BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0002.p (550 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBJ38730.1| conserved protein of unknown function [Ralstonia... 188 2e-45 ref|YP_002797719.1| hypothetical protein Avin_04900 [Azotobacter... 181 4e-43 gb|EGH61452.1| hypothetical protein PMA4326_21869 [Pseudomonas s... 167 3e-39 ref|NP_598125.1| hypothetical protein pB4p28 [uncultured bacteri... 166 1e-38 ref|YP_003774404.1| hypothetical protein Hsero_0979 [Herbaspiril... 163 8e-38 ref|YP_003016934.1| hypothetical protein PC1_1351 [Pectobacteriu... 160 5e-37 ref|YP_003006263.1| hypothetical protein Dd1591_3984 [Dickeya ze... 159 9e-37 ref|YP_002989603.1| hypothetical protein Dd703_4029 [Dickeya dad... 159 2e-36 gb|EGH52447.1| hypothetical protein PSYCIT7_12614 [Pseudomonas s... 156 1e-35 gb|EGH44049.1| hypothetical protein PSYPI_17300 [Pseudomonas syr... 155 1e-35 >emb|CBJ38730.1| conserved protein of unknown function [Ralstonia solanacearum CMR15] Length = 257 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/181 (53%), Positives = 124/181 (68%), Gaps = 2/181 (1%) Query: 33 APAETVATISTLAQQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKERNDA 92 A +++ +STLAQQ+S+AA RA TRDA L+R +L A + ++ G Y NK +NDA Sbjct: 35 ADSKSAIAVSTLAQQLSEAAARAQTRDASLSRKDLGQKATALLSQITGDNYFANKAKNDA 94 Query: 93 ETPKTDDPVLLARAKQATESIYGKASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAWLEA 152 E P T DP LLARA+QAT S+ G+ SNPF GLSRDQL +IAYD+ G FTVNER AAW EA Sbjct: 95 EVPGTSDPALLARARQATASVNGQGSNPFKGLSRDQLDLIAYDDSGTFTVNERRAAWSEA 154 Query: 153 SRQEYEWRKQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESELQVL 212 QE WR+Q++++ + Y TG N A +L HY+GLPAIEQ+ YP SY S+LQ Sbjct: 155 YDQEEAWRRQVIAQGELEYQVTGKQNDFFAA--VLKHYQGLPAIEQAQYPSSYASQLQEW 212 Query: 213 I 213 I Sbjct: 213 I 213 >ref|YP_002797719.1| hypothetical protein Avin_04900 [Azotobacter vinelandii DJ] gb|ACO76744.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 253 Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 88/168 (52%), Positives = 122/168 (72%), Gaps = 2/168 (1%) Query: 46 QQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKERNDAETPKTDDPVLLAR 105 +Q+S+AA A RD L+ EL A T+ D+++G +Y +N+E +DAE P TDDP LLAR Sbjct: 53 RQLSEAAAGAEVRDMSLSYKELGQKAATLLDQIIGDSYHYNQELHDAEVPNTDDPKLLAR 112 Query: 106 AKQATESIYGKASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAWLEASRQEYEWRKQIMS 165 A+QAT+ + GK SNPF G+SRDQLA+IAYD+ G FTVNER AA+LEA+ QE WR+++++ Sbjct: 113 AEQATDFVNGKGSNPFKGMSRDQLALIAYDDSGTFTVNERRAAYLEAADQEQVWRRKVVA 172 Query: 166 RSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESELQVLI 213 ++ D Y+RTG + E+L+HYK LPAIEQ+ YP Y + LQ +I Sbjct: 173 QATDEYNRTGKLTNFFI--EVLEHYKELPAIEQAQYPSDYAARLQGMI 218 >gb|EGH61452.1| hypothetical protein PMA4326_21869 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 256 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/180 (47%), Positives = 122/180 (67%), Gaps = 4/180 (2%) Query: 36 ETVAT--ISTLAQQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKERNDAE 93 ET+A+ +S+L+ Q+S++ATRA +RDA L+ EL+ A+ + ++LVG +Y NK R+DAE Sbjct: 39 ETLASGKLSSLSVQLSESATRAASRDASLSHKELSEKASHLTEQLVGSSYDINKARHDAE 98 Query: 94 TPKTDDPVLLARAKQATESIYGKASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAWLEAS 153 P+++DP L RA+ AT I+G NPF G+ +DQLA+IAYDE FTVNE+ +AWLE+ Sbjct: 99 VPQSNDPDRLERARNATGFIHGSEKNPFSGMPQDQLALIAYDESDHFTVNEKKSAWLESY 158 Query: 154 RQEYEWRKQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESELQVLI 213 RQE WR+ ++++ Y TG +LDHYKGL IEQS YP SY ++LQ I Sbjct: 159 RQERVWRQHVVAQGSAEYSATG--KLTDFYTSVLDHYKGLSTIEQSQYPSSYATKLQDWI 216 >ref|NP_598125.1| hypothetical protein pB4p28 [uncultured bacterium] emb|CAD24350.1| hypothetical protein [uncultured bacterium] Length = 274 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 120/181 (66%), Gaps = 8/181 (4%) Query: 40 TISTLAQQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKERNDAETPKTDD 99 TISTLA Q++D+A+RA RD L+R+EL AN++ D+++G AYQ NK + + E PKTDD Sbjct: 47 TISTLASQLADSASRAEARDKMLSRSELADKANSLLDQILGDAYQANKAKYNNEVPKTDD 106 Query: 100 PVLLARAKQATESIYG------KASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAWLEAS 153 P LLARAKQATE + NPF LSR+QL+ I YD+ G +T+NER AA+ E+ Sbjct: 107 PELLARAKQATEFVTSSDRGSRSVKNPFGSLSREQLSNIIYDDSGNYTINERRAAYYESD 166 Query: 154 RQEYEWRKQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESELQVLI 213 +E WR ++ +++ D Y+RTG +LDH+K LP IEQ+ YP+ Y S+L+ I Sbjct: 167 DREQAWRVKVAAQAMDEYNRTGKMT--NFFSSVLDHFKELPTIEQAQYPKDYASDLESKI 224 Query: 214 A 214 + Sbjct: 225 S 225 >ref|YP_003774404.1| hypothetical protein Hsero_0979 [Herbaspirillum seropedicae SmR1] gb|ADJ62496.1| hypothetical protein Hsero_0979 [Herbaspirillum seropedicae SmR1] Length = 613 Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 144/445 (32%), Positives = 215/445 (48%), Gaps = 48/445 (10%) Query: 62 LTRNELTSL-ANTIADKLVGQAYQWNKERNDAETPKTDDPVLLARAKQATESIYGKASNP 120 +TR L +L A +A + +A Q DAE P + +P LARA+QATES+YG+A+NP Sbjct: 96 VTRKLLFALEAQLVAARGSAEAIQLA----DAELPPSQEPQRLARARQATESLYGRAANP 151 Query: 121 FLGLSRDQLAIIAYDEGGPFTVNERSAAWLEASRQEYEWRKQIMSRSQDAYHRTGNSNAE 180 F GL R +L+ I YD+ G +T+NER AA + + + + + R+ + + N + Sbjct: 152 FAGLGRAELSAIVYDDSGAYTINERYAAANQRTELDQRFWAPVFQRALE------SGNWQ 205 Query: 181 GVAQEMLDHYKGLPAIEQSLYPRSYESELQVLIATSGQDQRSSIKLESMNLLTLLNKWAK 240 V L Y L A+E++ YP +Y LQ + L + +L + Sbjct: 206 PVITAALVFYVSLSALERTAYPDNYPQLLQ-----------QYLDLYRLQPQAVLPAPQQ 254 Query: 241 ARAEHGLPTLDGSGDDSAKSKIAAAAISG-----TGPDSGRIDEVAP-IAPQVEA-TPAD 293 A L TL G A +A AI G GP I AP +A V+ A Sbjct: 255 ADLARMLETLVLPGGPLA---LAGGAIQGLLLPRLGPSLAEILAAAPRLADLVQVNNLAH 311 Query: 294 KTNVDSYSIMLKRVFGASDQKHEPAVTTKATLGSN-----------PRDFLTAEDRKFLA 342 SY ++L+RVFG ++ EPA + ++ N RDFL+ DR++LA Sbjct: 312 SVQDSSYLLLLQRVFGVQRREDEPAPARRTSVPGNGSGVGNMAALAARDFLSYGDRRYLA 371 Query: 343 RTYEFAAQTGSAPEDVDGLAFDLAHFRFMQATGNNIENKPGMIWNTDGSPLYYRMTEDDT 402 Y +A Q G APE+VD LA DLA +R +A + + RM+ +D Sbjct: 372 AAYAYAQQQGIAPEEVDALAQDLARYRQERAGAGASADAADAARALAHT---TRMSSEDR 428 Query: 403 TVATRILKSQSAATTSIDHGFIAYITNPRGIGWTNESNRGHATSLSFLEKLINAGAAEPL 462 +A R+L SQ+A T +DH F+A++ +P G GW + GH+ SL LE+L+ A L Sbjct: 429 LIAQRLLSSQAARQTQLDHAFLAWLLDPAGGGWRDGLASGHSVSLGVLERLLAGLAGVSL 488 Query: 463 AEVAPDSIELN--YKNSLSSIERQD 485 + A + EL Y+ L I Q+ Sbjct: 489 GQSAGPAAELEPAYRLVLERIALQE 513 >ref|YP_003016934.1| hypothetical protein PC1_1351 [Pectobacterium carotovorum subsp. carotovorum PC1] gb|ACT12398.1| conserved hypothetical protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 268 Score = 160 bits (405), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 99/223 (44%), Positives = 130/223 (58%), Gaps = 15/223 (6%) Query: 41 ISTLAQQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKERNDAETPKTDDP 100 I+TLA+Q+SDAA RA RDAK R+ L + A + D+LVG +Y K+ +DAE P +DDP Sbjct: 52 ITTLAKQLSDAAVRAEARDAKSDRSTLATRARNVDDELVGMSYVSGKKAHDAEVPNSDDP 111 Query: 101 VLLARAKQATESIYGKASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAWLEASRQEYEWR 160 LARAKQAT G+ SNPF GLSR+QLA+I YD+ G FTVNER AAW EA QE WR Sbjct: 112 ERLARAKQATAYTNGQGSNPFKGLSREQLALITYDDSGTFTVNERRAAWSEAYDQEQVWR 171 Query: 161 KQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESELQVLI------- 213 M++S+ ++R G + +L+H++ LP IEQ+ P Y + L+ LI Sbjct: 172 TMAMAQSKLEWNR-GEFKQTEFFKMVLEHHESLPLIEQAQAPEGYVARLKYLIEMDFNFM 230 Query: 214 -ATSGQDQRSSIKLESMNLLTLLNKWAKARAEHGLPTLDGSGD 255 SG+D + N L L K E G TLD + D Sbjct: 231 TGESGKD------ADPFNRLFELLSPTKLHLEDGKLTLDTTKD 267 >ref|YP_003006263.1| hypothetical protein Dd1591_3984 [Dickeya zeae Ech1591] gb|ACT08784.1| conserved hypothetical protein [Dickeya zeae Ech1591] Length = 253 Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 136/232 (58%), Gaps = 13/232 (5%) Query: 22 TRKGAYAPVV-SAPAETVAT-------ISTLAQQISDAATRAVTRDAKLTRNELTSLANT 73 TR A P S P +T + +S +A+ +S+A+TRA RDA R L ++A+ Sbjct: 20 TRSSATPPAAASTPTDTAQSTPNGGVQLSGMARLLSEASTRAAARDAGTDRRGLAAIADA 79 Query: 74 IADKLVGQAYQWNKERNDAETPKTDDPVLLARAKQATESIYGKASNPFLGLSRDQLAIIA 133 +KL+G Y NK DAE P + DP LA+A QAT+ + GK +NPF G+SRDQLA+I Sbjct: 80 AIEKLLGPGYNQNKAAYDAEVPDSTDPQRLAQATQATDFMNGKEANPFKGMSRDQLALIT 139 Query: 134 YDEGGPFTVNERSAAWLEASRQEYEWRKQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGL 193 YD+ G FTVNER AAW EA QE W++ ++++ + R G +A + +LDHY+ L Sbjct: 140 YDDSGAFTVNERRAAWREAYDQEETWKRAVIAKMNEEDERKGRVSA-STYRSILDHYQSL 198 Query: 194 PAIEQSLYPRSYESELQVLIATSGQDQRSSIKLES----MNLLTLLNKWAKA 241 PAIE++ P Y S+L +I G D + + E+ +N LT+ + AKA Sbjct: 199 PAIEEAQLPDGYASQLMTMIQQGGSDDALTRQQEALRPLLNALTMRAEQAKA 250 >ref|YP_002989603.1| hypothetical protein Dd703_4029 [Dickeya dadantii Ech703] gb|ACS87781.1| hypothetical protein Dd703_4029 [Dickeya dadantii Ech703] Length = 272 Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/173 (47%), Positives = 117/173 (67%), Gaps = 2/173 (1%) Query: 41 ISTLAQQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKERNDAETPKTDDP 100 +S A+ +SDAATRA TRDA L+R++L + A + D++ G Y NK R DA+ P TDD Sbjct: 42 LSAFARLLSDAATRAETRDASLSRSQLRATAESALDEITGTNYANNKARYDAQLPDTDDA 101 Query: 101 VLLARAKQATESIYGKASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAWLEASRQEYEWR 160 LLA A+Q+T+ + GKASNPF G+SR+QLA+I YD+ G FTVNER AA E++ Q EW Sbjct: 102 DLLALAQQSTDYLNGKASNPFKGMSREQLALITYDDSGAFTVNERRAALSESNDQYNEWA 161 Query: 161 KQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESELQVLI 213 ++++ ++ Y+RTG + + +ML+ Y+ PAIEQ+ YP Y +LQ I Sbjct: 162 RKVVDKAVAEYNRTGKITS--IYSDMLEFYQSQPAIEQAQYPDGYAVQLQAKI 212 >gb|EGH52447.1| hypothetical protein PSYCIT7_12614 [Pseudomonas syringae Cit 7] Length = 235 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/178 (47%), Positives = 109/178 (61%), Gaps = 2/178 (1%) Query: 32 SAPAETVATISTLAQQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKERND 91 SA A AT STL++Q+S +A RA RD+ L L LA I+DK+ G +Y N++ +D Sbjct: 37 SASAIDGATFSTLSRQLSSSAARAQARDSSLDFKSLGGLAKNISDKVAGNSYYANRKLHD 96 Query: 92 AETPKTDDPVLLARAKQATESIYGKASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAWLE 151 AE P TDDP LL RA QAT G NPF GLS+DQL +I YDEGG FT+NER+AA+ E Sbjct: 97 AEIPDTDDPALLERAVQATSFNNGAGKNPFAGLSQDQLRLIIYDEGGDFTINERNAAYSE 156 Query: 152 ASRQEYEWRKQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESEL 209 QE W++ I R D Y+ TG S V +L HY LP IE++ YP Y + + Sbjct: 157 NYSQEQVWKRAICQRYTDEYNETGKSTQTLVM--LLAHYDQLPPIEKAQYPAHYAANI 212 >gb|EGH44049.1| hypothetical protein PSYPI_17300 [Pseudomonas syringae pv. pisi str. 1704B] Length = 245 Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/180 (46%), Positives = 111/180 (61%), Gaps = 2/180 (1%) Query: 30 VVSAPAETVATISTLAQQISDAATRAVTRDAKLTRNELTSLANTIADKLVGQAYQWNKER 89 + S PA AT+S L+ Q+S++A RA RD L L SLA +I+DK+ G +Y N++ Sbjct: 45 LTSEPAIDSATLSKLSSQLSNSAARAQARDRGLDFKSLGSLAKSISDKIAGNSYYSNRKL 104 Query: 90 NDAETPKTDDPVLLARAKQATESIYGKASNPFLGLSRDQLAIIAYDEGGPFTVNERSAAW 149 +DAE P TDDP LL RA+QAT G +NPF GLS+DQL +I YDE FT+NERSAA+ Sbjct: 105 HDAEIPDTDDPALLERARQATSFKNGSGANPFAGLSQDQLRLIMYDEDSDFTINERSAAY 164 Query: 150 LEASRQEYEWRKQIMSRSQDAYHRTGNSNAEGVAQEMLDHYKGLPAIEQSLYPRSYESEL 209 E QE W++ I R D Y+ TG S V +L HY LP IE++ YP Y + + Sbjct: 165 SENYAQEQVWKRAICQRYTDEYNETGKSTQTLVM--LLAHYDQLPPIEKAQYPAHYAANI 222