BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0037.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774268.1| C4-dicarboxylate transport transcription reg... 393 e-108 ref|YP_001352157.1| two-components system response regulator [Ja... 293 7e-78 ref|YP_001098760.1| putative C4-dicarboxylate transport transcri... 288 4e-76 ref|ZP_08274271.1| putative C4-dicarboxylate transport transcrip... 278 3e-73 gb|EGW61604.1| two component transcriptional regulator, LuxR fam... 228 5e-58 ref|YP_003448125.1| two-component response regulator [Azospirill... 217 8e-55 ref|YP_286196.1| LuxR response regulator receiver [Dechloromonas... 217 8e-55 emb|CAM75981.1| two component transcriptional regulator, LuxR fa... 214 7e-54 ref|ZP_08400906.1| two component transcriptional regulator luxr ... 206 1e-51 ref|YP_003167327.1| two component LuxR family transcriptional re... 205 3e-51 >ref|YP_003774268.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62360.1| C4-dicarboxylate transport transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 196 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG 60 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG Sbjct: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG 60 Query: 61 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE Sbjct: 61 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 Query: 121 ALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 ALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF Sbjct: 121 ALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 Query: 181 DKMNVKTAVELARLLK 196 DKMNVKTAVELARLLK Sbjct: 181 DKMNVKTAVELARLLK 196 >ref|YP_001352157.1| two-components system response regulator [Janthinobacterium sp. Marseille] gb|ABR89928.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 197 Score = 293 bits (751), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 147/197 (74%), Positives = 161/197 (81%), Gaps = 1/197 (0%) Query: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASP-GIDAEGECLLLDVRMP 59 MLHI+DDEE+IRDSL WLA+SR I ATAYDSG L L P +G+C+LLDVRMP Sbjct: 1 MLHIIDDEEVIRDSLMWLAKSRGIPATAYDSGKAFLTTLDTMPRATSPQGQCILLDVRMP 60 Query: 60 GTSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVL 119 SGVALF+ L ++GL PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+LMDR+ Sbjct: 61 EVSGVALFDLLTSRGLTQTFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRIQ 120 Query: 120 EALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHI 179 EALASS A A+ +RLAALS REREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHI Sbjct: 121 EALASSEHASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHI 180 Query: 180 FDKMNVKTAVELARLLK 196 FDKMNVKTAVELARLLK Sbjct: 181 FDKMNVKTAVELARLLK 197 >ref|YP_001098760.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Herminiimonas arsenicoxydans] emb|CAL60631.1| C4-dicarboxylate transport transcriptional regulatory protein DctR [Herminiimonas arsenicoxydans] Length = 196 Score = 288 bits (736), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 142/196 (72%), Positives = 160/196 (81%) Query: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG 60 MLHI+DDEE+IRDSL WLA+SR I A AYDSG LA L + +G+C+LLDVRMP Sbjct: 1 MLHIIDDEEVIRDSLMWLAKSRGIPAVAYDSGKAFLATLDSISRTTPQGQCVLLDVRMPD 60 Query: 61 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 SG+ALF+ L ++ + PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+LMDRV E Sbjct: 61 VSGIALFDLLSSRSMTQLFPVIFLTGHGDVPMAVDTLKRGAFDFFEKPFNDNKLMDRVQE 120 Query: 121 ALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 AL++S A A+ +RLAALS REREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHIF Sbjct: 121 ALSASEQASASVAIHTRLAALSGREREVLDLILEGKMNKVIADKLGISMRTVEVHRAHIF 180 Query: 181 DKMNVKTAVELARLLK 196 DKMNVKTAVELARLLK Sbjct: 181 DKMNVKTAVELARLLK 196 >ref|ZP_08274271.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Oxalobacteraceae bacterium IMCC9480] gb|EGF32244.1| putative C4-dicarboxylate transport transcriptional regulatory protein dctR [Oxalobacteraceae bacterium IMCC9480] Length = 195 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 143/196 (72%), Positives = 156/196 (79%), Gaps = 1/196 (0%) Query: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPG 60 MLHIVDDEE IRDSL+WLARSR IAA AYD LA L D G+C+LLD+RMP Sbjct: 1 MLHIVDDEEAIRDSLSWLARSRGIAAKAYDGADAFLATLD-QVAFDPAGDCVLLDIRMPD 59 Query: 61 TSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLE 120 TSG LF+ + + L R PVIFLTGHGDVPMAVD LK GAFDFFEKPFNDN+L+DRV E Sbjct: 60 TSGAVLFDIMARRKLTLRLPVIFLTGHGDVPMAVDSLKRGAFDFFEKPFNDNKLIDRVEE 119 Query: 121 ALASSRAGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAHIF 180 ALA+SR G + VQ RL +LS REREVLDLIL GKMNKVIAD+LGISMRTVEVHRAHIF Sbjct: 120 ALAASREAGVQAQVQVRLDSLSAREREVLDLILIGKMNKVIADQLGISMRTVEVHRAHIF 179 Query: 181 DKMNVKTAVELARLLK 196 DKMNVKTAVELA LLK Sbjct: 180 DKMNVKTAVELAGLLK 195 >gb|EGW61604.1| two component transcriptional regulator, LuxR family [Dechlorosoma suillum PS] Length = 200 Score = 228 bits (580), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 119/198 (60%), Positives = 148/198 (74%), Gaps = 8/198 (4%) Query: 3 HIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGTS 62 HI+DD+E IRD+L+WL +SR +A+ + S L A AS G +G CLLLD+RM G S Sbjct: 6 HIIDDDEAIRDALSWLLQSRGVASATWPSAEAFLEAWNAS-GESLQG-CLLLDIRMDGMS 63 Query: 63 GVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEAL 122 G+ LF L+ KGL + PVIFLTGHGDVPMAV LK GAFDF EKPFNDN+L++RV+EA+ Sbjct: 64 GLELFEHLQGKGL--KLPVIFLTGHGDVPMAVSSLKKGAFDFVEKPFNDNELVNRVIEAM 121 Query: 123 ASSRAGGAEDA----VQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAH 178 + + A VQSRL L+ RER++++LIL GK NKVIADEL ISMRTVEVHRAH Sbjct: 122 DADARNQEKQAISASVQSRLDTLTTRERQIMELILVGKFNKVIADELQISMRTVEVHRAH 181 Query: 179 IFDKMNVKTAVELARLLK 196 +F+KM V+TAVELA+LLK Sbjct: 182 LFEKMGVRTAVELAQLLK 199 >ref|YP_003448125.1| two-component response regulator [Azospirillum sp. B510] dbj|BAI71581.1| two-component response regulator [Azospirillum sp. B510] Length = 198 Score = 217 bits (552), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 115/198 (58%), Positives = 144/198 (72%), Gaps = 11/198 (5%) Query: 2 LHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGT 61 LHIVDD+E IRD+L WL +SRN+ + S L A D G CLLLD+RM G Sbjct: 4 LHIVDDDEAIRDALCWLFQSRNVPVAGWPSAEAFLEAWRP----DTAG-CLLLDIRMEGM 58 Query: 62 SGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEA 121 SG+ LF+ L +G R PVIFLTGHGDVP+AV LK GA DF EKPFNDN+L+DRV++A Sbjct: 59 SGLELFDRLLARG--SRMPVIFLTGHGDVPIAVGALKKGARDFVEKPFNDNELVDRVIDA 116 Query: 122 LASSRAGGAEDAVQS----RLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 LA+ +A Q+ RLA L+ RER+V++L++AG++NK+IADELGISMRTVEVHR+ Sbjct: 117 LAADAEQREREAGQAGLAARLATLTQRERQVMELVVAGRLNKIIADELGISMRTVEVHRS 176 Query: 178 HIFDKMNVKTAVELARLL 195 H+F+KM VKTAVEL RLL Sbjct: 177 HVFEKMRVKTAVELTRLL 194 >ref|YP_286196.1| LuxR response regulator receiver [Dechloromonas aromatica RCB] gb|AAZ47726.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas aromatica RCB] Length = 198 Score = 217 bits (552), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 116/199 (58%), Positives = 147/199 (73%), Gaps = 11/199 (5%) Query: 2 LHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGT 61 +++VDD+E IRD+LAWL +SR + +TA+DS T LAA + G C++LD+RM G Sbjct: 6 VYLVDDDEAIRDALAWLLKSRGLPSTAFDSAETFLAAW----NKEMSG-CVVLDMRMSGM 60 Query: 62 SGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEA 121 SG+ F+ L L PVIFLTGHGDVP+AV LK GAFDFFEKP NDN L+ R+ EA Sbjct: 61 SGLDCFDRLHE--LKSSLPVIFLTGHGDVPLAVATLKKGAFDFFEKPLNDNALVTRIEEA 118 Query: 122 LA---SSRAGGAE-DAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 +A RA A D+V++RL+ L+ RER++++L+LAGK NKVIADEL ISMRTVEVHRA Sbjct: 119 MALDAEQRAANATVDSVKARLSCLTTRERQIMELVLAGKFNKVIADELNISMRTVEVHRA 178 Query: 178 HIFDKMNVKTAVELARLLK 196 ++FDKM VKTAVELA LLK Sbjct: 179 NLFDKMQVKTAVELANLLK 197 >emb|CAM75981.1| two component transcriptional regulator, LuxR family [Magnetospirillum gryphiswaldense MSR-1] Length = 203 Score = 214 bits (544), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 117/198 (59%), Positives = 144/198 (72%), Gaps = 11/198 (5%) Query: 2 LHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGT 61 + IVDD+E IRD+L+WL +SR + A+DS L G+ CLLLD+RM G Sbjct: 6 VFIVDDDEAIRDALSWLFQSRGVPVRAFDSAEAFLTHW--RTGMSG---CLLLDIRMSGM 60 Query: 62 SGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEA 121 SG+ LF+ L+ VIFLTGHGDVPMAV LK GA DF EKPFNDN+L+DRV+EA Sbjct: 61 SGLDLFDRLRDAQ--SSLQVIFLTGHGDVPMAVSALKKGALDFVEKPFNDNELVDRVIEA 118 Query: 122 LA---SSRAGGAEDA-VQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRA 177 LA R A+ A + SRLAAL+ RER+V+DL+LAGK+NKVIAD+LGI+MRTVEVHRA Sbjct: 119 LAVAAQRREREADSAGIASRLAALTARERQVMDLVLAGKLNKVIADDLGITMRTVEVHRA 178 Query: 178 HIFDKMNVKTAVELARLL 195 H+F+KM VKTAVELA+LL Sbjct: 179 HVFEKMGVKTAVELAQLL 196 >ref|ZP_08400906.1| two component transcriptional regulator luxr family protein [Rubrivivax benzoatilyticus JA2] gb|EGJ09239.1| two component transcriptional regulator luxr family protein [Rubrivivax benzoatilyticus JA2] Length = 215 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 113/202 (55%), Positives = 145/202 (71%), Gaps = 7/202 (3%) Query: 1 MLHIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAA--SPGIDAEGECLLLDVRM 58 ++++VDDE+++RD+LAWL RSR + + + S A A +P DA CLLLDVRM Sbjct: 11 VVYLVDDEDVVRDALAWLLRSRRLLSEGFASAEAFEAFRAGCRAPWPDAPS-CLLLDVRM 69 Query: 59 PGTSGVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRV 118 PG SG+ALF L GL PVIFLTGHGDVP AV +K GAFDF EKPF++N L+DRV Sbjct: 70 PGQSGLALFEQLADGGLTETLPVIFLTGHGDVPTAVAAVKRGAFDFVEKPFSNNTLVDRV 129 Query: 119 LEA-LASSRAGG---AEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEV 174 +A L S+ A G A +AVQ LA L+ REREV+ L++ G+ NK IAD+L IS+RTVEV Sbjct: 130 EQALLVSAEALGRRRAAEAVQRSLADLTEREREVMRLVVEGRPNKGIADQLAISVRTVEV 189 Query: 175 HRAHIFDKMNVKTAVELARLLK 196 HRA +F+KMNVK+A+ELA LL+ Sbjct: 190 HRARVFEKMNVKSAIELANLLR 211 >ref|YP_003167327.1| two component LuxR family transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV35398.1| two component transcriptional regulator, LuxR family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 199 Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 112/197 (56%), Positives = 140/197 (71%), Gaps = 11/197 (5%) Query: 3 HIVDDEEIIRDSLAWLARSRNIAATAYDSGPTLLAALAASPGIDAEGECLLLDVRMPGTS 62 ++VDD++ IRDSL+WL SR + +Y S LAA P + CL+LD+RM G S Sbjct: 6 YLVDDDDAIRDSLSWLLESRGLHCLSYPSAEDFLAAW--DPSL---AGCLVLDIRMDGMS 60 Query: 63 GVALFNDLKTKGLLHRRPVIFLTGHGDVPMAVDMLKNGAFDFFEKPFNDNQLMDRVLEAL 122 G LF+ L +G PVIFLTGHGDVPMAV LK GAFDF EKP NDN+L+DRV+EAL Sbjct: 61 GPELFDILCERG--STLPVIFLTGHGDVPMAVSALKKGAFDFVEKPCNDNELVDRVIEAL 118 Query: 123 ASSR----AGGAEDAVQSRLAALSVREREVLDLILAGKMNKVIADELGISMRTVEVHRAH 178 A D+V + +A L+ REREV++L+LAGK+NKVIADEL ISMRTVEVHRA+ Sbjct: 119 KLDENRRVAASDADSVNTLIARLTCREREVMELVLAGKLNKVIADELQISMRTVEVHRAN 178 Query: 179 IFDKMNVKTAVELARLL 195 +F+KM V+TAVELA+LL Sbjct: 179 LFEKMGVRTAVELAQLL 195