BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0028.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774275.1| site specific integrase/recombinase [Herbasp... 359 1e-97 ref|YP_004754211.1| site-specific tyrosine recombinase [Collimon... 319 8e-86 ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobact... 314 4e-84 ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp.... 309 8e-83 ref|YP_001098767.1| site-specific tyrosine recombinase [Herminii... 306 1e-81 ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formig... 291 2e-77 ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibi... 291 2e-77 ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formig... 290 5e-77 gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomal... 284 4e-75 ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burk... 283 5e-75 >ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 359 bits (921), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 177/177 (100%), Positives = 177/177 (100%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP Sbjct: 131 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 190 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL Sbjct: 191 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 250 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 307 >ref|YP_004754211.1| site-specific tyrosine recombinase [Collimonas fungivorans Ter331] gb|AEK63388.1| site-specific tyrosine recombinase [Collimonas fungivorans Ter331] Length = 312 Score = 319 bits (818), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 152/177 (85%), Positives = 166/177 (93%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAPDV+TPLGLRDR M+ELMYASGLRVSELVLLKS+EVGMNEGVLR+TGKG+KTRL+P Sbjct: 136 LLAAPDVATPLGLRDRTMLELMYASGLRVSELVLLKSLEVGMNEGVLRITGKGNKTRLLP 195 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEA +W++RYL +AR QI+ GQ+DDALFVTARGG MTRQMFWTLIKKYA +A + A L Sbjct: 196 FGEEARNWIVRYLKDARGQIMNGQMDDALFVTARGGAMTRQMFWTLIKKYAAKAAINAPL 255 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK LHAAHHPRG Sbjct: 256 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKALHAAHHPRG 312 >ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 314 bits (804), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 151/177 (85%), Positives = 165/177 (93%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAPDVSTPLGLRDR M+ELMYASGLRV+ELVLLKSIE+ +N+GV+RVTGKG+KTRLVP Sbjct: 128 LLAAPDVSTPLGLRDRTMLELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRLVP 187 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEA SW+ RYL EARAQIL GQ+DDALFVTARGGPMTRQMFW ++KK A++A + A L Sbjct: 188 FGEEARSWIERYLLEARAQILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIHAPL 247 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLK LHAAHHPRG Sbjct: 248 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKVLHAAHHPRG 304 >ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille] gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille] Length = 301 Score = 309 bits (792), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 149/177 (84%), Positives = 161/177 (90%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAPDV+TPLGLRDR M+ELMYASGLRV+ELVLLKS+EVGMNEGVLRVTGKG KTRL+P Sbjct: 125 LLAAPDVNTPLGLRDRTMLELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIP 184 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEA +W+ RYL EAR IL GQ+DDALFVTARGG MTRQMFWTLIKK+A A + A L Sbjct: 185 FGEEARAWIERYLKEARGAILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPL 244 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGH+DISTTQIYTHVARERLK+LH HHPRG Sbjct: 245 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKRLHQMHHPRG 301 >ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans] emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans] Length = 309 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 148/177 (83%), Positives = 158/177 (89%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAPDV+TPLGLRDR M+ELMYASGLRV+ELVLLKSIEVGMNEGVLR+TGKG KTRLVP Sbjct: 133 LLAAPDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVP 192 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEA W+ RYL EAR IL GQ+DDALFVTARG MTRQMFWTLIKK+A A + A L Sbjct: 193 FGEEARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPL 252 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQ+LLGH+DISTTQIYTHVARERLK LH HHPRG Sbjct: 253 SPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] Length = 303 Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/177 (80%), Positives = 154/177 (87%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL AP V PLGLRDR MIELMYASGLRVSELV LK +EVGMNEGVLR+ GKGSKTRLVP Sbjct: 117 LLIAPRVENPLGLRDRTMIELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSKTRLVP 176 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEA W+ RY+ E+R IL G+V D LFVTARG MTRQMFWTLI+KYALQ+G+ L Sbjct: 177 FGEEARIWIERYMRESRPFILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSGIHEPL 236 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA++RLKQLHA HHPRG Sbjct: 237 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAIHHPRG 293 >ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] Length = 309 Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 143/177 (80%), Positives = 153/177 (86%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL APDV TPLGLRDRAM+E++YASGLRVSELV LKS+ VG +E LRVTGKGSK RLVP Sbjct: 133 LLEAPDVDTPLGLRDRAMLEILYASGLRVSELVTLKSVNVGYSEAALRVTGKGSKERLVP 192 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEA WLMRYLAEARA IL GQ DALFVTARGGPMTRQ FW LIK++A AG+ L Sbjct: 193 FGEEAHGWLMRYLAEARAAILGGQASDALFVTARGGPMTRQAFWQLIKRHAGAAGIQVPL 252 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLR VQ+LLGHADISTT IYTHVARERLKQLH+ HHPRG Sbjct: 253 SPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVARERLKQLHSQHHPRG 309 >ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] Length = 312 Score = 290 bits (742), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 142/177 (80%), Positives = 154/177 (87%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LL APD LGLRDRAMIELMYASGLRVSELV LK +EVGMNEGVLR+ GKG KTRLVP Sbjct: 131 LLGAPDQEKSLGLRDRAMIELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTRLVP 190 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGEEA WL RY+ +AR+ IL G++ D LFVTARG MTRQMFWTLIKKYAL++G+ L Sbjct: 191 FGEEARVWLERYMQDARSLILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIHEPL 250 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVA++RLKQLHA HHPRG Sbjct: 251 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAMHHPRG 307 >gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 508 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 139/177 (78%), Positives = 152/177 (85%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAPDV TPLGLRDR M+ELMYASGLRVSELV LK++EVG+NEGV+RVTGKGSK RLVP Sbjct: 332 LLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVP 391 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGE A W+ RYL +AR +L + DALFVTARG MTRQ FW +IK++A QA V L Sbjct: 392 FGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHL 451 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGH+DISTTQIYTHVARERLK LHAAHHPRG Sbjct: 452 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPRG 508 >ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis C6786] Length = 325 Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 140/177 (79%), Positives = 152/177 (85%) Query: 1 LLAAPDVSTPLGLRDRAMIELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVP 60 LLAAPDV TPLGLRDR M+ELMYASGLRVSELV LKS+EVG+NEGV+RVTGKGSK RLVP Sbjct: 149 LLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLVP 208 Query: 61 FGEEAGSWLMRYLAEARAQILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARL 120 FGE A W+ RYL + R +L + DALFVTARG MTRQ FW +IK++A QA V A L Sbjct: 209 FGEVAHGWIERYLRDGRPALLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHL 268 Query: 121 SPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPRG 177 SPHTLRHAFATHLLNHGADLRVVQLLLGH+DISTTQIYTHVARERLK LHAAHHPRG Sbjct: 269 SPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLKTLHAAHHPRG 325