ A+FMLVAIVSGVITHKRIFKD Sbjct: 118 TGERLAEVRETRGGEFIYRLHYDLHYMPAIWARWIIGFCAMFMLVAIVSGVITHKRIFKD 177 Query: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240 FFTFR KGQRSWLDAHNA AVLALP+HLMITYTGLVTLMF+ MP+GVQ+AY KG E A Sbjct: 178 FFTFRPKKGQRSWLDAHNAVAVLALPYHLMITYTGLVTLMFLYMPFGVQSAY--KGDEKA 235 Query: 241 FFEEVFPNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTR 300 F E F + K A +A PL IGP++ QA++HW G ++ VT+N+PGDA AT+ +TR Sbjct: 236 FTAEAFRQAENK-KPANKAAPLAPIGPMLVQAEKHWNGGQVSRVTVNNPGDANATIQITR 294 Query: 301 QKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLC 360 + LS + ++ FDGVSG +S+G++ S R VLYGLH+ FA+P LR LFFLC Sbjct: 295 EPETKLSNTRQSMQFDGVSGAFISSIGDETSTAVEARGVLYGLHVADFANPLLRTLFFLC 354 Query: 361 GLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFW 420 GL+G MVA+GALLWAVK RQ AK +A+G R G+GLRLVD LNIGAIAGLPIA A+YFW Sbjct: 355 GLAGCAMVATGALLWAVKKRQSYAKVLAKGGRVGFGLRLVDGLNIGAIAGLPIALAAYFW 414 Query: 421 ANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIVVLNIF 480 ANRLL + + +R + EI+ FFIAW AAVLA +RP MW+ QL AG LLFA I VLN+F Sbjct: 415 ANRLLAVGIEKRIETEISWFFIAWGAAAVLAHIRPNRRMWQWQLTAGGLLFALIPVLNVF 474 Query: 481 TTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAA 531 TT+SHLGVTLL G+GPW VAGFDL L G SL A + LA+++ +A A Sbjct: 475 TTNSHLGVTLLQGKGPWAVAGFDLFALGFGLSLIYAAKRLAQKKPVAKAKA 525 >ref|YP_728289.1| uncharacterized iron-regulated membrane protein [Ralstonia eutropha H16] emb|CAJ94924.1| uncharacterized iron-regulated membrane protein [Ralstonia eutropha H16] Length = 547 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 331/530 (62%), Positives = 381/530 (71%), Gaps = 13/530 (2%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQ-RQPVPQP 59 M+ G RQSMAWLHTWSGLLVCW+LLL+F GGSASYFK+EIS WM PELH T VP Sbjct: 1 MRAGFRQSMAWLHTWSGLLVCWVLLLMFCGGSASYFKEEISLWMRPELHRTAPAAEVPAT 60 Query: 60 LAVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPP---PKDGPAGSARSRFTSEL 116 + A+ +L +QAP A RWFI+LP R A V W+ P P+D A RF S L Sbjct: 61 QVAQNAVRYLSRQAPDAARWFITLPDDRRQAATVRWVYKPGQAPRD--ADGKPRRFDSRL 118 Query: 117 VDVTTGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKR 176 +D TG + A RETRGGEFLYRLHFDLHYMP +WARWI A+FMLVAIVSGVITH+R Sbjct: 119 LDPATGAPLQAARETRGGEFLYRLHFDLHYMPARWARWIAGFCAMFMLVAIVSGVITHRR 178 Query: 177 IFKDFFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKG 236 IF DFFTFR KGQRSWLDAHNA AVLALPFHLMITYTGLVTL+FM MPWG++ AY +G Sbjct: 179 IFADFFTFRRGKGQRSWLDAHNALAVLALPFHLMITYTGLVTLLFMYMPWGIEAAY--RG 236 Query: 237 GESAFFEEVF--PNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKA 294 GE AF E P A AAG LT++ +V QA++ WQGA +T+N PGDA A Sbjct: 237 GERAFQAEAMLRPRPA---SAAGTPAALTSVADMVAQAERRWQGAAPRRITVNLPGDANA 293 Query: 295 TVVLTRQKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLR 354 TV LTR + TL++ L F G SG + E S +TR+V+ GLH+ FA P LR Sbjct: 294 TVALTRAEPTTLAHDASTLEFSGTSGAMLRAYAEDKSAAELTRSVMTGLHIAGFASPGLR 353 Query: 355 WLFFLCGLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIA 414 LFFLCGL+G MVA+GA+LWAV+TRQ+QAKA+A GARPG GLRLV+ALNIGAIAGLPIA Sbjct: 354 ALFFLCGLAGSAMVATGAILWAVRTRQQQAKALAAGARPGVGLRLVEALNIGAIAGLPIA 413 Query: 415 FASYFWANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGI 474 FASYFWANRLLP+E+AQRP+AEI FFIAWA A+LA LRP MWRAQL GA LF G+ Sbjct: 414 FASYFWANRLLPVELAQRPEAEIRWFFIAWAACALLALLRPARGMWRAQLWVGAALFGGV 473 Query: 475 VVLNIFTTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQ 524 VLN TT SHLGVTLL GRGP VAGFDL L LG +L A ++ R Q Sbjct: 474 PVLNALTTGSHLGVTLLQGRGPAAVAGFDLVTLTLGIALAAAAWMVGRGQ 523 >ref|YP_583261.1| hypothetical protein Rmet_1106 [Cupriavidus metallidurans CH34] gb|ABF07992.1| putative membrane protein [Cupriavidus metallidurans CH34] Length = 542 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 316/532 (59%), Positives = 373/532 (70%), Gaps = 7/532 (1%) Query: 3 EGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPLAV 62 +GLRQSMAWLHTWSGLLVCW+L LVF GG+ASY KDEIS WM PELHA+ V Sbjct: 8 QGLRQSMAWLHTWSGLLVCWVLFLVFCGGTASYVKDEISLWMKPELHASWEGDVSAADVA 67 Query: 63 ERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPP-PKDGPAGSARSRFTSELVDVTT 121 +RA A+LQ++AP AERWFI+LP +R A+ V W+ P P D G+ R+R S +D T Sbjct: 68 QRAYAYLQREAPGAERWFINLPDARRPAISVFWLRKPGPADAGKGN-RARLESRTLDART 126 Query: 122 GQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKDF 181 G + R+TRGGEFLYRLHFDLHY+P ARWIV I A+FMLVAI+SGVITH+RIF DF Sbjct: 127 GMPIPGARDTRGGEFLYRLHFDLHYIPAVQARWIVGICAMFMLVAIISGVITHRRIFTDF 186 Query: 182 FTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESAF 241 FTFR KG RSWLDAHNA AVLALPFHLMITYTGLVTL+FM MPWG+Q Y KG E AF Sbjct: 187 FTFRPRKGPRSWLDAHNAMAVLALPFHLMITYTGLVTLLFMYMPWGIQAVY--KGDEKAF 244 Query: 242 FEEVFPNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVVLTRQ 301 E+ A R KAA +A L I P+V QA W G P + + P +A ATV LTR Sbjct: 245 TAELAAR-APRVKAANEAAVLAPIAPMVEQAMARWHGTPPQRIAVEQPSNANATVSLTRA 303 Query: 302 KAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPWLRWLFFLCG 361 ++ + P +VF G +GV +A++GE + TR+ + GLH+ HFA P LR LFF+ G Sbjct: 304 ESRDIGTTLPVMVFSGATGVVQAALGESVAAASATRSTMVGLHVAHFAPPLLRALFFVSG 363 Query: 362 LSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAFASYFWA 421 L+G LMVA+GALLWAVKTRQ AK IA R GLRLV+ALN+G IAGLPIAFA+YFWA Sbjct: 364 LAGALMVATGALLWAVKTRQSHAKRIAAIGRVPSGLRLVEALNLGVIAGLPIAFAAYFWA 423 Query: 422 NRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIVVLNIFT 481 NRLLP +MAQR EI FF AWAVAA+LAQ +P MWR L GA LFAG+ VLN T Sbjct: 424 NRLLPADMAQRSGMEIRAFFSAWAVAALLAQWKPTREMWRVLLWTGAGLFAGLPVLNAIT 483 Query: 482 THSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLAERILARRQRRQRAAAAV 533 T SHLGVTL GP VAGFDLT+LA+G + A +L +R +RAA AV Sbjct: 484 TTSHLGVTLR--HGPIAVAGFDLTVLAIGIGIGAAAWMLGKRGPEKRAAPAV 533 >ref|YP_001796567.1| hypothetical protein RALTA_B0126 [Cupriavidus taiwanensis LMG 19424] emb|CAP63328.1| conserved hypothetical protein, PepSY-associated TM helix [Cupriavidus taiwanensis LMG 19424] Length = 551 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 310/515 (60%), Positives = 369/515 (71%), Gaps = 16/515 (3%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQ-----RQP 55 M+ G RQSMAWLHTWSGLLVCW+L L+F GG+ASY+K+EIS WM PELH T + P Sbjct: 1 MRAGFRQSMAWLHTWSGLLVCWVLFLMFCGGTASYYKEEISLWMRPELHRTAPANAAQSP 60 Query: 56 ---VPQPLAVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPP---PKDGPAGSAR 109 VP + A+ +L+++AP A RWFI+LP R A+ V W P P+D A Sbjct: 61 AAQVPPGQMAQNALRYLEREAPDALRWFITLPDGRRDAVNVLWTYKPGQAPRD--ADGKP 118 Query: 110 SRFTSELVDVTTGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVS 169 RF + L+D TG + A RETRGGEFLYRLHFDLHYMP +WARWI A+FMLVAIVS Sbjct: 119 RRFDTRLLDPATGAPLQAARETRGGEFLYRLHFDLHYMPAKWARWIAGFCAMFMLVAIVS 178 Query: 170 GVITHKRIFKDFFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQ 229 GVITH+RIF DFFTFR KGQRSWLDAHNA AVL LPFHLMITYTGLVTL+FM MPWGV+ Sbjct: 179 GVITHRRIFADFFTFRRGKGQRSWLDAHNALAVLPLPFHLMITYTGLVTLLFMYMPWGVE 238 Query: 230 TAYPGKGGESAFFEEVFPNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHP 289 AY GG+ F+ KAAG+A PL ++ ++ QA++ WQG + + +N P Sbjct: 239 AAY---GGDQRAFQAQTRLRPLPPKAAGEAAPLASVPAMMAQAERAWQGGQVRRIVVNLP 295 Query: 290 GDAKATVVLTRQKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFA 349 GDA ATV L+R + ATL++ AL F G SG + E S +TR+V+ GLH+ FA Sbjct: 296 GDANATVTLSRAEPATLAHDPSALEFAGTSGAVLGTYAEDKSAAELTRSVMTGLHIASFA 355 Query: 350 DPWLRWLFFLCGLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIA 409 P LR LFFLCGL+G MVA+GA+LWAV+TRQ+QAKAIA RPG+GLRLV+ALNIGAIA Sbjct: 356 PPGLRALFFLCGLAGTAMVATGAILWAVRTRQQQAKAIAARGRPGFGLRLVEALNIGAIA 415 Query: 410 GLPIAFASYFWANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGAL 469 GLP+AFASYFWANRLLP+ MAQRP+AE+ FF+AWA A+LA RP MWRAQL AGA Sbjct: 416 GLPVAFASYFWANRLLPVAMAQRPEAEVRWFFMAWAACALLALCRPTRGMWRAQLWAGAA 475 Query: 470 LFAGIVVLNIFTTHSHLGVTLLLGRGPWPVAGFDL 504 LF I +LN TT SHLGVTLL GRGP VAGFDL Sbjct: 476 LFGTIPLLNALTTGSHLGVTLLQGRGPAAVAGFDL 510 >ref|YP_001971404.1| putative transmembrane PepSY domain-containing protein [Stenotrophomonas maltophilia K279a] emb|CAQ45099.1| putative transmembrane PepSY domain protein [Stenotrophomonas maltophilia K279a] Length = 545 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 287/521 (55%), Positives = 353/521 (67%), Gaps = 23/521 (4%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 MK G RQSMAWLHTW+GLLV WLLLL+F G+ASY+++EIS WM PEL ++ V + Sbjct: 1 MKNGFRQSMAWLHTWTGLLVGWLLLLIFMAGTASYYREEISRWMRPELPSSN---VSIDV 57 Query: 61 AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120 A +RA+ +LQ A QAE WF++LP R+ AM++ W PP P+ R F +D Sbjct: 58 AAQRAVDYLQANAAQAENWFVTLPQPRNPAMQMFWRLPPELADPSRGRRGGFGDATLDPN 117 Query: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180 TGQ + A RETRGG+F YRLHFDLHY+PV WAR++V A+FMLVAI++GVITHK+IFKD Sbjct: 118 TGQALKA-RETRGGDFFYRLHFDLHYIPVLWARYLVGFCAMFMLVAIITGVITHKKIFKD 176 Query: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240 FFTFR +KG RSWLD HN +AV+ALP+H MITYTG+VTLM M +PWGV+ AYP E Sbjct: 177 FFTFRKDKGLRSWLDFHNVSAVMALPYHAMITYTGIVTLMIMYLPWGVKVAYPQD--EDT 234 Query: 241 FFEEVF---PNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVV 297 FF E F P V A G ATPL I L+ A+ HW G +A T+++PG A A + Sbjct: 235 FFFEAFGGLPEVT--APAEGHATPLP-IAQLLDSARAHWHGVEVAGFTVSNPGAANAVID 291 Query: 298 LTRQKAATLSYLQPALVFDGVSGVQKASVGEQPSNTG--VTRAVLYGLHLGHFADPWLRW 355 + ++ LS PA+ +D VSG A + E P + G TR VLYGLHL FAD LR Sbjct: 292 IRQRDGKRLSIDTPAVRYDMVSG---ALLEETPPSGGATATRGVLYGLHLARFADWGLRA 348 Query: 356 LFFLCGLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAF 415 LFFL GL G LMVASG +LWAVK R + AK+ R G+GLRLVDALNIG +AGLPIAF Sbjct: 349 LFFLSGLVGCLMVASGVVLWAVKERPRHAKS----GRTGFGLRLVDALNIGTVAGLPIAF 404 Query: 416 ASYFWANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIV 475 A+YFW NRLLPL++A+R AE NVFF AWA A + A + P MW QL GA FA + Sbjct: 405 AAYFWGNRLLPLDIAERSSAEANVFFYAWAGALLAAFIWPKRMMWVWQLYLGAAAFALVP 464 Query: 476 VLNIFTTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLA 516 V+N TTH+HLG TL G W +AGFDL+M+A GA L L Sbjct: 465 VVNALTTHAHLGNTLR--NGDWVLAGFDLSMIAFGAMLALC 503 >ref|YP_004791873.1| PepSY-associated TM helix domain-containing protein [Burkholderia sp. JV3] gb|AEM50647.1| PepSY-associated TM helix domain protein [Burkholderia sp. JV3] Length = 545 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 285/521 (54%), Positives = 353/521 (67%), Gaps = 23/521 (4%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 MK G RQSMAWLHTW+GLLV WLLLL+F G+ASY+++EIS WM PEL +++ V + Sbjct: 1 MKNGFRQSMAWLHTWTGLLVGWLLLLIFMAGTASYYREEISRWMRPELPSSK---VSIDV 57 Query: 61 AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120 A +RA+ +LQ A QAE WF++LP R+ AM++ W PP P+ R F +D Sbjct: 58 AAQRAVDYLQANATQAENWFVTLPQPRNPAMQMFWRLPPELADPSRGRRGGFGDATLDPN 117 Query: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180 TGQ + A RETRGG+F YRLHFDLHY+PV WAR++V A+FMLVAI++GVITHK+IFKD Sbjct: 118 TGQALKA-RETRGGDFFYRLHFDLHYIPVLWARYLVGFCAMFMLVAIITGVITHKKIFKD 176 Query: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240 FFTFR +KG RSWLD HN +AV+ALP+H MITYTG+VTLM M +PWGV+ AYP E Sbjct: 177 FFTFRKDKGLRSWLDFHNVSAVMALPYHAMITYTGIVTLMIMYLPWGVKVAYPQD--EDK 234 Query: 241 FFEEVF---PNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVV 297 FF E F P V A G+ATPL I L+ A+ HW G +A T+++PG A A + Sbjct: 235 FFSEAFGGMPEVT--APAEGRATPL-PIAQLLDSARAHWHGVEVAGFTVSNPGAANAVID 291 Query: 298 LTRQKAATLSYLQPALVFDGVSGVQKASVGEQPSNTG--VTRAVLYGLHLGHFADPWLRW 355 + ++ LS PAL +D ++G + E P + G TR VLYGLHL FAD LR Sbjct: 292 IRQRDGKRLSTDTPALRYDMINGTL---LEETPPSGGATATRGVLYGLHLARFADWGLRA 348 Query: 356 LFFLCGLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAF 415 LFFL GL G LMVASG +LWAVK R K AK+ R G+GLRLVDALNIG +AGLPIAF Sbjct: 349 LFFLSGLVGCLMVASGVVLWAVKERPKHAKS----GRTGFGLRLVDALNIGTVAGLPIAF 404 Query: 416 ASYFWANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIV 475 A+YFW NRLLPL++A+R AE NVFF AW A + A + P MW QL GA FA + Sbjct: 405 AAYFWGNRLLPLDIAERSSAEANVFFYAWGGALLAAFIWPKRMMWAWQLYLGAAAFALVP 464 Query: 476 VLNIFTTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLA 516 V+N TTH+HLGVTL G W +AG DL+M+A GA L L Sbjct: 465 VVNALTTHAHLGVTLR--DGDWVLAGVDLSMIAFGAMLALC 503 >ref|ZP_05134598.1| PepSY-associated TM helix [Stenotrophomonas sp. SKA14] gb|EED38659.1| PepSY-associated TM helix [Stenotrophomonas sp. SKA14] Length = 545 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 286/521 (54%), Positives = 352/521 (67%), Gaps = 23/521 (4%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 MK G RQSMAWLHTW+GLLV WLLLL+F G+ASY+++EIS WM PEL A + V + Sbjct: 1 MKNGFRQSMAWLHTWTGLLVGWLLLLIFMAGTASYYREEISRWMRPELPANK---VSIDV 57 Query: 61 AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120 A +RA+ +LQ A QAE WF++LP R+ AM++ W PP P+ R F +D Sbjct: 58 AAQRAVDYLQANASQAENWFVTLPQPRNPAMQMFWRLPPELADPSRGRRGGFGDATLDPN 117 Query: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180 TGQ + A RETRGG+F YRLHFDLHY+PV WAR++V A+FMLVAI++GVITHK+IFKD Sbjct: 118 TGQALKA-RETRGGDFFYRLHFDLHYIPVLWARYLVGFCAMFMLVAIITGVITHKKIFKD 176 Query: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240 FFTFR +KG RSWLD HN +AV+ALP+H MITYTG+VTLM M +PWGV+ AYP E Sbjct: 177 FFTFRKDKGLRSWLDFHNVSAVMALPYHAMITYTGIVTLMIMYLPWGVKVAYPQD--EDK 234 Query: 241 FFEEVF---PNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVV 297 FF E F P V A G+ATPL I L+ A+ HW G +A T+++PG A A + Sbjct: 235 FFSEAFGGMPEVT--APAEGRATPL-PIAQLLDSARAHWHGVEVAGFTVSNPGAANAMID 291 Query: 298 LTRQKAATLSYLQPALVFDGVSGVQKASVGEQPSNTG--VTRAVLYGLHLGHFADPWLRW 355 + ++ LS PA+ +D V+G + E P + G TR VLYGLHL FAD LR Sbjct: 292 IRQRDGKRLSTDTPAVRYDMVNGTL---LEETPPSGGATATRGVLYGLHLARFADWGLRA 348 Query: 356 LFFLCGLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAF 415 LFFL GL G LMVASG +LWAVK R K AK+ R G+GLRLVDALNIG +AGLPIAF Sbjct: 349 LFFLSGLVGCLMVASGVVLWAVKERPKHAKS----GRVGFGLRLVDALNIGTVAGLPIAF 404 Query: 416 ASYFWANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIV 475 A+YFW NRLLPL++A+R AE NVFF AW A + A + P MW QL GA FA + Sbjct: 405 AAYFWGNRLLPLDIAERSSAEANVFFYAWGTALLAAFVWPKRMMWAWQLYLGAAAFALVP 464 Query: 476 VLNIFTTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLA 516 V+N TTH+HLGVTL G W +AG DL+M+A GA L L Sbjct: 465 VVNALTTHAHLGVTLR--NGDWVLAGVDLSMIAFGAMLALC 503 >ref|YP_002027712.1| hypothetical protein Smal_1324 [Stenotrophomonas maltophilia R551-3] gb|ACF51029.1| conserved hypothetical protein [Stenotrophomonas maltophilia R551-3] Length = 545 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 285/521 (54%), Positives = 352/521 (67%), Gaps = 23/521 (4%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 MK G RQSMAWLHTW+GLLV WLLLL+F G+ASY+++EIS WM PEL ++ V + Sbjct: 1 MKNGFRQSMAWLHTWTGLLVGWLLLLIFMAGTASYYREEISRWMRPELPSSN---VSIDV 57 Query: 61 AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAPPPKDGPAGSARSRFTSELVDVT 120 A +RA+ +LQ A QAE WF++LP R+ AM++ W PP P+ R F +D Sbjct: 58 AAQRAVDYLQANAAQAENWFVTLPQPRNPAMQMFWRLPPELADPSRGRRGGFGDATLDPN 117 Query: 121 TGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFKD 180 TGQ + A RETRGG+F YRLHFDLHY+PV WAR++V A+FMLVAI++GVITHK+IFKD Sbjct: 118 TGQALKA-RETRGGDFFYRLHFDLHYIPVLWARYLVGFCAMFMLVAIITGVITHKKIFKD 176 Query: 181 FFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGESA 240 FFTFR +KG RSWLD HN +AV+ALP+H MITYTG+VTLM M +PWGV+ AYP E Sbjct: 177 FFTFRKDKGLRSWLDFHNVSAVMALPYHAMITYTGIVTLMIMYLPWGVKVAYPQD--EDK 234 Query: 241 FFEEVF---PNVAGRGKAAGQATPLTAIGPLVTQAQQHWQGAPLALVTINHPGDAKATVV 297 FF E F P V A G+ATPL I L+ A+ HW G +A T+++PG A A + Sbjct: 235 FFSEAFGGMPEVT--APAEGRATPL-PIAQLLDSARAHWHGVEVAGFTVSNPGAANAVID 291 Query: 298 LTRQKAATLSYLQPALVFDGVSGVQKASVGEQPSNTG--VTRAVLYGLHLGHFADPWLRW 355 + ++ LS PA+ +D V+G + E P + G TR VLYGLHL FAD LR Sbjct: 292 IRQRDGKRLSTDTPAVRYDMVNGTL---LEETPPSGGATATRGVLYGLHLARFADWGLRA 348 Query: 356 LFFLCGLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLPIAF 415 LFFL GL G LMVASG +LWAVK R K AK+ R G+GLRLVDALNIG +AGLPIAF Sbjct: 349 LFFLSGLVGCLMVASGVVLWAVKERPKHAKS----GRIGFGLRLVDALNIGTVAGLPIAF 404 Query: 416 ASYFWANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFAGIV 475 A+YFW NRLLPL++A+R AE NVFF AW A + A + P MW QL GA FA + Sbjct: 405 AAYFWGNRLLPLDIAERSSAEANVFFYAWGAALLAAFIWPKRMMWAWQLYLGAAAFALVP 464 Query: 476 VLNIFTTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLA 516 V+N TTH+HLG TL G W +AGFDL+M+A GA L L Sbjct: 465 VVNALTTHAHLGNTLR--NGDWVLAGFDLSMIAFGAMLALC 503 >ref|YP_004038861.1| pepsy-associated tm helix domain-containing protein [Methylovorus sp. MP688] gb|ADQ83625.1| PepSY-associated TM helix domain protein [Methylovorus sp. MP688] Length = 548 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 263/525 (50%), Positives = 340/525 (64%), Gaps = 18/525 (3%) Query: 1 MKEGLRQSMAWLHTWSGLLVCWLLLLVFAGGSASYFKDEISFWMMPELHATQRQPVPQPL 60 MK+ R SMAW+HTW+GLLVCW+LLL+FA G+ASY+++EI+ WM PELHA Q Sbjct: 1 MKDAFRASMAWVHTWAGLLVCWVLLLIFAAGTASYYRNEITLWMQPELHAIAPSQDSQAH 60 Query: 61 AVERAIAHLQQQAPQAERWFISLPSSRSVAMRVGWIAP-PPKDGPAGSARSRFTSELVDV 119 ERA+ LQQ+AP A++WFI P+ RS +++ W PP P R RF +++ Sbjct: 61 MAERAVIALQQRAPDAKQWFIGFPNERSQGLQIFWEDKLPPGVEPT---RERFHDVMLNP 117 Query: 120 TTGQKMAAVRETRGGEFLYRLHFDLHYMPVQWARWIVSIGALFMLVAIVSGVITHKRIFK 179 TG + VRET+GG F YRLHFDLHY+PV ARWIV A+FMLVA+++GVI H+RIFK Sbjct: 118 DTGLPLE-VRETKGGNFFYRLHFDLHYLPVTLARWIVGFCAMFMLVALITGVIIHRRIFK 176 Query: 180 DFFTFRANKGQRSWLDAHNAAAVLALPFHLMITYTGLVTLMFMIMPWGVQTAYPGKGGES 239 DFFTFR KGQRSWLDAHN VLALP+HLMITYTGL+ LM++ MP + AY +G Sbjct: 177 DFFTFRPGKGQRSWLDAHNITGVLALPYHLMITYTGLMLLMYLYMPTPIVVAY--QGNNQ 234 Query: 240 AFFEEVFPNVAGRGKAAGQATPLTAIGPLVTQAQQHWQG-------APLALVTINHPGDA 292 AFF E+F + +G+A LT+IG LV QAQ W+G A + + IN+P DA Sbjct: 235 AFFGELFREEPA-PEPSGRAAKLTSIGNLVAQAQHIWRGSEGNGSHAKVDHMHINNPNDA 293 Query: 293 KATVVLTRQKAATLSYLQPALVFDGVSGVQKASVGEQPSNTGVTRAVLYGLHLGHFADPW 352 A+V + + L +L FDGV+G V + T + LH +FA P Sbjct: 294 AASVSMDKAGDGGLIESGMSLTFDGVNGKLLHEVDAEQRAVVQTATAMRSLHEANFAQPL 353 Query: 353 LRWLFFLCGLSGYLMVASGALLWAVKTRQKQAKAIAQGARPGWGLRLVDALNIGAIAGLP 412 LR LFF+ GL G LM+ASGA+LW VK RQ QAK++A G P WGLRLV+ LN+G IAGLP Sbjct: 354 LRALFFISGLGGCLMIASGAVLWTVKKRQAQAKSLASGLPPTWGLRLVEGLNLGVIAGLP 413 Query: 413 IAFASYFWANRLLPLEMAQRPQAEINVFFIAWAVAAVLAQLRPGLAMWRAQLGAGALLFA 472 IAFA++FWANR+LP+ +A R + EI+ FIAWA +LAQ RP MW+ L G L++ Sbjct: 414 IAFATFFWANRILPVGLADRDEWEIHCVFIAWAAVLLLAQWRPRRHMWQLMLWLGGLMWL 473 Query: 473 GIVVLN-IFTTHSHLGVTLLLGRGPWPVAGFDLTMLALGASLWLA 516 + VLN + T S L T L +GP VAG D+T + LGA++ A Sbjct: 474 ALPVLNAMLTPQSALLTT--LQQGPAAVAGLDITAMLLGAAICFA 516