BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0019.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774285.1| transcription termination factor Rho protein... 839 0.0 ref|YP_001352312.1| transcription termination factor Rho [Janthi... 815 0.0 ref|YP_001099026.1| transcription termination factor Rho [Hermin... 814 0.0 ref|YP_004751529.1| transcription termination factor Rho [Collim... 813 0.0 ref|ZP_04575933.1| transcription termination factor Rho [Oxaloba... 782 0.0 ref|ZP_04578130.1| transcription termination factor Rho [Oxaloba... 776 0.0 ref|YP_004028994.1| transcription termination factor rho [Burkho... 757 0.0 ref|YP_001857184.1| transcription termination factor Rho [Burkho... 756 0.0 ref|YP_108115.1| transcription termination factor Rho [Burkholde... 756 0.0 ref|ZP_02355442.1| transcription termination factor Rho [Burkhol... 755 0.0 >ref|YP_003774285.1| transcription termination factor Rho protein [Herbaspirillum seropedicae SmR1] gb|ADJ62377.1| transcription termination factor Rho protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/412 (100%), Positives = 412/412 (100%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP Sbjct: 9 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK Sbjct: 69 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML Sbjct: 129 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE Sbjct: 189 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE Sbjct: 249 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE Sbjct: 309 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 412 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN Sbjct: 369 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 420 >ref|YP_001352312.1| transcription termination factor Rho [Janthinobacterium sp. Marseille] gb|ABR88881.1| Rho transcription termination factor [Janthinobacterium sp. Marseille] Length = 421 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/412 (96%), Positives = 407/412 (98%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVSALLEMAISLDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP Sbjct: 9 LHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGE PEASK Sbjct: 69 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 HRILFENLTPLHPNK L LERDMRGEENITGRIIDLIAP+G+GQRGLLVASPKSGKSVML Sbjct: 129 HRILFENLTPLHPNKPLLLERDMRGEENITGRIIDLIAPIGKGQRGLLVASPKSGKSVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAITTNHP+ VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE Sbjct: 189 QHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARN+E Sbjct: 249 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNIE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL+KSGTRRE Sbjct: 309 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 412 ELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRGN Sbjct: 369 ELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >ref|YP_001099026.1| transcription termination factor Rho [Herminiimonas arsenicoxydans] emb|CAL60899.1| transcription termination factor (ATP-dependent helicase rho) [Herminiimonas arsenicoxydans] Length = 421 Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/412 (96%), Positives = 407/412 (98%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVSALLEMAISLDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP Sbjct: 9 LHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGE PEASK Sbjct: 69 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEAPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 HRILFENLTPLHPNK L LERDMRGEENITGR+IDLIAP+G+GQRGLLVASPKSGKSV+L Sbjct: 129 HRILFENLTPLHPNKPLLLERDMRGEENITGRVIDLIAPIGKGQRGLLVASPKSGKSVIL 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAITTNHPD VMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE Sbjct: 189 QHIAHAITTNHPDVVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARN+E Sbjct: 249 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNIE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL+KSGTRRE Sbjct: 309 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGN 412 ELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMK+TKNNAEFFDMMRRGN Sbjct: 369 ELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN 420 >ref|YP_004751529.1| transcription termination factor Rho [Collimonas fungivorans Ter331] gb|AEK60706.1| Transcription termination factor Rho [Collimonas fungivorans Ter331] Length = 420 Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/411 (96%), Positives = 406/411 (98%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVSALLEMAI LDI+NAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP Sbjct: 9 LHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGE PEASK Sbjct: 69 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 HRILFENLTPLHPNK L LERDMRGEENITGRIID+IAP+G+GQRGLLVASPKSGKSVML Sbjct: 129 HRILFENLTPLHPNKPLPLERDMRGEENITGRIIDMIAPIGKGQRGLLVASPKSGKSVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE Sbjct: 189 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARN+E Sbjct: 249 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNIE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL+KSGTRRE Sbjct: 309 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 411 ELLIKPDQLQKIWVLRKL+Y MDEIEAMEFILDKMKSTKNNAEFFDMMRRG Sbjct: 369 ELLIKPDQLQKIWVLRKLLYSMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 419 >ref|ZP_04575933.1| transcription termination factor Rho [Oxalobacter formigenes HOxBLS] gb|EEO26895.1| transcription termination factor Rho [Oxalobacter formigenes HOxBLS] Length = 420 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/411 (90%), Positives = 402/411 (97%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVSALLEMA+SLDI+NAAR+RKQELMFAILKKRAK+GEQ++GDGALE+LPDGFGFLRSP Sbjct: 9 LHVSALLEMALSLDIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNG PPEASK Sbjct: 69 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGAPPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 HR+LFENLTPLHP++ L+LERD+ +ENITGRIID+IAP+G+GQRGLLVASPKSGK+V+L Sbjct: 129 HRMLFENLTPLHPDEPLKLERDISSQENITGRIIDMIAPIGKGQRGLLVASPKSGKTVIL 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QH+AHAIT NHPD + VLLIDERPEEVTEMQRSVRGEV+ASTFDEPATRHVQVAEMVLE Sbjct: 189 QHMAHAITANHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE Sbjct: 249 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL+KSGTRRE Sbjct: 309 EGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 411 ELLIKPDQLQKIW+LRKL+Y MDEIEAMEFILDKMK+TKNNA+FFD+MRRG Sbjct: 369 ELLIKPDQLQKIWILRKLLYGMDEIEAMEFILDKMKATKNNADFFDLMRRG 419 >ref|ZP_04578130.1| transcription termination factor Rho [Oxalobacter formigenes OXCC13] gb|EEO29103.1| transcription termination factor Rho [Oxalobacter formigenes OXCC13] Length = 420 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/411 (90%), Positives = 401/411 (97%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVSALLEMA+ L+I+NAAR+RKQELMFAILKKRAK+GEQ++GDGALE+LPDGFGFLRSP Sbjct: 9 LHVSALLEMALGLEIDNAARMRKQELMFAILKKRAKAGEQVYGDGALEILPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNG PPE SK Sbjct: 69 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGAPPEQSK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 HR+LFENLTPLHP++ L+LER++ +ENITGRIID+IAP+G+GQRGLLVASPKSGK+VML Sbjct: 129 HRLLFENLTPLHPDEPLKLEREISSQENITGRIIDMIAPIGKGQRGLLVASPKSGKTVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QH+AHAITTNHPD + VLLIDERPEEVTEMQRSVRGEV+ASTFDEPATRHVQVAEMVLE Sbjct: 189 QHMAHAITTNHPDVTLFVLLIDERPEEVTEMQRSVRGEVIASTFDEPATRHVQVAEMVLE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE Sbjct: 249 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTIIATAL+ETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL+KSGTRRE Sbjct: 309 EGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 411 ELLIKPDQLQKIW+LRKL+Y MDEIEAMEFILDKMK+TKNNA+FFD+MRRG Sbjct: 369 ELLIKPDQLQKIWILRKLLYGMDEIEAMEFILDKMKATKNNADFFDLMRRG 419 >ref|YP_004028994.1| transcription termination factor rho [Burkholderia rhizoxinica HKI 454] emb|CBW74850.1| Transcription termination factor rho [Burkholderia rhizoxinica HKI 454] Length = 420 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/410 (88%), Positives = 391/410 (95%) Query: 2 HVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPD 61 HVSAL+EMA L+IENA RLRKQELMFAILKKRAK+GE IFGDG LEVLPDGFGFLRSP+ Sbjct: 10 HVSALIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSPE 69 Query: 62 ASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASKH 121 SY+ASTDDIYISPSQIRRFNLHTGD+IEGEVRTPKDGERYFALVKVDKVNG+PPEASKH Sbjct: 70 TSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASKH 129 Query: 122 RILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVMLQ 181 +I+FENLTPLHPNK L LERD+RGEENIT RIID+IAP+G+GQRGLLVASPKSGK+VMLQ Sbjct: 130 KIMFENLTPLHPNKPLSLERDVRGEENITSRIIDMIAPIGKGQRGLLVASPKSGKTVMLQ 189 Query: 182 HIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLEK 241 HIAHAI +NHPD + VLLIDERPEEVTEMQRSV GEV+ASTFDEPA+RHVQVAEMV+EK Sbjct: 190 HIAHAIKSNHPDVTLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPASRHVQVAEMVIEK 249 Query: 242 AKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVEE 301 AKRLVEMK DVVILLDSITRLARAYNTV+PASGKVLTGGVDANALQRPKRFFGAARNVEE Sbjct: 250 AKRLVEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNVEE 309 Query: 302 GGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRREE 361 GGSLTII TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL+KSGTRREE Sbjct: 310 GGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSGTRREE 369 Query: 362 LLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 411 LLIKP+ LQKIWVLRK ++DMDEIEAMEF+LDK+K TK+N+EFFDMMRRG Sbjct: 370 LLIKPEILQKIWVLRKFIHDMDEIEAMEFLLDKLKQTKSNSEFFDMMRRG 419 >ref|YP_001857184.1| transcription termination factor Rho [Burkholderia phymatum STM815] gb|ACC70138.1| transcription termination factor Rho [Burkholderia phymatum STM815] Length = 420 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/411 (87%), Positives = 392/411 (95%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVS L+EMA L+IE+A RLRKQELMFAILKKRAK+GE IFGDG LEVLPDGFGFLRSP Sbjct: 9 LHVSQLIEMANGLEIESANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 + SY+ASTDDIYISPSQIRRFNLHTGD+IEGEVRTPKDGERYFALVKVDKVNG+PPEASK Sbjct: 69 ETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 H+I+FENLTPLHPNK+L LER+MRGEEN+TGRIID+IAP+G+GQRGLLVASPKSGK+VML Sbjct: 129 HKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAI NHPD ++ VLLIDERPEEVTEMQRSV GEV+ASTFDEPA RHVQVAEMV+E Sbjct: 189 QHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHVQVAEMVIE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMK DVVILLDSITRLARAYNTV+PASGKVLTGGVDANALQRPKRFFGAARN+E Sbjct: 249 KAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNIE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTII TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL+KSGTRRE Sbjct: 309 EGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 411 ELLIKP+ LQKIWVLRK ++DMDE+EAMEF+LDK++ TKNNAEFFDMMRRG Sbjct: 369 ELLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDMMRRG 419 >ref|YP_108115.1| transcription termination factor Rho [Burkholderia pseudomallei K96243] ref|YP_333770.1| transcription termination factor Rho [Burkholderia pseudomallei 1710b] ref|YP_001059245.1| transcription termination factor Rho [Burkholderia pseudomallei 668] ref|YP_001066512.1| transcription termination factor Rho [Burkholderia pseudomallei 1106a] ref|ZP_01764333.1| transcription termination factor Rho [Burkholderia pseudomallei 305] ref|ZP_02402478.1| transcription termination factor Rho [Burkholderia pseudomallei DM98] ref|ZP_02411013.1| transcription termination factor Rho [Burkholderia pseudomallei 14] ref|ZP_02447109.1| transcription termination factor Rho [Burkholderia pseudomallei 91] ref|ZP_02455310.1| transcription termination factor Rho [Burkholderia pseudomallei 9] ref|ZP_02470888.1| transcription termination factor Rho [Burkholderia pseudomallei B7210] ref|ZP_02481325.1| transcription termination factor Rho [Burkholderia pseudomallei 7894] ref|ZP_02489580.1| transcription termination factor Rho [Burkholderia pseudomallei NCTC 13177] ref|ZP_02497706.1| transcription termination factor Rho [Burkholderia pseudomallei 112] ref|ZP_02505731.1| transcription termination factor Rho [Burkholderia pseudomallei BCC215] ref|ZP_03453420.1| transcription termination factor Rho [Burkholderia pseudomallei 576] ref|ZP_03792934.1| transcription termination factor Rho [Burkholderia pseudomallei Pakistan 9] ref|YP_002897020.1| transcription termination factor Rho [Burkholderia pseudomallei MSHR346] ref|ZP_04815180.1| transcription termination factor Rho [Burkholderia pseudomallei 1106b] ref|ZP_04886130.1| transcription termination factor Rho [Burkholderia pseudomallei 1655] ref|ZP_04895588.1| transcription termination factor Rho [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04903624.1| transcription termination factor Rho [Burkholderia pseudomallei S13] ref|ZP_04952964.1| transcription termination factor Rho [Burkholderia pseudomallei 1710a] ref|ZP_04964863.1| transcription termination factor Rho [Burkholderia pseudomallei 406e] emb|CAH35496.1| transcription termination factor rho [Burkholderia pseudomallei K96243] gb|ABA50387.1| transcription termination factor Rho [Burkholderia pseudomallei 1710b] gb|ABN82335.1| transcription termination factor Rho [Burkholderia pseudomallei 668] gb|ABN89552.1| transcription termination factor Rho [Burkholderia pseudomallei 1106a] gb|EBA51347.1| transcription termination factor Rho [Burkholderia pseudomallei 305] gb|EDO84951.1| transcription termination factor Rho [Burkholderia pseudomallei 406e] gb|EDO92426.1| transcription termination factor Rho [Burkholderia pseudomallei Pasteur 52237] gb|EDS86636.1| transcription termination factor Rho [Burkholderia pseudomallei S13] gb|EDU07114.1| transcription termination factor Rho [Burkholderia pseudomallei 1655] gb|EEC35676.1| transcription termination factor Rho [Burkholderia pseudomallei 576] gb|EEH26746.1| transcription termination factor Rho [Burkholderia pseudomallei Pakistan 9] gb|ACQ97424.1| transcription termination factor Rho [Burkholderia pseudomallei MSHR346] gb|EES25805.1| transcription termination factor Rho [Burkholderia pseudomallei 1106b] gb|EET09983.1| transcription termination factor Rho [Burkholderia pseudomallei 1710a] Length = 420 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/411 (87%), Positives = 392/411 (95%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVS L+EMA L+IENA RLRKQELMFAILKKRAK+GE IFGDG LEVLPDGFGFLRSP Sbjct: 9 LHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 + SY+ASTDDIYISPSQIRRFNLHTGD+IEGEVRTPKDGERYFALVKVDKVNG+PPEASK Sbjct: 69 EMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 H+I+FENLTPLHPNK L LER+MRGEEN+TGRIID+IAP+G+GQRGLLVASPKSGK+VML Sbjct: 129 HKIMFENLTPLHPNKPLSLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASPKSGKTVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAI NHPD ++ VLLIDERPEEVTEMQRSV GEV+ASTFDEPATRHVQVAEMV+E Sbjct: 189 QHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHVQVAEMVIE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMK DVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARN+E Sbjct: 249 KAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNIE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTII TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL+KSGTRRE Sbjct: 309 EGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 411 E+LIKP+ LQKIWVLRK ++DMDE+EAMEF+LDK++ TKNNAEFFD+MRRG Sbjct: 369 EMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDLMRRG 419 >ref|ZP_02355442.1| transcription termination factor Rho [Burkholderia oklahomensis EO147] ref|ZP_02362586.1| transcription termination factor Rho [Burkholderia oklahomensis C6786] Length = 420 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/411 (87%), Positives = 392/411 (95%) Query: 1 MHVSALLEMAISLDIENAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSP 60 +HVS L+EMA L+IENA RLRKQELMFAILKKRAK+GE IFGDG LEVLPDGFGFLRSP Sbjct: 9 LHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPDGFGFLRSP 68 Query: 61 DASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGEPPEASK 120 + SY+ASTDDIYISPSQIRRFNLHTGD+IEGEVRTPKDGERYFALVKVDKVNG+PPEASK Sbjct: 69 EMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVNGQPPEASK 128 Query: 121 HRILFENLTPLHPNKLLQLERDMRGEENITGRIIDLIAPVGRGQRGLLVASPKSGKSVML 180 H+I+FENLTPLHPNK L LER+MRGEEN+TGRI+D+IAP+G+GQRGLLVASPKSGK+VML Sbjct: 129 HKIMFENLTPLHPNKPLALEREMRGEENVTGRIVDMIAPIGKGQRGLLVASPKSGKTVML 188 Query: 181 QHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLE 240 QHIAHAI NHPD ++ VLLIDERPEEVTEMQRSV GEV+ASTFDEPATRHVQVAEMV+E Sbjct: 189 QHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHVQVAEMVIE 248 Query: 241 KAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNVE 300 KAKRLVEMK DVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARN+E Sbjct: 249 KAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNIE 308 Query: 301 EGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLSKSGTRRE 360 EGGSLTII TALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYP+INL+KSGTRRE Sbjct: 309 EGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINLNKSGTRRE 368 Query: 361 ELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRG 411 E+LIKP+ LQKIWVLRK ++DMDE+EAMEF+LDK++ TKNNAEFFD+MRRG Sbjct: 369 EMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKNNAEFFDLMRRG 419