BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0034.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ... 683 0.0 ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ... 584 e-165 ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm... 523 e-146 emb|CAM75978.1| Bacterial extracellular solute-binding protein, ... 506 e-141 ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Ma... 503 e-140 ref|YP_003448127.1| C4-dicarboxylate-binding periplasmic protein... 500 e-139 ref|ZP_07025073.1| TRAP dicarboxylate transporter, DctP subunit ... 500 e-139 ref|YP_002288294.1| C4-dicarboxylate-binding periplasmic protein... 498 e-139 ref|ZP_00056052.2| COG1638: TRAP-type C4-dicarboxylate transport... 493 e-137 ref|YP_428759.1| TRAP dicarboxylate transporter subunit DctP [Rh... 489 e-136 >ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/334 (99%), Positives = 334/334 (100%) Query: 1 MKLKSILLAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATQGRVK 60 MKLKSILLAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKAT+GRVK Sbjct: 1 MKLKSILLAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATKGRVK 60 Query: 61 IEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRV 120 IEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRV Sbjct: 61 IEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRV 120 Query: 121 TEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQM 180 TEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQM Sbjct: 121 TEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQM 180 Query: 181 RALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIV 240 RALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIV Sbjct: 181 RALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIV 240 Query: 241 NKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAE 300 NKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAE Sbjct: 241 NKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAE 300 Query: 301 WRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 334 WRKALLPVQQQMASRIGKDLIDAVNKESAALGQK Sbjct: 301 WRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 334 >ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] Length = 337 Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust. Identities = 283/327 (86%), Positives = 299/327 (91%) Query: 8 LAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATQGRVKIEVYPNS 67 LAM+AA ++S NA AQ PIVIKFSHVVANDTPKGKAAERFKEL EK +GRVK+E+YPNS Sbjct: 11 LAMSAALLMSGNAMAQTPIVIKFSHVVANDTPKGKAAERFKELVEKNLKGRVKVELYPNS 70 Query: 68 TLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRVTEGPIGK 127 TLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFE+FDLPYIFP K+VLYRVTEGPIGK Sbjct: 71 TLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFELFDLPYIFPGKDVLYRVTEGPIGK 130 Query: 128 DLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQMRALGANP 187 DLFKKLE KGITGLAYWDNGFKVMSANKPL PADF+GLKMRIQSSKVLDA+MRALGANP Sbjct: 131 DLFKKLESKGITGLAYWDNGFKVMSANKPLKTPADFKGLKMRIQSSKVLDAEMRALGANP 190 Query: 188 QVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDG 247 QVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQ +VTVSNHGYLGYAVIVNKKFWDG Sbjct: 191 QVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQSNVTVSNHGYLGYAVIVNKKFWDG 250 Query: 248 LPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLP 307 LP+DIRT LE AMKDATKYANAIAQQEND A+ AV K+GKT VY L D EKAEWRKALLP Sbjct: 251 LPADIRTGLEAAMKDATKYANAIAQQENDKAMEAVRKSGKTEVYVLNDKEKAEWRKALLP 310 Query: 308 VQQQMASRIGKDLIDAVNKESAALGQK 334 VQ+ M SRIGKDLI AV KE+ LG K Sbjct: 311 VQKDMESRIGKDLITAVGKEATTLGYK 337 >ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 248/312 (79%), Positives = 278/312 (89%) Query: 23 QQPIVIKFSHVVANDTPKGKAAERFKELAEKATQGRVKIEVYPNSTLYKDKEELEALQLG 82 QQPI+IKFSHVVANDTPKGK AERFKELAEKATQGRVK+EVYPNSTLYKDKEELEALQLG Sbjct: 31 QQPIIIKFSHVVANDTPKGKGAERFKELAEKATQGRVKVEVYPNSTLYKDKEELEALQLG 90 Query: 83 AVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRVTEGPIGKDLFKKLEPKGITGLA 142 +VQMLAPSLAKFGPLG +EFEVFDLPYIFP K VL RVTEGPIG+ LF+KLE KGI GLA Sbjct: 91 SVQMLAPSLAKFGPLGAREFEVFDLPYIFPDKAVLKRVTEGPIGQGLFQKLEGKGIKGLA 150 Query: 143 YWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTG 202 YWDNG KVM+AN+PLH ADFR LKMRIQSSKVLD Q RAL ANPQVLAFSEVYQA+QTG Sbjct: 151 YWDNGMKVMTANRPLHKVADFRALKMRIQSSKVLDEQFRALKANPQVLAFSEVYQAMQTG 210 Query: 203 VVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDGLPSDIRTQLEGAMKD 262 VVDG+EN PSN+YTQKMHEVQ ++TVS+HGY+GYAVIVNKKFW+ LP+DIR+QLE AMK Sbjct: 211 VVDGSENTPSNVYTQKMHEVQSNLTVSDHGYIGYAVIVNKKFWEALPADIRSQLEAAMKQ 270 Query: 263 ATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDLID 322 AT YAN IAQ+END ALAA++ +GKT VY L++ EKAEWR+ALLPV + MA+R+G DLI+ Sbjct: 271 ATLYANTIAQKENDDALAAIKASGKTRVYTLSEQEKAEWRRALLPVHKSMAARVGADLIE 330 Query: 323 AVNKESAALGQK 334 A+ KES A G K Sbjct: 331 AIYKESEAAGVK 342 >emb|CAM75978.1| Bacterial extracellular solute-binding protein, family 7 [Magnetospirillum gryphiswaldense MSR-1] Length = 335 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/334 (72%), Positives = 281/334 (84%) Query: 1 MKLKSILLAMTAAAIVSTNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATQGRVK 60 MK +++L + A + S +A A PIVIKFSHVVA DTPKGKAAE FK+LAE+ T+G VK Sbjct: 1 MKFRTLLGCLVAGVVASGSALAADPIVIKFSHVVAPDTPKGKAAEMFKKLAEERTKGAVK 60 Query: 61 IEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRV 120 +EVYPNS LYKDKEE+EALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFP+KEVL V Sbjct: 61 VEVYPNSQLYKDKEEMEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKEVLRAV 120 Query: 121 TEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQM 180 T+GP+G+ L KKLE KGI GLAYWDNGFKV+SANKP+ PAD +G+K+RIQSSKVLDAQM Sbjct: 121 TDGPVGQGLLKKLETKGIRGLAYWDNGFKVLSANKPIKTPADLKGVKLRIQSSKVLDAQM 180 Query: 181 RALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIV 240 RAL A PQ +AFSEVYQALQTGVVDGTENPPSN++TQKMHEVQKH TV+NHGYLGYAVIV Sbjct: 181 RALAALPQSMAFSEVYQALQTGVVDGTENPPSNMFTQKMHEVQKHATVTNHGYLGYAVIV 240 Query: 241 NKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAE 300 NKKFWDGLP+D R LEGAM +A+++ANAIAQQEND +LAA++ +GKT Y+ T E Sbjct: 241 NKKFWDGLPTDTRAVLEGAMNEASRFANAIAQQENDDSLAAMKASGKTEFYQPTKEELEA 300 Query: 301 WRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 334 WRKALLPV +M R+GK++I AV E+ LG K Sbjct: 301 WRKALLPVHAEMEGRVGKEIIQAVYAEATKLGFK 334 >ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticum AMB-1] dbj|BAE49699.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticum AMB-1] Length = 337 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/336 (72%), Positives = 283/336 (84%), Gaps = 2/336 (0%) Query: 1 MKLKSILLAMTAAAIVSTNAFAQQ--PIVIKFSHVVANDTPKGKAAERFKELAEKATQGR 58 MKL +++ AA +++ +A AQQ PIVIKFSHVVA DTPKGK AE FK+LAE+ T+GR Sbjct: 1 MKLGTLIAGAIAACVLAGSAMAQQAQPIVIKFSHVVAPDTPKGKGAEYFKKLAEERTKGR 60 Query: 59 VKIEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLY 118 VK+EVYPNS LYKDKEE+EALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFP+K+VL Sbjct: 61 VKVEVYPNSQLYKDKEEMEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLR 120 Query: 119 RVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDA 178 VT GP+G L KKLE KGI GLAYWDNGFK+MSANKP+ P+D +G+KMRIQSSKVLDA Sbjct: 121 SVTGGPVGASLLKKLEGKGIIGLAYWDNGFKIMSANKPIKAPSDLKGVKMRIQSSKVLDA 180 Query: 179 QMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAV 238 +MRALGA PQV+AFSEVYQALQTGVVDGTENPPSN+YTQKMHEVQKH T++NHGYLGYAV Sbjct: 181 EMRALGALPQVMAFSEVYQALQTGVVDGTENPPSNMYTQKMHEVQKHATMTNHGYLGYAV 240 Query: 239 IVNKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEK 298 IVNKKFW+GLP+DIR LEGAM +A+ +ANAIAQ END A+ A++ +GKT + + AE Sbjct: 241 IVNKKFWEGLPADIRATLEGAMSEASVFANAIAQTENDDAVKAMKASGKTEFHDPSAAEI 300 Query: 299 AEWRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 334 WRKALLPV + M R+GKDLI++ KE+A G K Sbjct: 301 EAWRKALLPVHKDMEGRVGKDLIESFYKEAAKFGFK 336 >ref|YP_003448127.1| C4-dicarboxylate-binding periplasmic protein [Azospirillum sp. B510] dbj|BAI71583.1| C4-dicarboxylate-binding periplasmic protein [Azospirillum sp. B510] Length = 340 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/339 (72%), Positives = 281/339 (82%), Gaps = 5/339 (1%) Query: 1 MKLKSILLAMTAAAIVS-----TNAFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKAT 55 MKL +L A ++S + A+AQ IVIKFSHVVA +TPKGK AE+FKELAE+ T Sbjct: 1 MKLVKLLCAAAVGCVMSAPMALSTAWAQDQIVIKFSHVVAPETPKGKGAEKFKELAERLT 60 Query: 56 QGRVKIEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKE 115 G+VK+EVYPNS LYKDKEELEALQLGAVQMLAPSLAKFGPLG KEFEVFDLPYIFP+KE Sbjct: 61 AGKVKVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGAKEFEVFDLPYIFPSKE 120 Query: 116 VLYRVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKV 175 VL RVT+G IGK LF+KLE KGI GLAYWDNGFK+MSANKPL P D +GLKMRIQSSKV Sbjct: 121 VLQRVTKGEIGKSLFRKLESKGIVGLAYWDNGFKIMSANKPLIKPEDVKGLKMRIQSSKV 180 Query: 176 LDAQMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLG 235 LDAQMRALGA PQV+AFSEVYQALQTGVVDGTENPPSN+YTQKMHEVQK+ T+++HGYLG Sbjct: 181 LDAQMRALGALPQVMAFSEVYQALQTGVVDGTENPPSNMYTQKMHEVQKNATLTDHGYLG 240 Query: 236 YAVIVNKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTD 295 YAVIVNKKFW+GLP+D+R +LE AMK+AT YAN IAQ END ALA ++ +GKT + T Sbjct: 241 YAVIVNKKFWEGLPADVRGKLEEAMKEATDYANDIAQNENDVALAQMKASGKTEFHSQTK 300 Query: 296 AEKAEWRKALLPVQQQMASRIGKDLIDAVNKESAALGQK 334 E+ W KAL PV + +R+GKDLI+A+ KESAA G K Sbjct: 301 EEREAWIKALKPVHKDAEARVGKDLIEAIYKESAAAGFK 339 >ref|ZP_07025073.1| TRAP dicarboxylate transporter, DctP subunit [Afipia sp. 1NLS2] gb|EFI52215.1| TRAP dicarboxylate transporter, DctP subunit [Afipia sp. 1NLS2] Length = 334 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/309 (77%), Positives = 267/309 (86%) Query: 25 PIVIKFSHVVANDTPKGKAAERFKELAEKATQGRVKIEVYPNSTLYKDKEELEALQLGAV 84 PIVIKFSHVVA +TPKGK AE+FKELAEK T G+VK+EVYPNS LYKDKEE+EALQLGAV Sbjct: 26 PIVIKFSHVVAPETPKGKGAEKFKELAEKYTNGKVKVEVYPNSQLYKDKEEVEALQLGAV 85 Query: 85 QMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRVTEGPIGKDLFKKLEPKGITGLAYW 144 QMLAPSLAKFGPLGVKEFEVFD+PYI P K L RVT G +GK L KLEPKGI GLA+W Sbjct: 86 QMLAPSLAKFGPLGVKEFEVFDIPYIMPDKAALNRVTHGEVGKKLLAKLEPKGIKGLAFW 145 Query: 145 DNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQTGVV 204 DNGFK+MSANKPLH P DFRGLKMRIQSSKVL+AQMRALG+ PQV+AFSEVYQALQTGVV Sbjct: 146 DNGFKIMSANKPLHKPEDFRGLKMRIQSSKVLEAQMRALGSIPQVMAFSEVYQALQTGVV 205 Query: 205 DGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDGLPSDIRTQLEGAMKDAT 264 DGTENPPSN+YTQKM+EVQKH T+SNHGYLGYAVIVNKKFWDGLP+D+R QLE AM DAT Sbjct: 206 DGTENPPSNMYTQKMNEVQKHATLSNHGYLGYAVIVNKKFWDGLPADVRGQLEKAMADAT 265 Query: 265 KYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDLIDAV 324 YAN IAQ+END ALAA++K G TT Y+LT E A WRKAL PV ++ SR+GK+LI Sbjct: 266 TYANDIAQKENDDALAAMQKAGTTTFYKLTPEETAAWRKALDPVADEVGSRVGKELIAEF 325 Query: 325 NKESAALGQ 333 KE+AA G+ Sbjct: 326 RKEAAASGK 334 >ref|YP_002288294.1| C4-dicarboxylate-binding periplasmic protein [Oligotropha carboxidovorans OM5] ref|YP_004633613.1| C4-dicarboxylate-binding periplasmic protein DctP [Oligotropha carboxidovorans OM5] gb|ACI92429.1| C4-dicarboxylate-binding periplasmic protein [Oligotropha carboxidovorans OM5] gb|AEI03795.1| C4-dicarboxylate-binding periplasmic protein DctP [Oligotropha carboxidovorans OM4] gb|AEI07372.1| C4-dicarboxylate-binding periplasmic protein DctP [Oligotropha carboxidovorans OM5] Length = 339 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/314 (76%), Positives = 267/314 (85%) Query: 20 AFAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATQGRVKIEVYPNSTLYKDKEELEAL 79 A AQ P+VIKFSHVVA +TPKGK AE+FKELAEK T G+VK+EVYPNS LYKDKEE+EAL Sbjct: 26 ASAQSPVVIKFSHVVAPETPKGKGAEKFKELAEKYTNGKVKVEVYPNSQLYKDKEEVEAL 85 Query: 80 QLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRVTEGPIGKDLFKKLEPKGIT 139 QLGAVQMLAPSLAKFGPLGVKEFEVFD+PYI P K L RVT G +GK L KLEPKGI Sbjct: 86 QLGAVQMLAPSLAKFGPLGVKEFEVFDIPYIMPDKAALKRVTHGEVGKKLLAKLEPKGIK 145 Query: 140 GLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQAL 199 GLAYWDNGFK+MSAN+PLH P DFRGLKMRIQSSKVL+AQMRALGA PQV+AFSEVYQAL Sbjct: 146 GLAYWDNGFKIMSANRPLHKPEDFRGLKMRIQSSKVLEAQMRALGAIPQVMAFSEVYQAL 205 Query: 200 QTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDGLPSDIRTQLEGA 259 QTGVVDGTENPPSN+YTQKM+EVQKH T+SNHGYLGYAVIVNKKFW+GLP D+R QLE A Sbjct: 206 QTGVVDGTENPPSNMYTQKMNEVQKHATLSNHGYLGYAVIVNKKFWEGLPDDVRGQLEKA 265 Query: 260 MKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKD 319 M +AT YAN IAQ+END ALAA++K G T Y LT E A WRKAL PV ++ +R+GKD Sbjct: 266 MAEATDYANDIAQKENDDALAAMKKAGTTNFYTLTAEETAAWRKALDPVADEIGNRVGKD 325 Query: 320 LIDAVNKESAALGQ 333 LI KE+AA G+ Sbjct: 326 LIAEFRKEAAASGK 339 >ref|ZP_00056052.2| COG1638: TRAP-type C4-dicarboxylate transport system, periplasmic component [Magnetospirillum magnetotacticum MS-1] Length = 337 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 239/334 (71%), Positives = 275/334 (82%), Gaps = 2/334 (0%) Query: 1 MKLKSILLAMTAAAIVSTNAFAQQ--PIVIKFSHVVANDTPKGKAAERFKELAEKATQGR 58 MK +++ + A ++S A AQQ PIVIKFSHVVA DTPKGKAAE FK+LAE+ T+GR Sbjct: 1 MKFGTLVAGIVAVCVLSCGAMAQQAQPIVIKFSHVVAPDTPKGKAAEYFKKLAEERTKGR 60 Query: 59 VKIEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLY 118 VK+EV+PNS LYKDKEELEALQLGA QMLAPSLAKFGPLG+KEFEVFDLPYIFP+K+VL Sbjct: 61 VKVEVFPNSMLYKDKEELEALQLGAAQMLAPSLAKFGPLGIKEFEVFDLPYIFPSKDVLR 120 Query: 119 RVTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDA 178 VT GP+G L KKLE KGI GLAYWDNGFK++SANKPL PAD +GLKMRIQSSKVLDA Sbjct: 121 AVTGGPVGASLLKKLETKGIIGLAYWDNGFKILSANKPLISPADLKGLKMRIQSSKVLDA 180 Query: 179 QMRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAV 238 +MRAL A PQ +AFSEVYQAL TGVV+GTENPPSN+YTQKMHEVQKH T++NHGYLGYAV Sbjct: 181 EMRALNAQPQPIAFSEVYQALLTGVVNGTENPPSNMYTQKMHEVQKHATLTNHGYLGYAV 240 Query: 239 IVNKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEK 298 IVNKKFWD LPSDIR LEGAM +AT YANAIAQ END AL A++ +GKT + T AE Sbjct: 241 IVNKKFWDSLPSDIRAILEGAMSEATVYANAIAQAENDDALKAMKASGKTEFHDPTPAEL 300 Query: 299 AEWRKALLPVQQQMASRIGKDLIDAVNKESAALG 332 WRK LLPV + M +R+GKDLI++ +E+ G Sbjct: 301 EVWRKTLLPVHRDMENRVGKDLIESFYREAIKFG 334 >ref|YP_428759.1| TRAP dicarboxylate transporter subunit DctP [Rhodospirillum rubrum ATCC 11170] gb|ABC24472.1| TRAP dicarboxylate transporter- DctP subunit [Rhodospirillum rubrum ATCC 11170] Length = 331 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 236/325 (72%), Positives = 274/325 (84%), Gaps = 1/325 (0%) Query: 1 MKLKSILLAMTAAAIVSTNA-FAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATQGRV 59 MKL + + +++ A A +PIVIKFSHVVA DTPKGKAAE FK+LAE+ T GRV Sbjct: 1 MKLSVFMGLILGGVMIAGGAQAADEPIVIKFSHVVAPDTPKGKAAEMFKKLAEEGTAGRV 60 Query: 60 KIEVYPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYR 119 K+EVYPNS LYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTK+VL Sbjct: 61 KVEVYPNSQLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKDVLRA 120 Query: 120 VTEGPIGKDLFKKLEPKGITGLAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQ 179 VT+GPIG L KKLE +GI GLAYWDNGFK+ SANKPL P D +G+KMRIQSSKVLDA+ Sbjct: 121 VTDGPIGASLLKKLEGRGIKGLAYWDNGFKIFSANKPLLKPDDLKGVKMRIQSSKVLDAE 180 Query: 180 MRALGANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVI 239 MRALGA PQV+AFSEVYQALQTGVVDGTENPPSN+YTQKMHEVQKH T++NHGYLGYAVI Sbjct: 181 MRALGALPQVMAFSEVYQALQTGVVDGTENPPSNMYTQKMHEVQKHATLTNHGYLGYAVI 240 Query: 240 VNKKFWDGLPSDIRTQLEGAMKDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKA 299 VNKKFW+GLP+DIR LE AM D+TK+ANAIAQQEND +LAA++ +GKT + ++ E Sbjct: 241 VNKKFWEGLPADIRAPLETAMADSTKFANAIAQQENDDSLAAMKASGKTEFHMPSEDELK 300 Query: 300 EWRKALLPVQQQMASRIGKDLIDAV 324 W+ ALLPV ++M R+GKDLI+++ Sbjct: 301 AWQDALLPVHKEMEGRVGKDLIESI 325