BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0017.p (924 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774287.1| inactivated superfamily I helicase [Herbaspi... 1841 0.0 ref|YP_004751531.1| hypothetical protein CFU_0875 [Collimonas fu... 920 0.0 ref|YP_001352314.1| hypothetical protein mma_0624 [Janthinobacte... 883 0.0 ref|YP_001099028.1| hypothetical protein HEAR0707 [Herminiimonas... 852 0.0 ref|ZP_08275523.1| hypothetical protein IMCC9480_455 [Oxalobacte... 550 e-154 ref|ZP_07677074.1| conserved hypothetical protein [Ralstonia sp.... 509 e-141 ref|YP_002981089.1| hypothetical protein Rpic12D_1125 [Ralstonia... 505 e-140 emb|CBJ38438.1| putative helicase, C_term RecB family exonucleas... 501 e-139 ref|NP_519310.1| hypothetical protein RSc1189 [Ralstonia solanac... 499 e-139 ref|YP_296323.1| DNA helicase/exodeoxyribonuclease V, subunit B ... 493 e-137 >ref|YP_003774287.1| inactivated superfamily I helicase [Herbaspirillum seropedicae SmR1] gb|ADJ62379.1| inactivated superfamily I helicase [Herbaspirillum seropedicae SmR1] Length = 924 Score = 1841 bits (4768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 917/924 (99%), Positives = 921/924 (99%) Query: 1 MLSATVPIPPSPEFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60 MLSATVPIPPSP+FWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK Sbjct: 1 MLSATVPIPPSPDFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60 Query: 61 TALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR 120 ALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR Sbjct: 61 AALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR 120 Query: 121 RNADLLPLAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLAPLAPSAHAMLS 180 RNADLLPLAHTLLDLSDELSLALLPEIRASAGE+AIAGRWTQALAQLLAPLAPSAHAMLS Sbjct: 121 RNADLLPLAHTLLDLSDELSLALLPEIRASAGEDAIAGRWTQALAQLLAPLAPSAHAMLS 180 Query: 181 EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH 240 EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH Sbjct: 181 EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH 240 Query: 241 QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAPSALP 300 QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPP+ASAAAPSALP Sbjct: 241 QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPEASAAAPSALP 300 Query: 301 LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW 360 LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW Sbjct: 301 LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW 360 Query: 361 KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIA 420 KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIA Sbjct: 361 KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIA 420 Query: 421 GDWQALQTAFADASDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALRE 480 GDWQALQTAFADA DPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALRE Sbjct: 421 GDWQALQTAFADARDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALRE 480 Query: 481 DGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGA 540 DGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGA Sbjct: 481 DGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGA 540 Query: 541 RLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCINP 600 RLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCINP Sbjct: 541 RLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCINP 600 Query: 601 EVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSA 660 EVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSA Sbjct: 601 EVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSA 660 Query: 661 PDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSDMPEKRDYGSWLHEILYKYHAH 720 PDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELS+MPEKRDYGSWLHEILYKYHAH Sbjct: 661 PDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSEMPEKRDYGSWLHEILYKYHAH 720 Query: 721 LRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQ 780 LRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQ Sbjct: 721 LRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQ 780 Query: 781 FAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQ 840 FAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQ Sbjct: 781 FAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQ 840 Query: 841 LAFYGLLAGGAIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAAL 900 LAFYGLLAGG IEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAAL Sbjct: 841 LAFYGLLAGGVIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAAL 900 Query: 901 PANGIESVCQYCEMRGLCRKGAWL 924 PANGIESVCQYCEMRGLCRKGAWL Sbjct: 901 PANGIESVCQYCEMRGLCRKGAWL 924 >ref|YP_004751531.1| hypothetical protein CFU_0875 [Collimonas fungivorans Ter331] gb|AEK60708.1| hypothetical protein CFU_0875 [Collimonas fungivorans Ter331] Length = 934 Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/897 (54%), Positives = 616/897 (68%), Gaps = 38/897 (4%) Query: 42 DFSGVQLMVPAFSHAQNFKTALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLM 101 DF+ ++++P F+HAQ K ALS +L ++ P+ TLSG LA PP + P+ SERLM Sbjct: 60 DFAQWRVVLPTFAHAQPLKAALSAQLGGTFVPPQFFTLSGWLATLPPLPNVLPA-SERLM 118 Query: 102 QLYAQLREHGWLKKMFSARRNADLLPLAHTLLDLSDELSLALLPEIRASAGEEAIAGRWT 161 +LYA+LR+HGWLKK+F+ARRN DLLPLA TLL LSDEL+ ALLP + A + RW Sbjct: 119 RLYAELRQHGWLKKLFTARRNTDLLPLAQTLLALSDELTQALLPALHIDAANDP-EQRWQ 177 Query: 162 QALAQLLAPLAPSAHAMLSEEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWV 221 AL QL +P A +LS+E LVW IWK QLDA D I RF ML +A AS P+ W+ Sbjct: 178 HALEQL----SPDARKLLSDETQLVWSIWKSQLDADDAIAARFAQMLQIAENASQPMAWI 233 Query: 222 SPTEPEPLDAAFLAAYAQHQPVRIVTLDWSRAAMAPLYPLYLSAWGELVR---EEEGPAP 278 S PEPL+ AFL AYA+ Q V +TLDW A L P Y AW E+V +EE P Sbjct: 234 SSVAPEPLEQAFLDAYARRQQVLTITLDWRAPA---LLPTYAQAWPEMVEAAADEENPEG 290 Query: 279 AYEEFAASAPPDASAAAPSALPLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRV 338 A SA AL L C A +E+ AVQ AQ+V+ WL++GK+ +AIVAQDRV Sbjct: 291 KIGGHAVSA----------ALAL-CAARSVEDEAVQGAQMVIDWLREGKSSVAIVAQDRV 339 Query: 339 TARRLRALLERAQVSVADETGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFP 398 ARR+RALLERAQ+ VADETGWKLSTTRAA+A++AW D+V+ARGET ALLDLLKSPFV Sbjct: 340 VARRIRALLERAQIHVADETGWKLSTTRAASAISAWFDVVTARGETTALLDLLKSPFVLN 399 Query: 399 ADP---------GRADR---VMRIEARLRRANIAGDWQALQTAFADASDPDDLQCILTLA 446 P G A++ VM+IE LRRAN+ G+W+A+ A A P + + + LA Sbjct: 400 EAPSGLLHDAQDGVANKSALVMKIELLLRRANVLGEWRAVINALTAA--PAEQKTVALLA 457 Query: 447 RQAARFGGRKTLSQWCETQRRLCEALGMDAALREDGAGQQCLLMLDEIAAEQGALQDQFS 506 +QAA F GRK L W +ALG+ AAL D AGQQ L +L IA FS Sbjct: 458 QQAALFSGRKNLRDWIAATAAALDALGISAALSADSAGQQILQLLQNIAPPGNDFAALFS 517 Query: 507 FAEWRALLNLRLDATSYMPPIKDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETL 566 F EWRAL+NL+LD TS++ I DRRVVMLPLNGARLR FDAVLV+GADA HLPS PQETL Sbjct: 518 FPEWRALVNLQLDDTSFISAINDRRVVMLPLNGARLRTFDAVLVVGADADHLPSQPQETL 577 Query: 567 FFSNAVRRELNLATRATRQRQQLRDLVELLCINPEVVLCWQTHQDGEPNPVSPWIERLEL 626 FF+N VRREL LATR +RQRQQLRD+VELL +NP+VVL WQ H+DGEPNPVSPWI+RL+L Sbjct: 578 FFANTVRRELGLATRESRQRQQLRDVVELLAMNPQVVLSWQAHKDGEPNPVSPWIQRLQL 637 Query: 627 KLAQQGAAPLQRLELPPPVQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFAQ 686 LA+ A L Q L A P++MPAP+AP L P L+AS + SF+ACPYQFFA+ Sbjct: 638 TLARSEAPALPERRAAIASQSLLATPTTMPAPAAPQLTPSRLTASAYNSFIACPYQFFAR 697 Query: 687 RMLRVAVMDELSDMPEKRDYGSWLHEILYKYHAHLRDNDTPLPARAALLAQFSEEVFQRE 746 RML +A +DELSD+PEKRDYG WLHEIL YH LRD PL R +LL S+++F Sbjct: 698 RMLGLASLDELSDLPEKRDYGGWLHEILETYHETLRDQPCPLDQRESLLVDISKKLFDSV 757 Query: 747 MQRHPAALAFHARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDGGIELYGRLD 806 + ++ AAL +++RWQKV+ AY++WANE EA+GW F FGE++ + + D + L+GR+D Sbjct: 758 IAKNAAALGYYSRWQKVISAYVVWANEHEAQGWSFVFGEQAYEKPMALPDRELMLHGRID 817 Query: 807 RVDRNEQGQRALLDYKTRSAASLRQKVKEDDDHQLAFYGLLAGGAIEHAHYVALELGPDK 866 RVD N+ G+RA+LDYKT + L +K+K+ +DHQLAFYGLL+ + AHYVALE D Sbjct: 818 RVDENDAGERAVLDYKTNNLGVLNKKLKDHEDHQLAFYGLLSDRPVAAAHYVALETTKD- 876 Query: 867 KTGDAAAPDFARRQKMLQQQITTTMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 923 K GD +APD+ Q+ L QI+ +QA+A G LPANG+ SVCQYC++RGLCRKGAW Sbjct: 877 KVGDVSAPDYDEAQRALAAQISVNVQAIARGVGLPANGVASVCQYCDVRGLCRKGAW 933 >ref|YP_001352314.1| hypothetical protein mma_0624 [Janthinobacterium sp. Marseille] gb|ABR90456.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 892 Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/924 (52%), Positives = 606/924 (65%), Gaps = 33/924 (3%) Query: 1 MLSATVPIPPSPEFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60 ML +TV IPPS FW A R LL L Q+ A D S ++++V F+H Q K Sbjct: 1 MLHSTVLIPPSAAFWDDAARALLQ-SDLLADTRQS---AVRDLSSLRVVVSTFAHIQLLK 56 Query: 61 TALSRELRRPYIAPRINTLSGLLAMQPP-GEDAPPSESERLMQLYAQLREHGWLKKMFSA 119 +AL R+L +I P I +LS + + PP + SERLM LYA LR+H WLKK+FSA Sbjct: 57 SALGRQLGGAFIPPTITSLSEYIRLLPPQAGTTAAAPSERLMSLYADLRQHAWLKKLFSA 116 Query: 120 RRNADLLPLAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLAPLAPSAHAML 179 RRN DLLPLA LL LSDEL+ A+LPE++ S + RW AL QL +P A +L Sbjct: 117 RRNTDLLPLAEILLTLSDELTQAMLPELKVS--PDVADARWQAALEQL----SPVARNLL 170 Query: 180 SEEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQ 239 S+E LVW IWK QLDA D IV RF M+ +AA+A LPL W+SP + L+ AFL AY Q Sbjct: 171 SDETQLVWTIWKSQLDASDAIVHRFAQMMRIAAQAQLPLFWISPVAADALEQAFLDAYQQ 230 Query: 240 HQPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAPSAL 299 +PV +TLDW + Y +AW E++ + P D A P L Sbjct: 231 QRPVVAITLDWHAQYINTTYA---AAWPEMLDD-------------VVPADLPLATPPGL 274 Query: 300 PLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETG 359 L A +LE A AQ ++ WLQQGK IAIVAQDRV ARR+RALLERAQV VADETG Sbjct: 275 SLYA-AHNLEAEAKAGAQTIMDWLQQGKTNIAIVAQDRVVARRIRALLERAQVIVADETG 333 Query: 360 WKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANI 419 WKLSTTRAAAALA+W +LV+AR ET ALLD LKSPFVF +AD VM E LRRAN+ Sbjct: 334 WKLSTTRAAAALASWLELVAARAETIALLDFLKSPFVFANTDNKADLVMASELALRRANV 393 Query: 420 AGDWQALQTAFADASDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDAALR 479 G W+ + A P + LA+QA F KTL W ++ +ALGM AL+ Sbjct: 394 LGGWELVGDALTVI--PAAQNMVKLLAQQATGFSKGKTLCDWITASQQTLDALGMRGALQ 451 Query: 480 EDGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLPLNG 539 DGAG Q L +L +I + A+ FSFAEWRA LNL+L+AT+Y+ +DRRVVMLPLNG Sbjct: 452 ADGAGAQVLQLLQDIEQDCTAVGHVFSFAEWRAFLNLQLEATAYVQLNRDRRVVMLPLNG 511 Query: 540 ARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELLCIN 599 ARLR FDAVL++GADA HLPS P ETLFF+N VRREL LATR +RQRQQLRD+ ELL N Sbjct: 512 ARLRSFDAVLLVGADAEHLPSQPTETLFFANVVRRELGLATRESRQRQQLRDVTELLAAN 571 Query: 600 PEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPS 659 +V++ WQ H++GEPNPVSPWIERLEL LA+ G + R + + L +P +MPAP Sbjct: 572 EQVLMSWQAHKNGEPNPVSPWIERLELSLARAGLPKIARHHVGIAPRHLTPVPLTMPAPH 631 Query: 660 APDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSDMPEKRDYGSWLHEILYKYHA 719 A L P LSASG+ S +ACPYQFFA RML ++ +DELSDMPEKRDYG WLH+IL +H Sbjct: 632 AAALRPHKLSASGYNSLVACPYQFFATRMLGLSGLDELSDMPEKRDYGDWLHQILAIFHT 691 Query: 720 HLRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGW 779 L ++ L RA LL + S++VF + + AAL ++ARWQK MPAYL W EREA+GW Sbjct: 692 RL--HEVTLAGRATLLREISDQVFGLALDKSAAALGYYARWQKAMPAYLEWLAEREAQGW 749 Query: 780 QFAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKEDDDH 839 F GEE + L+W DG I L+GR+DR+D N G+RA+LDYK+ + ++LR K+K+ +DH Sbjct: 750 HFVLGEEKFEKILRWDDGEIILHGRVDRMDENATGERAVLDYKSTNQSALRDKLKQGEDH 809 Query: 840 QLAFYGLLAGGAIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAA 899 QL FYGLL+ + +A Y+ LE D K + +PD+ Q+ L QI ++M+A+AH A Sbjct: 810 QLPFYGLLSDVPLSNALYIPLEASKD-KIKEVESPDYDNWQQSLSVQIASSMRAIAHDAP 868 Query: 900 LPANGIESVCQYCEMRGLCRKGAW 923 +PA G ESVCQYC++RGLCRKGAW Sbjct: 869 MPATGPESVCQYCDVRGLCRKGAW 892 >ref|YP_001099028.1| hypothetical protein HEAR0707 [Herminiimonas arsenicoxydans] emb|CAL60901.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 854 Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/879 (51%), Positives = 586/879 (66%), Gaps = 28/879 (3%) Query: 48 LMVPAFSHAQNFKTALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQL 107 ++V F+H Q K AL+R++ +I P + +LS + PP + SERLM LYA L Sbjct: 1 MLVSTFAHIQLLKNALARQIDGAFIPPTMTSLSEYIRQLPPDGATATAASERLMSLYADL 60 Query: 108 REHGWLKKMFSARRNADLLPLAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQL 167 R+H WLKK+FSARRN DLLPLA LL LSDEL+ A+LP ++AS +A RW AL QL Sbjct: 61 RQHAWLKKLFSARRNTDLLPLAEILLALSDELTQAMLPSLKASP--DAGYARWQAALEQL 118 Query: 168 LAPLAPSAHAMLSEEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASL---PLIWVSPT 224 +P A +LS+E LVW IWK QLDA D V R+ M+ L + PL W+SP Sbjct: 119 ----SPVARNLLSDETQLVWTIWKSQLDASDANVIRYAQMMRLVQQVEHIQQPLFWISPV 174 Query: 225 EPEPLDAAFLAAYAQHQPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFA 284 P+ ++ AFL AY Q + ++TLDW + ++ Y +AW E++ +E A Sbjct: 175 APDAMEQAFLDAYGARQALTVLTLDWHAHS---VHSTYAAAWPEMLVDEMDSAAL----- 226 Query: 285 ASAPPDASAAAPSALPLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLR 344 S A P L L A ++E A AQ V+ WLQQGK IAIVAQDRV ARR+R Sbjct: 227 -------SLATPPGLKLHA-AQNMEAEARAGAQTVIDWLQQGKTNIAIVAQDRVVARRIR 278 Query: 345 ALLERAQVSVADETGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRA 404 ALLERAQ+ VADETGWKLSTTRAA+A+AAW +LV+AR ET LLD LKSPFVF +A Sbjct: 279 ALLERAQIVVADETGWKLSTTRAASAIAAWLELVAARAETVGLLDFLKSPFVFADMADKA 338 Query: 405 DRVMRIEARLRRANIAGDWQALQTAFADASDPDDLQCILTLARQAARFGGRKTLSQWCET 464 + VM E L+RA + W+A+ A A P + + LA+QAA F GRKTL +W Sbjct: 339 ELVMVSEIALQRAKVLSGWEAVSDALTAA--PAAQKMMTLLAQQAAGFTGRKTLCEWIAA 396 Query: 465 QRRLCEALGMDAALREDGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYM 524 +++ LGM AL+ D AG Q L +L ++A + + FSFAEWRA LNL+L+A +++ Sbjct: 397 TQQMLVTLGMRDALQADAAGAQLLQLLQDVAQDCVQVGHTFSFAEWRAFLNLQLEAKAFV 456 Query: 525 PPIKDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATR 584 +D+RVVMLPLNGARLR FDAVL++GADA HLPS P ETLFF+N VRREL LATR +R Sbjct: 457 QVNQDKRVVMLPLNGARLRSFDAVLLVGADAEHLPSQPMETLFFANVVRRELGLATRESR 516 Query: 585 QRQQLRDLVELLCINPEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQRLELPPP 644 QRQQLRD+ ELL N VVL WQ H++GEPNPVSPWIERLEL LA+ APL + E+ Sbjct: 517 QRQQLRDVTELLSANDCVVLSWQAHKNGEPNPVSPWIERLELCLARACLAPLAKHEVQIA 576 Query: 645 VQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDELSDMPEKR 704 + L+ P MPAP+AP LLP LSASG+ S +ACPYQFFA RML ++ +D++SDMPEKR Sbjct: 577 PRHLQPTPVLMPAPAAPQLLPQKLSASGYNSLVACPYQFFATRMLGLSGIDDVSDMPEKR 636 Query: 705 DYGSWLHEILYKYHAHLRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVM 764 DYG WLH+IL ++H L++ PL RA LL Q S+ +F E+ + AAL ++ARWQK M Sbjct: 637 DYGDWLHKILAQFHQTLQEAPVPLAERAPLLQQISDRIFAHELDKSAAALGYYARWQKAM 696 Query: 765 PAYLLWANEREAEGWQFAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKTR 824 PAYL W ERE++GW F GEE + L+W DG I L+GR+DR+D N G+RA+LDYK+ Sbjct: 697 PAYLEWIAERESQGWHFVLGEEKFEKLLRWEDGEIVLHGRVDRMDENASGERAVLDYKST 756 Query: 825 SAASLRQKVKEDDDHQLAFYGLLAGGAIEHAHYVALELGPDKKTGDAAAPDFARRQKMLQ 884 + +LR K+++ +DHQL FYGLL+G A+ A YV LE D K + APD+ Q+ L+ Sbjct: 757 NQGALRDKLRQGEDHQLPFYGLLSGTALSAALYVPLEATRD-KIKEVEAPDYEVWQQNLE 815 Query: 885 QQITTTMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 923 +QI MQA+ HGA LPA G E VCQYC++RGLCRKGAW Sbjct: 816 EQIVRNMQAITHGAPLPATGPEPVCQYCDVRGLCRKGAW 854 >ref|ZP_08275523.1| hypothetical protein IMCC9480_455 [Oxalobacteraceae bacterium IMCC9480] gb|EGF31004.1| hypothetical protein IMCC9480_455 [Oxalobacteraceae bacterium IMCC9480] Length = 604 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 330/642 (51%), Positives = 404/642 (62%), Gaps = 44/642 (6%) Query: 1 MLSATVPIPPSPEFWQQAVRQLLHPGQPLGQALQAQAGAALDFSGVQLMVPAFSHAQNFK 60 ML + I PS +FW A +LL + + AG DFS +++VP F A+ K Sbjct: 1 MLLSPCLIAPSAQFWTDAADRLLAFLRD-----RPAAGGVADFSSSRVLVPTFEQARRLK 55 Query: 61 TALSRELRRPYIAPRINTLSGLLAMQPPGEDAPPSESERLMQLYAQLREHGWLKKMFSAR 120 AL+ + ++ P I TLS LA+Q P ++ +SERLM LYA+LR+H WLKK+FSAR Sbjct: 56 LALATAVGSAFVPPVITTLSSWLALQVPADNVA-GDSERLMALYAELRQHAWLKKLFSAR 114 Query: 121 RNADLLPLAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLAPLAPSAHAMLS 180 RN DLLPLA TLL LSDEL+L LLP +R E RW AL QL +P+A +LS Sbjct: 115 RNTDLLPLAQTLLALSDELTLGLLPAMRVFPQESE--QRWQAALDQL----SPAARELLS 168 Query: 181 EEAALVWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQH 240 +E+ LVW IW+ QLD RD R + +L LAAR + L+W+SP E +P + AFL+AYA+ Sbjct: 169 DESQLVWTIWRTQLDQRDANASRLEHLLQLAARGAQSLVWISPVEADPFEQAFLSAYAER 228 Query: 241 QPVRIVTLDWSRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAA--APSA 298 V + LDW AA+AP+ + AW ELV D SAA AP+A Sbjct: 229 HDVLPICLDWRAAALAPVCVM---AWPELV-------------------DGSAAVDAPAA 266 Query: 299 LP--LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVAD 356 L L PA LE+ AV+ AQ VL W+ G IAI+AQDRV ARRLRALLERA+V VAD Sbjct: 267 LERIALFPACSLEDEAVRGAQTVLDWIAAGHARIAIIAQDRVIARRLRALLERAEVFVAD 326 Query: 357 ETGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRR 416 ETGWKLSTTRAA+ALAA D+V++R ET ALLDLLKSPF+ A VM IE LRR Sbjct: 327 ETGWKLSTTRAASALAALFDVVTSRAETGALLDLLKSPFITVAPAS----VMTIELALRR 382 Query: 417 ANIAGDWQALQTAFADASDPDDLQCILTLARQAARFGGRKTLSQWCETQRRLCEALGMDA 476 AN+ G W+A A + Q +L L QA RF ++L W T R + +ALGM Sbjct: 383 ANVTGGWEAAALALKALPA--EHQLLLRLREQAGRFQRNRSLGDWLVTTREVLDALGMQT 440 Query: 477 ALREDGAGQQCLLMLDEIAAEQGALQDQFSFAEWRALLNLRLDATSYMPPIKDRRVVMLP 536 AL D AG+Q + +LD IA E G L FSFAEWRA + L+ ++ +Y D+RVVMLP Sbjct: 441 ALSTDSAGEQLMALLDRIALECGGLGQPFSFAEWRAFVGLQCESAAYEVSESDQRVVMLP 500 Query: 537 LNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNLATRATRQRQQLRDLVELL 596 LNGARLR FDAVLV+G DAAHLPS P ETLFF+NAVRREL LATR RQRQQLRDL ELL Sbjct: 501 LNGARLRSFDAVLVVGIDAAHLPSQPPETLFFANAVRRELGLATREIRQRQQLRDLTELL 560 Query: 597 CINPEVVLCWQTHQDGEPNPVSPWIERLELKLAQQGAAPLQR 638 +VL WQ DGEPN VSPWIERL+L L + G L R Sbjct: 561 SSGSTIVLSWQATVDGEPNTVSPWIERLQLTLLRAGLPVLAR 602 >ref|ZP_07677074.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] gb|EFP64555.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA] Length = 947 Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust. Identities = 358/889 (40%), Positives = 481/889 (54%), Gaps = 49/889 (5%) Query: 70 PYIAPRINTLSGLLAMQPPGEDAPPSES--ERLMQLYAQLREHGWLKKMFSARRNADLLP 127 P + PRI TL L PP +P + RL+ + L+ WL++ A+ +A L Sbjct: 61 PRLLPRILTLGHWLLDLPPEAGSPAGRTPLSRLLAVQQALKTQAWLREALGAQDDAALWG 120 Query: 128 LAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLA-PLAPSAHAMLSEEAALV 186 +A L+ +SDELS L A +G + A ALA+ L A + L E+ +V Sbjct: 121 VAQVLVTVSDELSQRWLTLDAAHSGADGRADELESALAEALERTYAQLSERFLGTESRIV 180 Query: 187 WQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQHQPVRIV 246 W++ A D I R AM L P++W+SPT+PE +D FL A+ PV + Sbjct: 181 LTFWRLLSGAADPIPMRLRAMQRLLDELRGPIVWMSPTDPEAVDLDFLQRAAERVPVLSI 240 Query: 247 TLDW----SRAAMAP-----LYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAPS 297 DW S A+ AP L L AW P A +A A+A P+ Sbjct: 241 GYDWNAPESGASAAPSTHADFRNLLLHAW-----------PECATPAQAADDAAAAQLPA 289 Query: 298 ALPLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADE 357 + + A+ E+ A +A ++ WL G+ +A+VAQDR+ ARR+RALL R V V DE Sbjct: 290 PILRIAGAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDE 349 Query: 358 TGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVF-PADPGRAD--RVMRIEARL 414 TGWKLSTTRAAAAL W D+V G+T ALLDL+KSPF AD G A V +E R+ Sbjct: 350 TGWKLSTTRAAAALMRWVDVVQGDGDTAALLDLIKSPFCLRDADAGTATPAWVAELERRV 409 Query: 415 RRANIAGDWQALQTAFAD--ASDPDDLQCILTLARQAA---------RFGGRKTLSQWCE 463 RR N++G W L+ D ASD + + LA + R G TL W Sbjct: 410 RRHNVSGGWGRLRRLVTDRPASDAEGEAKVSRLADRLGVLADEAALWRRAGSATLDAWVT 469 Query: 464 TQRRLCEALGMDAALREDGAGQQCLLMLDEIAAEQGALQD---QFSFAEWRALLNLRLDA 520 + L M L+ D AG+Q L +D + D +FS EWRALL++ L++ Sbjct: 470 LLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRTSIHGSTDAGARFSLTEWRALLSMLLES 529 Query: 521 TSYMPPI--KDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNL 578 + P DRRVV+LPLNGAR+RRFD V+V+G D A LPS E LFFSN VRREL L Sbjct: 530 AVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGL 589 Query: 579 ATRATRQRQQLRDLVELLCINPEVVLCWQTHQD-GEPNPVSPWIERLELKLAQQGAAPLQ 637 RA R QQ RDL E+L PEVVL WQ H GEP+ +S W+ERL+ +LA G Sbjct: 590 PDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRLAVSGVRIDT 649 Query: 638 RLELPPPVQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDEL 697 + LP Q + P+ MPAP+AP L+P TLSA+ + S CPYQFF RMLR+ ++E+ Sbjct: 650 SVTLPS--LQTTSQPTDMPAPAAPTLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEV 707 Query: 698 SDMPEKRDYGSWLHEILYKYHAHLRDNDTPLPA-RAALLAQFSEEVFQREMQRHPAALAF 756 SD EKRD G LH IL+++H L + PA R +LL ++E F + AL F Sbjct: 708 SDELEKRDIGEILHAILHRFHRQLLETPMHDPADRLSLLQTITDEQFGPLLAEDGNALRF 767 Query: 757 HARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDG-GIELYGRLDRVDRNEQGQ 815 + RW VMP+YL W REA+GW+F GE ++ D + L GR+DR+D +++ Sbjct: 768 YRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLPDERALRLRGRIDRIDVHDEHG 827 Query: 816 RALLDYKTRSAASLRQKVKED-DDHQLAFYGLLAGGAIEHAHYVALELGPDKKTGDAAAP 874 A+LDYKT+S +L ++ K +D QL FYG+L A + +V+L+ D A P Sbjct: 828 VAVLDYKTQSQMALVRRAKTPFEDCQLPFYGVLDARA-DSGGWVSLDGEARGDKRDVALP 886 Query: 875 DFARRQKMLQQQITTTMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 923 DF + L +Q+ M A+A GA LPA G ES C+YC RGLCRKG W Sbjct: 887 DFTQVVDWLIEQMQKDMTALAAGAPLPAFGDESACRYCAARGLCRKGYW 935 >ref|YP_002981089.1| hypothetical protein Rpic12D_1125 [Ralstonia pickettii 12D] gb|ACS62417.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 947 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 356/889 (40%), Positives = 481/889 (54%), Gaps = 49/889 (5%) Query: 70 PYIAPRINTLSGLLAMQPPGEDAPPSES--ERLMQLYAQLREHGWLKKMFSARRNADLLP 127 P + PRI TL L PP +P + RL+ + L+ WL++ A+ +A L Sbjct: 61 PRLLPRILTLGHWLLDLPPEAGSPAGRTPLSRLLAVQQALKTLAWLREALGAQDDAALWG 120 Query: 128 LAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLA-PLAPSAHAMLSEEAALV 186 +A L+ +SD+LS L A +G + A ALA+ L A + L E+ +V Sbjct: 121 VAQVLVTVSDDLSQRWLTLDAAHSGADGRADELESALAEALERTYAQLSERFLGTESRIV 180 Query: 187 WQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQHQPVRIV 246 W++ A D I R AM L P++W+SPT+PE +D FL A+ PV + Sbjct: 181 LTFWRLLSGAADPIPMRLRAMQRLLDELRGPIVWMSPTDPEAVDLDFLQRAAERVPVLSI 240 Query: 247 TLDW----SRAAMAP-----LYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAPS 297 DW S A+ AP L L AW P A +A A+A P+ Sbjct: 241 GYDWNAPESGASAAPSTHADFRNLLLHAW-----------PECATPAQAADDAAAAQLPA 289 Query: 298 ALPLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADE 357 + + A+ E+ A +A ++ WL G+ +A+VAQDR+ ARR+RALL R V V DE Sbjct: 290 PILRIAGAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDE 349 Query: 358 TGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVF-PADPGRAD--RVMRIEARL 414 TGWKLSTTRAAAAL W D+V G+T ALLDL+KSPF AD G A V +E R+ Sbjct: 350 TGWKLSTTRAAAALMRWVDVVQGDGDTAALLDLIKSPFCLRDADAGTATPAWVAELERRV 409 Query: 415 RRANIAGDWQALQTAFAD--ASDPDDLQCILTLARQAA---------RFGGRKTLSQWCE 463 RR N++G W L+ D ASD + + LA + R G L W Sbjct: 410 RRHNVSGGWGRLRRLVTDRPASDAEGEAKVSRLADRLGVLADEAALWRRAGSAKLDAWVA 469 Query: 464 TQRRLCEALGMDAALREDGAGQQCLLMLDEIAAEQGALQD---QFSFAEWRALLNLRLDA 520 + L M L+ D AG+Q L +D + D ++S EWRALL++ L++ Sbjct: 470 LLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRTSIHGSTDAGARYSLTEWRALLSMLLES 529 Query: 521 TSYMPPI--KDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRELNL 578 + P DRRVV+LPLNGAR+RRFD V+V+G D A LPS E LFFSN VRREL L Sbjct: 530 AVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGL 589 Query: 579 ATRATRQRQQLRDLVELLCINPEVVLCWQTHQD-GEPNPVSPWIERLELKLAQQGAAPLQ 637 RA R QQ RDL E+L PEVVL WQ H GEP+ +S W+ERL+ +LA G Sbjct: 590 PDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPHRLSGWLERLQRRLAVSGVRIDT 649 Query: 638 RLELPPPVQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVMDEL 697 + LP Q + P+ MPAP+AP L+P TLSA+ + S CPYQFF RMLR+ ++E+ Sbjct: 650 SVTLPS--LQTTSQPTDMPAPAAPTLVPSTLSAAAYNSLRRCPYQFFVGRMLRLGELEEV 707 Query: 698 SDMPEKRDYGSWLHEILYKYHAHLRDNDTPLPA-RAALLAQFSEEVFQREMQRHPAALAF 756 SD EKRD G LH IL+++H L + PA R +LL ++E F + AL F Sbjct: 708 SDELEKRDIGGILHAILHRFHRQLLETPMHDPADRLSLLQTITDEQFGPLLAEDGNALRF 767 Query: 757 HARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDG-GIELYGRLDRVDRNEQGQ 815 + RW VMP+YL W REA+GW+F GE ++ SD + L GR+DR+D +++ Sbjct: 768 YRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLSDERALRLRGRIDRIDVHDEHG 827 Query: 816 RALLDYKTRSAASLRQKVKED-DDHQLAFYGLLAGGAIEHAHYVALELGPDKKTGDAAAP 874 A+LDYKT+S +L ++ K +D QL FYG+L A + +V+L+ D A P Sbjct: 828 VAVLDYKTQSQMALVRRAKTPFEDCQLPFYGVLDARA-DSGGWVSLDGEARGDKRDVALP 886 Query: 875 DFARRQKMLQQQITTTMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 923 DF + L +Q+ M A+A GA LPA G ES C+YC RGLCRKG W Sbjct: 887 DFTQVVDWLIEQMQKDMTALAAGAPLPAFGDESACRYCAARGLCRKGYW 935 >emb|CBJ38438.1| putative helicase, C_term RecB family exonuclease [Ralstonia solanacearum CMR15] Length = 966 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 370/910 (40%), Positives = 482/910 (52%), Gaps = 89/910 (9%) Query: 74 PRINTLSGLLAMQPPGEDAPPSES--ERLMQLYAQLREHGWLKKMFSARRNADLLPLAHT 131 PRI TL L PP D P + S RL+ + L+ WL++ A+ A L +A Sbjct: 66 PRILTLGHWLLDLPPEADLPAARSTLSRLLAVQQALKTQAWLREALGAQDEAALWGVAQV 125 Query: 132 LLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLAPLAPSAHAMLSE-----EAALV 186 L+ +SDELS L A + GR AL L+ +A LSE E+ +V Sbjct: 126 LVTVSDELSQRWLT---LDAADSETDGR-HDALETALSTALERTYAQLSERFLGTESRIV 181 Query: 187 WQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQHQPVRIV 246 W++ A D I R AM L P++W+SPT+PE D FL A PV + Sbjct: 182 LTFWRLLSGASDPIPVRLRAMRRLLDALRGPVVWMSPTDPEGADLDFLTRAAGRVPVLRI 241 Query: 247 TLDW----------SRAAMAPLYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAP 296 DW + A L L AW E A E A PP A+ Sbjct: 242 GYDWQAREPVAEAAAPATHGAFRTLLLHAWPECGTVAPQAVEASTE-AERPPPGLRIAS- 299 Query: 297 SALPLLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVAD 356 A+ E+ A +A ++ WL G+ +A+VAQDR+ ARR+RALL R V V D Sbjct: 300 --------AARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRD 351 Query: 357 ETGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVF-----PADPGRADRVMRIE 411 ETGWKLSTTRAAAAL W D+V G+T ALLDLLKSPF P+ A V +E Sbjct: 352 ETGWKLSTTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDAEAPSSVAPA-WVAELE 410 Query: 412 ARLRRANIAGDWQALQ---------TAFADASDPDD-------LQCILTLARQAA--RFG 453 R+RR N++G W L+ T A+A+D D + + LA +AA R Sbjct: 411 RRVRRRNVSGGWGRLRRLVAPRGTDTEVAEAADTGDGPPAGRLAERLGLLADEAALWRRA 470 Query: 454 GRKTLSQWCETQRRLCEALGMDAALREDGAGQQCLLMLDEI------AAEQGALQDQFSF 507 G TL W + L M A L+ D AG+Q L LD + +A+ GA +FS Sbjct: 471 GHATLEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWLDRLRVSVHGSADAGA---RFSL 527 Query: 508 AEWRALLNLRLDATSYMPPI--KDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQET 565 EWRALL++ L++ + P DRRVV+LPLNGAR+RRFD V+V+G D A LPS E Sbjct: 528 QEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEW 587 Query: 566 LFFSNAVRRELNLATRATRQRQQLRDLVELLCINPEVVLCWQTHQD-GEPNPVSPWIERL 624 LFFSN VRREL L RA R QQ RDL E+L PEVVL WQ H GEPN +S W+ERL Sbjct: 588 LFFSNDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLERL 647 Query: 625 ELKLAQQGAAPLQRLELP---PPVQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPY 681 + +LA G R+++P P +Q R P+ MPAP+AP L+P TLSA+ + S CPY Sbjct: 648 QRRLAAAG----MRIDVPVVLPALQTARQ-PTDMPAPAAPVLVPSTLSAAAYNSLRRCPY 702 Query: 682 QFFAQRMLRVAVMDELSDMPEKRDYGSWLHEILYKYHAHLRDNDTPLPA-RAALLAQFSE 740 QFF RMLR+ ++E+SD EKRD G LH IL+++H L D P R ALL ++ Sbjct: 703 QFFVGRMLRLGELEEVSDELEKRDIGEVLHAILHRFHRQLLDTPMADPVDRFALLQTLTD 762 Query: 741 EVFQREMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDG-GI 799 E F + L F+ RWQ VMP+YL W REA+GW+F GE ++ + + Sbjct: 763 ERFAPLLAEDGHVLRFYRRWQGVMPSYLAWQAAREADGWRFEAGEVDAEASIALTGAPAL 822 Query: 800 ELYGRLDRVDRNEQGQRALLDYKTRSAASLRQKVKED-DDHQLAFYGLL-----AGGAIE 853 L GR+DR+D + + A+LDYKT+S +L +KVK +D QL FYGLL AGG Sbjct: 823 HLRGRIDRIDTHPEHGVAVLDYKTQSPIALARKVKAPFEDCQLPFYGLLDARAGAGG--- 879 Query: 854 HAHYVALELGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAALPANGIESVCQYCE 913 +V+L+ + PDF L +Q+ M A+A GA LPA G ES C+YC Sbjct: 880 ---WVSLDGEARGDKRETGLPDFTEVVGWLTEQMGKDMSALAAGAPLPAFGDESACRYCA 936 Query: 914 MRGLCRKGAW 923 RGLCRKG W Sbjct: 937 ARGLCRKGYW 946 >ref|NP_519310.1| hypothetical protein RSc1189 [Ralstonia solanacearum GMI1000] emb|CAD14891.1| probable homologous recombinational repair protein [Ralstonia solanacearum GMI1000] Length = 962 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 372/909 (40%), Positives = 488/909 (53%), Gaps = 87/909 (9%) Query: 74 PRINTLSGLLAMQPPGEDAPPSES--ERLMQLYAQLREHGWLKKMFSARRNADLLPLAHT 131 PRI TL L PP P + S RL+ + L+ WL++ A+ A L +A Sbjct: 66 PRILTLGHWLLDLPPEAGLPAARSTLSRLLAVQQALKTQAWLREALGAQDEAALWGVAQV 125 Query: 132 LLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQLLAPLAPSAHAMLSE-----EAALV 186 L+ +SDELS L A + GR AL L+ +A LSE E+ +V Sbjct: 126 LVTVSDELSQRWLT---LDAADSETDGR-HDALETALSAALERTYAQLSERFLGTESRIV 181 Query: 187 WQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQHQPVRIV 246 W++ A D I R AM L P++W+SPT+PE D FL A PV + Sbjct: 182 LTFWRLLSGASDPIPVRLRAMRRLLDALRGPVVWMSPTDPEGADLDFLTRAAGRVPVLRI 241 Query: 247 TLDWSRAAMAP--LYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAPSALP---- 300 DW P P A+ L+ A+ E AP A+A + P Sbjct: 242 GYDWQAREPVPEAAAPATHGAFRTLLLH------AWPECGTVAPQAVEASAEAERPPPGL 295 Query: 301 LLCPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGW 360 + A+ E+ A +A ++ WL G+ +A+VAQDR+ ARR+RALL R V V DETGW Sbjct: 296 RIASAARFEDEAAFAAHTLVDWLNAGRRSLALVAQDRIVARRVRALLARVNVPVRDETGW 355 Query: 361 KLSTTRAAAALAAWNDLVSARGETNALLDLLKSPFVF-----PADPGRADRVMRIEARLR 415 KLSTTRAAAAL W D+V G+T ALLDLLKSPF P+ A V +E R+R Sbjct: 356 KLSTTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDAEAPSSVAPA-WVAELERRVR 414 Query: 416 RANIAGDWQALQ---------TAFADASDPDD-------LQCILTLARQAA--RFGGRKT 457 R N++G W L+ T A+A+D D + + LA +AA R G T Sbjct: 415 RHNVSGGWGRLRRLVALRGTDTDVAEAADTGDGPPAGRLAERLGLLADEAAQWRRAGHAT 474 Query: 458 LSQWCETQRRLCEALGMDAALREDGAGQQCLLMLDEI------AAEQGALQDQFSFAEWR 511 L W + L M A L+ D AG+Q L LD + +A+ GA +FS EWR Sbjct: 475 LEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWLDRLRVSVHGSADAGA---RFSLQEWR 531 Query: 512 ALLNLRLDATSYMPPI--KDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFS 569 ALL++ L++ + P DRRVV+LPLNGAR+RRFD V+V+G D A LPS E LFFS Sbjct: 532 ALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLPSAQPEWLFFS 591 Query: 570 NAVRRELNLATRATRQRQQLRDLVELLCINPEVVLCWQTHQD-GEPNPVSPWIERLELKL 628 N VRREL L RA R QQ RDL E+L PEVVL WQ H GEPN +S W+ERL+ +L Sbjct: 592 NDVRRELGLPDRAQRFAQQARDLAEVLLNQPEVVLTWQRHGGRGEPNRLSGWLERLQRRL 651 Query: 629 AQQGAAPLQRLELP---PPVQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFA 685 A G R+++P P +Q R P+ MPAP+AP L+P TLSA+ + S CPYQFF Sbjct: 652 AAAG----MRIDVPVVLPALQTARQ-PTDMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFV 706 Query: 686 QRMLRVAVMDELSDMPEKRDYGSWLHEILYKYHAHLRDNDTPLPA-RAALLAQFSEEVFQ 744 RMLR+ ++E+SD EKRD G LH IL+++H L D PA R ALL ++E F Sbjct: 707 GRMLRLGELEEVSDELEKRDIGEVLHAILHRFHRQLLDTPMADPADRLALLQALTDERFA 766 Query: 745 REMQRHPAALAFHARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDG-GIELYG 803 + AL F+ RWQ VM +YL W REA+GW+F GE ++ + L G Sbjct: 767 PLLAEDGHALRFYRRWQGVMASYLAWQAAREADGWRFEAGEVDADASIALPGAQALRLRG 826 Query: 804 RLDRVDRNEQGQRALLDYKTRSAASLRQKVKED-DDHQLAFYGLL-----AGGAIEHAHY 857 R+DR+D + + A+LDYKT+S +L +KVK +D QL FYGLL AGG + Sbjct: 827 RIDRIDTHPEHGVAVLDYKTQSPIALARKVKAPFEDCQLPFYGLLDARAGAGG------W 880 Query: 858 VALE---LGPDKKTGDAAAPDFARRQKMLQQQITTTMQAVAHGAALPANGIESVCQYCEM 914 V+L+ G ++TG PDF L +Q+ M A+A GA LPA G ES C+YC Sbjct: 881 VSLDGEARGDKRETG---LPDFTEVVGWLTEQMGKDMSALAAGAPLPAFGDESACRYCAA 937 Query: 915 RGLCRKGAW 923 RGLCRKG W Sbjct: 938 RGLCRKGYW 946 >ref|YP_296323.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha JMP134] gb|AAZ61479.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha JMP134] Length = 957 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 357/899 (39%), Positives = 478/899 (53%), Gaps = 55/899 (6%) Query: 69 RPYIAPRINTLSGLLAMQPPGEDAPP-SESERLMQLYAQLREHGWLKKMFSARRNADLLP 127 +P + PR+ TL L PP E AP S + RL+ + +R WL++ F A+ + Sbjct: 60 QPRLLPRVLTLGHWLLDLPP-EGAPVRSHAARLLAVQQAVRAQDWLRRSFGAQTESAAWG 118 Query: 128 LAHTLLDLSDELSLALLPEIRASAGEEAIAGRWTQALAQ--LLAPLAPSAHAMLSEEAAL 185 LA TLL + DEL+ L ++ S GE A+ G AL Q L A + ML EE+ + Sbjct: 119 LAQTLLSICDELNTRWLEDVAVSDGE-AMDGTDRAALLQGALERTYAHLSERMLGEESRI 177 Query: 186 VWQIWKIQLDARDRIVQRFDAMLDLAARASLPLIWVSPTEPEPLDAAFLAAYAQHQPVRI 245 V W+ D + R A+ LA + S P++W++PT P P++ AFL + PV Sbjct: 178 VLAFWQALSGPDDPLPSRRRALRRLAQQLSGPVVWIAPTPPTPIEGAFLRDADELVPVLE 237 Query: 246 VTLDWSRAAMA---PLYPLYLSAWGELVREEEGPAPAYEEFAASAPPDASAAAPSALPLL 302 + DWS AA A Y +S W E + APA+ A P P A+ ++ Sbjct: 238 IGYDWSGAAEAQEPGWYDTLISLWPEARISDAADAPAF----TPALPTLPEGRP-AIRVI 292 Query: 303 CPASDLENAAVQSAQIVLRWLQQGKNEIAIVAQDRVTARRLRALLERAQVSVADETGWKL 362 A + AA + Q+V +WL G+ IA+VA DRV ARR+RALL RA V DETGWKL Sbjct: 293 GTARFEDEAAAAADQLV-QWLNAGRRNIALVAHDRVVARRVRALLARAGAPVRDETGWKL 351 Query: 363 STTRAAAALAAWNDLVSARGETNALLDLLKSPFVFPADPGRADRVMRIEARLRRANIAGD 422 STTRAAAAL W DL+ G+T ALLDLLKSPF P P R + IE ++RR N++G Sbjct: 352 STTRAAAALMRWFDLLVRDGDTAALLDLLKSPFCLPDFPDRGAAIALIERQVRRDNVSGG 411 Query: 423 WQAL-------------------QTAFADASDPDDLQCILTLARQAARFG---GRKTLSQ 460 W L + A+A + + LA +AAR+ + LS Sbjct: 412 WDRLRHLPRALPAALADADADDTEIKRAEAVRRSAGELLTILADEAARWPRGLAQHPLSM 471 Query: 461 WCETQRRLCEALGMDAALREDGAGQQ---CLLMLDEIAAEQGALQDQFSFAEWRALLNLR 517 W +ALGM AAL D AG+Q L L ++ +++ + S AE+RA+L+ Sbjct: 472 WLGCLDGTLDALGMRAALAADEAGRQLLDALARLQDLPSDETSSHATLSQAEFRAMLSAL 531 Query: 518 LDATSYMPP--IKDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNAVRRE 575 L++ +Y P R+ +LPLNGAR+RRFD V+V+G D A LPS E +FFSN +RRE Sbjct: 532 LESVAYKEPSAASAARITILPLNGARMRRFDGVVVVGCDDAQLPSSAAELMFFSNQMRRE 591 Query: 576 LNLATRATRQRQQLRDLVELLCINPEVVLCWQT-HQDGEPNPVSPWIERLELKLAQQGAA 634 L L R +R QQ RDL E+L N +VVL WQ GEP VS WIERL A+ G A Sbjct: 592 LQLEDRESRFAQQARDLAEVLLNNDDVVLTWQRLGGRGEPKHVSGWIERLSACCARAGVA 651 Query: 635 PLQRLELPPPVQQLRALPSSMPAPSAPDLLPPTLSASGFGSFLACPYQFFAQRMLRVAVM 694 + P V Q A MPAP+AP L+P SA + CPYQFFA RML +A + Sbjct: 652 --IEASMAPLVHQTFAETQGMPAPAAPQLVPARWSAQAYNMLRRCPYQFFAGRMLGLAGL 709 Query: 695 DELSDMPEKRDYGSWLHEILYKYHAHL-----RDNDTPLPARAALLAQFSEEVFQREMQR 749 D +SD EKRD G LH +L +YH L R P R L + S++VF M Sbjct: 710 DAVSDDLEKRDIGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISDDVFGALMAE 769 Query: 750 HPAALAFHARWQKVMPAYLLWANEREAEGWQFAFGEESQSQTLQWSDGG-IELYGRLDRV 808 A+ ++ RW +V+P+Y+ W EREA+GW + GE L DG I L GR+DR+ Sbjct: 770 DGNAIGYYRRWCEVLPSYVTWQTEREAQGWFWRGGEIDAGVDLPMPDGKPIRLNGRIDRL 829 Query: 809 DRNEQGQRALLDYKTRSAASLRQKVKE-DDDHQLAFYGLLAGGAIEHAHYVALELGPDKK 867 D+ G A+LDYKT+SAA L++K E ++D QL FYGLL A+ +VALE D Sbjct: 830 DQGPGGAHAVLDYKTQSAARLKRKTSEVEEDCQLPFYGLLRADAV-GGSWVALEGVRDGA 888 Query: 868 TG---DAAAPDFARRQKMLQQQITTTMQAVAHGAALPANGIESVCQYCEMRGLCRKGAW 923 + PDF L++Q+ + + GA LPA G S C YC RGLCRKG W Sbjct: 889 ASLQREVDLPDFDAAVAWLERQLRDDVMRLREGARLPAFGDASACMYCSARGLCRKGFW 947