BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0003.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776638.1| hypothetical protein Hsero_3249 [Herbaspiril... 483 e-135 ref|YP_004488303.1| hypothetical protein DelCs14_2938 [Delftia s... 252 3e-65 ref|YP_001564900.1| hypothetical protein Daci_3884 [Delftia acid... 249 2e-64 ref|YP_487132.1| hypothetical protein RPB_3526 [Rhodopseudomonas... 242 3e-62 ref|YP_002287729.1| hypothetical protein OCAR_4722 [Oligotropha ... 238 4e-61 ref|YP_001991048.1| hypothetical protein Rpal_2050 [Rhodopseudom... 230 1e-58 ref|NP_947191.1| hypothetical protein RPA1846 [Rhodopseudomonas ... 229 2e-58 ref|YP_004109979.1| hypothetical protein Rpdx1_3679 [Rhodopseudo... 227 1e-57 ref|YP_003277644.1| hypothetical protein CtCNB1_1602 [Comamonas ... 200 2e-49 ref|ZP_07042745.1| hypothetical protein CTS44_00998 [Comamonas t... 200 2e-49 >ref|YP_003776638.1| hypothetical protein Hsero_3249 [Herbaspirillum seropedicae SmR1] gb|ADJ64730.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS 60 MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS Sbjct: 1 MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS 60 Query: 61 AVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAA 120 AVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAA Sbjct: 61 AVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAA 120 Query: 121 RLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLV 180 RLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLV Sbjct: 121 RLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLV 180 Query: 181 QFDLPWQGVYVAEVHHTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK 239 QFDLPWQGVYVAEVHHTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK Sbjct: 181 QFDLPWQGVYVAEVHHTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK 239 >ref|YP_004488303.1| hypothetical protein DelCs14_2938 [Delftia sp. Cs1-4] gb|AEF89948.1| hypothetical protein DelCs14_2938 [Delftia sp. Cs1-4] Length = 242 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 131/236 (55%), Positives = 166/236 (70%), Gaps = 6/236 (2%) Query: 10 LFTSLLLALPAS-AHQIWLQQD-GKEAKLYFGEFGDNLREVSPGLLDKFVSPSAVLISAQ 67 L ++LL A AS AHQIWL+Q G+ A + FGEFGDNLRE SPGLLDKF P A L+SAQ Sbjct: 7 LVSALLAASGASQAHQIWLEQPAGETAVIRFGEFGDNLRETSPGLLDKFGKPVATLVSAQ 66 Query: 68 GDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAARLVTSAA 127 G++ K F+L KAGQG+S+VAEDA YP++ +K R + PAARL+T A Sbjct: 67 GEKAADGRKTGTGFALPFKAGQGDSIVAEDAGYPLYTSKKGEQELRNWYHPAARLITGFA 126 Query: 128 AQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLVQFDLPWQ 187 AQ PRLTLD++P+GK G+FKV YK LPKAKV L SGW KEAH+DEQGLVQFD+PW+ Sbjct: 127 AQAPRLTLDVVPSGKAGEFKVIYKGQPLPKAKVVLTVQSGWSKEAHADEQGLVQFDMPWK 186 Query: 188 GVYVAEVHHTDKTAGERDG----KPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK 239 G YVAE H +++ GER G + YD +VT+++ V+ +G+ + A PAAKPNK Sbjct: 187 GTYVAEATHDERSGGERTGPNGAEKYDGVHYVTSVTYVKPEGVAPIAAGPAAKPNK 242 >ref|YP_001564900.1| hypothetical protein Daci_3884 [Delftia acidovorans SPH-1] gb|ABX36515.1| conserved hypothetical protein [Delftia acidovorans SPH-1] Length = 242 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 130/236 (55%), Positives = 165/236 (69%), Gaps = 6/236 (2%) Query: 10 LFTSLLLALPAS-AHQIWLQQD-GKEAKLYFGEFGDNLREVSPGLLDKFVSPSAVLISAQ 67 L ++LL A AS AHQIWL+Q G+ A + FGEFGDNLRE SPGLLDKF P A L+SAQ Sbjct: 7 LVSALLAASGASQAHQIWLEQPAGETAVIRFGEFGDNLRETSPGLLDKFGKPVATLVSAQ 66 Query: 68 GDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAARLVTSAA 127 G++ K F+L KAGQG+S+VAEDA YP++ +K R + PAARL+T A Sbjct: 67 GEKAADGRKTGTGFALPFKAGQGDSIVAEDAGYPLYTSKKGEQELRNWYHPAARLITGFA 126 Query: 128 AQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLVQFDLPWQ 187 AQ RLTLD++P+GK G+FKV YK LPKAKV L SGW KEAH+DEQGLVQFD+PW+ Sbjct: 127 AQASRLTLDVVPSGKAGEFKVIYKGQPLPKAKVVLTVQSGWSKEAHADEQGLVQFDMPWK 186 Query: 188 GVYVAEVHHTDKTAGERDG----KPYDTASFVTTLSLVQAKGMKALPAAPAAKPNK 239 G YVAE H +++ GER G + YD +VT+++ V+ +G+ + A PAAKPNK Sbjct: 187 GTYVAEATHDERSGGERTGPNGAEKYDGVHYVTSVTYVKPEGVAPIAAGPAAKPNK 242 >ref|YP_487132.1| hypothetical protein RPB_3526 [Rhodopseudomonas palustris HaA2] gb|ABD08221.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 240 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 124/240 (51%), Positives = 167/240 (69%), Gaps = 5/240 (2%) Query: 1 MKRLAIVSGLFTSLLLAL-PASAHQIWLQQ-DGKEAKLYFGEFGDNLREVSPGLLDKFVS 58 M +L+I +LL A+ A AHQIW++Q DG+ A + FGEFGDNLREVSPGLLDKF Sbjct: 1 MNKLSIA---LVALLGAMNSAQAHQIWIEQADGQNAVVRFGEFGDNLREVSPGLLDKFSK 57 Query: 59 PSAVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTP 118 P+A LISA+G++T+ +K + F+L A G+S+VA+DA+YP++ K R + P Sbjct: 58 PTATLISAKGEQTVDATKTATGFTLPFAAKAGDSIVAQDANYPLYTWKQPDKEVRNWFHP 117 Query: 119 AARLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQG 178 AARL+T AA P+L LDL+PTGK G+FK+ +K+ PK KV L T SGW KEAH+D QG Sbjct: 118 AARLITGFAALPPKLPLDLVPTGKTGEFKLVFKDQPKPKTKVTLTTQSGWAKEAHTDAQG 177 Query: 179 LVQFDLPWQGVYVAEVHHTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAAKPN 238 V F++PW+GVYV EV +TD+T GER G+ +D + TTL+ +QA G+ +PA PAA P Sbjct: 178 QVSFEMPWKGVYVVEVSYTDRTPGERAGEKFDAVVYGTTLTFMQADGLPPIPAGPAATPT 237 >ref|YP_002287729.1| hypothetical protein OCAR_4722 [Oligotropha carboxidovorans OM5] ref|YP_004634145.1| hypothetical protein OCA5_c32280 [Oligotropha carboxidovorans OM5] gb|ACI91864.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5] gb|AEI04274.1| hypothetical protein OCA4_c31760 [Oligotropha carboxidovorans OM4] gb|AEI07904.1| hypothetical protein OCA5_c32280 [Oligotropha carboxidovorans OM5] Length = 242 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 125/245 (51%), Positives = 166/245 (67%), Gaps = 9/245 (3%) Query: 1 MKRLAIVS-GLFTSLLLALPASAHQIWLQQ-DGKEAKLYFGEFGDNLREVSPGLLDKFVS 58 M +L+I + LF + +PA AHQIW++Q +G+ A + FGEFG+NLRE SPGLLDKFV Sbjct: 1 MMKLSIAAIALFG---VVMPAQAHQIWIEQPEGQNAVVRFGEFGENLREASPGLLDKFVK 57 Query: 59 PSAVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTP 118 + ISA+G++ +K ++ F+L KA GESLVAEDA YP++ K + P Sbjct: 58 VTGAHISAKGEQKSDATKTANGFTLPFKAASGESLVAEDASYPLYTWKQKDKDVINWFYP 117 Query: 119 AARLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQG 178 AARLVT AQ+P+L LDL+PTG+ GQFK+ +KN K KV LVT SGW KEAH+DEQG Sbjct: 118 AARLVTGFTAQQPKLVLDLVPTGEAGQFKLLFKNQPKAKTKVTLVTQSGWSKEAHTDEQG 177 Query: 179 LVQFDLPWQGVYVAEVHHTDKTAGERDG----KPYDTASFVTTLSLVQAKGMKALPAAPA 234 LV+FD+PW+G YVAEV D++AGER G + YD S+VTT++ V G+ +P+ P Sbjct: 178 LVKFDMPWKGAYVAEVSVNDRSAGERPGASGAEKYDAVSYVTTVTYVNGSGLDPIPSGPP 237 Query: 235 AKPNK 239 A P K Sbjct: 238 ATPGK 242 >ref|YP_001991048.1| hypothetical protein Rpal_2050 [Rhodopseudomonas palustris TIE-1] gb|ACF00573.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 244 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 114/210 (54%), Positives = 147/210 (70%), Gaps = 4/210 (1%) Query: 18 LPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPSAVLISAQGDRTLALSKQ 77 +PA AHQIW++Q +A + FGEFG+NLRE SPGLLDKF + L+SA+G++ SK Sbjct: 16 VPAQAHQIWIEQADGQAVVRFGEFGENLREASPGLLDKFAKVTGTLLSAKGEQKAEASKT 75 Query: 78 SDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAARLVTSAAAQEPRLTLDL 137 + F L A G+SLVAEDA+YP++ K R + PAARL+T AAQ+P+L LDL Sbjct: 76 ASGFKLPFTAVAGDSLVAEDANYPLYTWKQQDKDVRNWFYPAARLITGFAAQQPKLVLDL 135 Query: 138 LPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLVQFDLPWQGVYVAEVHHT 197 +PTG+PGQFK+ +K+ PK KV L T SGW KEAH+D QGLV FD+PW+GVYVAEV Sbjct: 136 VPTGQPGQFKLVFKDQPKPKTKVTLTTQSGWAKEAHTDAQGLVSFDMPWKGVYVAEVSLN 195 Query: 198 DKTAGERDG----KPYDTASFVTTLSLVQA 223 DKTAGER G +PYD S+ TT++ +A Sbjct: 196 DKTAGERSGPKGAEPYDAVSYATTVTYEKA 225 >ref|NP_947191.1| hypothetical protein RPA1846 [Rhodopseudomonas palustris CGA009] emb|CAE27287.1| unknown protein [Rhodopseudomonas palustris CGA009] Length = 244 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/213 (53%), Positives = 147/213 (69%), Gaps = 4/213 (1%) Query: 18 LPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPSAVLISAQGDRTLALSKQ 77 +PA AHQIW++Q +A + FGEFG+NLRE SPGLLDKF + L+SA+G++ SK Sbjct: 16 VPAQAHQIWIEQADGQAVVRFGEFGENLREASPGLLDKFGKVTGTLLSAKGEQKAEASKT 75 Query: 78 SDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAARLVTSAAAQEPRLTLDL 137 + F L A G+S+VAEDA YP++ K R + PAARL+T AAQ+P+L LDL Sbjct: 76 ASGFKLPFTAAAGDSIVAEDASYPLYTWKQQDKDVRNWFYPAARLITGFAAQQPKLVLDL 135 Query: 138 LPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLVQFDLPWQGVYVAEVHHT 197 +P G+PGQFK+ +K+ PK KV L T SGW KEAH+D QGLV FD+PW+GVYVAEV Sbjct: 136 VPAGQPGQFKLVFKDQPKPKTKVTLTTQSGWAKEAHTDAQGLVSFDMPWKGVYVAEVSLN 195 Query: 198 DKTAGERDG----KPYDTASFVTTLSLVQAKGM 226 DKTAGER G +PYD S+ TT++ +A G+ Sbjct: 196 DKTAGERSGPKGAEPYDAVSYATTVTYEKADGL 228 >ref|YP_004109979.1| hypothetical protein Rpdx1_3679 [Rhodopseudomonas palustris DX-1] gb|ADU45246.1| hypothetical protein Rpdx1_3679 [Rhodopseudomonas palustris DX-1] Length = 244 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/227 (51%), Positives = 152/227 (66%), Gaps = 6/227 (2%) Query: 1 MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS 60 MK+L++ + +L A AHQIW++Q A + FGEFG+NLRE SPGLLDKF + Sbjct: 1 MKKLSLA--MLATLGAMTSAQAHQIWIEQADGGAVVRFGEFGENLREASPGLLDKFSKVT 58 Query: 61 AVLISAQGDRTLALSKQSDAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAA 120 A L+SA G++ SK + F L A G+S+VAEDA YP++ K R + PAA Sbjct: 59 ATLLSAMGEQKAEASKIASGFKLPFAAAAGDSIVAEDAGYPLYTWKQQDKEVRNWFYPAA 118 Query: 121 RLVTSAAAQEPRLTLDLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLV 180 RL+T AAQ+P+L LDL+PTG+PGQFK+ +K+ PK KV L T SGW KEAH+D QGLV Sbjct: 119 RLITGFAAQQPKLPLDLVPTGQPGQFKLVFKDQPKPKIKVTLTTQSGWAKEAHTDAQGLV 178 Query: 181 QFDLPWQGVYVAEVHHTDKTAGERDG----KPYDTASFVTTLSLVQA 223 FD+PWQGVYVAEV DKTAGER G +PYD S+ TT++ +A Sbjct: 179 TFDMPWQGVYVAEVSMNDKTAGERAGPNGAEPYDAVSYATTVTYEKA 225 >ref|YP_003277644.1| hypothetical protein CtCNB1_1602 [Comamonas testosteroni CNB-2] gb|ACY32348.1| conserved hypothetical protein [Comamonas testosteroni CNB-2] Length = 238 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/220 (50%), Positives = 144/220 (65%), Gaps = 9/220 (4%) Query: 20 ASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFV-SPSAVLISAQGDRTLALSKQS 78 A AHQ+WL+ DG +A+L+FGEF DNLRE SPG LDKF+ +P+ +A G + L+ + + Sbjct: 21 AHAHQVWLENDGGQAQLFFGEFNDNLRETSPGALDKFLATPTLAQQTAGGTQQLSGRRNA 80 Query: 79 DAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAARLV---TSAAAQEPRLTL 135 FS +A + Q ++L A A YP+ + P W PAAR V T A A + L Sbjct: 81 TGFSYNATS-QAQTLFA-SASYPLIDRSKRNEPA-LLWVPAARWVATPTQAVAVNAQ-AL 136 Query: 136 DLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLVQFDLPWQGVYVAEVH 195 DL+PTG+PGQF V++ ALPKAKV +V PSGW +EA SDEQG V F LPW+G+YVAEVH Sbjct: 137 DLVPTGQPGQFMVSFNGQALPKAKVQIVAPSGWSREAQSDEQGRVNFALPWKGLYVAEVH 196 Query: 196 HTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAA 235 H+DK GE GK Y AS+VTTLS GM + PA P+A Sbjct: 197 HSDKQGGEAQGKRYGEASYVTTLSFSVKDGMPS-PALPSA 235 >ref|ZP_07042745.1| hypothetical protein CTS44_00998 [Comamonas testosteroni S44] gb|EFI63602.1| hypothetical protein CTS44_00998 [Comamonas testosteroni S44] Length = 253 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/220 (50%), Positives = 142/220 (64%), Gaps = 9/220 (4%) Query: 20 ASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFV-SPSAVLISAQGDRTLALSKQS 78 A AHQ+WL+ DG + +L+FGEF DNLRE SPG LDKF+ +P+ +A G L+ + + Sbjct: 36 AHAHQVWLENDGGQTQLFFGEFNDNLRETSPGALDKFLATPTLAQQTASGTLQLSGQRNA 95 Query: 79 DAFSLSAKAGQGESLVAEDAHYPVFENKHAATPTRTAWTPAARLV---TSAAAQEPRLTL 135 FS +A A Q ++L A A YP+ + P W PAAR V T A A + L Sbjct: 96 TGFSYNA-ANQAQTLFA-SASYPLIDRSKRNEPA-LLWVPAARWVATPTQAVAVNAQ-AL 151 Query: 136 DLLPTGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLVQFDLPWQGVYVAEVH 195 DL+PTG+PGQF V++ ALPKAKV +V PSGW +EA SDEQG V F LPW+G+YVAEVH Sbjct: 152 DLVPTGQPGQFMVSFNGQALPKAKVQIVAPSGWSREAQSDEQGRVNFALPWKGLYVAEVH 211 Query: 196 HTDKTAGERDGKPYDTASFVTTLSLVQAKGMKALPAAPAA 235 H+DK GE GK Y AS+VTTLS GM + PA P+A Sbjct: 212 HSDKQGGEAQGKRYGEASYVTTLSFSVKDGMPS-PALPSA 250