BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0161.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776606.1| GGDEF domain-containing protein [Herbaspiril... 680 0.0 gb|EGH13870.1| GGDEF domain-containing protein [Pseudomonas syri... 136 5e-30 gb|EGH68017.1| GGDEF domain-containing protein [Pseudomonas syri... 134 2e-29 ref|ZP_06500196.1| GGDEF [Pseudomonas syringae pv. syringae FF5]... 134 2e-29 gb|ADR59972.1| GGDEF domain-containing protein [Pseudomonas puti... 133 4e-29 gb|EGH32645.1| GGDEF domain-containing protein [Pseudomonas syri... 133 5e-29 ref|NP_745590.1| GGDEF domain-containing protein [Pseudomonas pu... 132 6e-29 gb|EGH52987.1| GGDEF domain-containing protein [Pseudomonas syri... 132 1e-28 ref|ZP_07265147.1| GGDEF [Pseudomonas syringae pv. syringae 642] 131 2e-28 ref|NP_793570.1| GGDEF domain-containing protein [Pseudomonas sy... 130 2e-28 >ref|YP_003776606.1| GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64698.1| GGDEF domain protein [Herbaspirillum seropedicae SmR1] Length = 346 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/336 (99%), Positives = 335/336 (99%) Query: 1 MPLTQQRIDEFHGLIRPLSIGLQATGFILFLTGWALAAPNYVYPWWEGAALTAGGLFLLY 60 MPLTQQRIDEFHGLIRPLSIGLQATGFILFLTGWALAAP+YVYPWWEGAALTAGGLFLLY Sbjct: 11 MPLTQQRIDEFHGLIRPLSIGLQATGFILFLTGWALAAPSYVYPWWEGAALTAGGLFLLY 70 Query: 61 LVSRPGWLVPASFMMIWLLAEGFAMLAQPSPNRAFFTCALGITFALVSAPMFARTRYYMV 120 LVSRPGWLVPASFMMIWLLAEGFAMLAQPSPNRAFFTCALGITFALVSAPMFARTRYYMV Sbjct: 71 LVSRPGWLVPASFMMIWLLAEGFAMLAQPSPNRAFFTCALGITFALVSAPMFARTRYYMV 130 Query: 121 AVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGNFVNLTVKRQHVESLRLRKELEF 180 AVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGNFVNLTVKRQHVESLRLRKELEF Sbjct: 131 AVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGNFVNLTVKRQHVESLRLRKELEF 190 Query: 181 IAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDIDNFKKINDDFGHASGDEALIL 240 IAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDIDNFKKINDDFGHASGDEALIL Sbjct: 191 IAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDIDNFKKINDDFGHASGDEALIL 250 Query: 241 TARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVAAKLLQEVRQIHIHARPLTVSIG 300 TARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVAAKLLQEVRQIHIHARPLTVSIG Sbjct: 251 TARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVAAKLLQEVRQIHIHARPLTVSIG 310 Query: 301 IARAADHSSVSKVLSAADQALYQAKRAGKDRYVVSA 336 IARA DHSSVSKVLSAADQALYQAKRAGKDRYVVSA Sbjct: 311 IARATDHSSVSKVLSAADQALYQAKRAGKDRYVVSA 346 >gb|EGH13870.1| GGDEF domain-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 355 Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 119/236 (50%), Gaps = 4/236 (1%) Query: 96 FTCALGITFALVSAPMFARTRYYMVAVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLG 155 +T + I L S + TR Y+ ++IL ID + +M+L ++ + Sbjct: 96 WTLPIAIMIILCSTLLVVYTRDYLFVSVLSWIILSPAQGIDTDSAA-YVFMMLFFVSSIA 154 Query: 156 LGNFVNLTVKRQHVESLRLRKELEFIAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFL 215 LG +N T R + L L ++ D LT I NRR M L + S + FL Sbjct: 155 LGVVLNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALM--LALDEHVANNSGSYFL 212 Query: 216 MIDIDNFKKINDDFGHASGDEALILTARAMQSALSEGALGRMGGEEFGIALSGGGLAHAE 275 M+DIDNFK IND FGH +GDE L L A +Q A GRMGGEEFG+ L G A Sbjct: 213 MLDIDNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAFGRMGGEEFGVILPVSGEPVAC 272 Query: 276 QVAAKLLQEVRQIHIHARPLTVSIGIARAADHSSVSKVLSAADQALYQAKRAGKDR 331 +LL +R+ PLT S G+A +S+ S+VL AD +YQAKR GKDR Sbjct: 273 DYVLRLLDTIRR-SPTVSPLTCSAGLADIDANSTSSQVLKTADVNMYQAKREGKDR 327 >gb|EGH68017.1| GGDEF domain-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 355 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 100 LGITFALVSAPMFARTRYYMVAVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGNF 159 + I L S + TR Y+ ++IL ID + +M+L ++ + LG Sbjct: 100 IAIMIILCSTLLVVYTRDYLFVSVLSWIILSPAQGIDTDSAA-YVFMMLFFVSSIALGVV 158 Query: 160 VNLTVKRQHVESLRLRKELEFIAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDI 219 +N T R + L L ++ D LT I NRR M L + S + FLM+DI Sbjct: 159 LNHTNTRTLRKVLTLESRFRELSLTDDLTDILNRRALM--LALDEHVANNSGSYFLMLDI 216 Query: 220 DNFKKINDDFGHASGDEALILTARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVAA 279 DNFK IND FGH +GDE L L A +Q A GRMGGEEFG+ L G A Sbjct: 217 DNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAFGRMGGEEFGVILPVSGEPVACDYVL 276 Query: 280 KLLQEVRQIHIHARPLTVSIGIARAADHSSVSKVLSAADQALYQAKRAGKDR 331 +LL +R+ PLT S G+A +S+ S+VL AD +YQAKR GKDR Sbjct: 277 RLLDTIRR-SPTVSPLTCSAGLADIDANSTSSQVLKTADVNMYQAKREGKDR 327 >ref|ZP_06500196.1| GGDEF [Pseudomonas syringae pv. syringae FF5] gb|EGH75243.1| GGDEF domain-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 355 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 118/233 (50%), Gaps = 4/233 (1%) Query: 99 ALGITFALVSAPMFARTRYYMVAVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGN 158 ++ + L S + TR Y+V + IL +D + V +M L +T + LG+ Sbjct: 99 SVAVMIILCSTLLVVYTRDYLVVAILAWCILSPAQGVDTDSVA-AVFMTLFFITSVSLGS 157 Query: 159 FVNLTVKRQHVESLRLRKELEFIAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMID 218 +N T R L L + ++ D LT I NRR MQ L S FLM+D Sbjct: 158 VMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDN--HVLNNSAGYFLMLD 215 Query: 219 IDNFKKINDDFGHASGDEALILTARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVA 278 ID+FK IND FGH +GD+AL + A +Q + A GRMGGEEFG+ L A Sbjct: 216 IDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAFGRMGGEEFGVILPMCSEDDARDYV 275 Query: 279 AKLLQEVRQIHIHARPLTVSIGIARAADHSSVSKVLSAADQALYQAKRAGKDR 331 LL+ +R+ + PLT S G+A + S+VL AD LYQAKR GKDR Sbjct: 276 LNLLECIRK-SLAVSPLTCSAGLADIPAAADSSEVLKTADINLYQAKRGGKDR 327 >gb|ADR59972.1| GGDEF domain-containing protein [Pseudomonas putida BIRD-1] Length = 363 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 97/270 (35%), Positives = 138/270 (51%), Gaps = 30/270 (11%) Query: 64 RPGWLVPASFMMIWLLAEGFAMLAQPSPNRAFFTCALGITFALVSAPMFARTRYYMVAVC 123 RP WLV ++ +AM P +FF CA+ IT+ +++ F TR A+ Sbjct: 114 RPVWLVLGVSTVL------YAMSVLPVRRWSFF-CAMVITWVMLNP--FYHTRIEPDALE 164 Query: 124 GMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGNFVNLTVKRQHVESLRLRKELEFIAF 183 G LI + + L+ GL ++ L +++ + + L K L A+ Sbjct: 165 GAMLI---------------SYAVFLS----GLVSYSYLQIRKTKLHNFYLSKVLLEQAY 205 Query: 184 KDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDIDNFKKINDDFGHASGDEALILTAR 243 D LT I NRR FM Q L+ S MIDIDNFK++ND FGH GDE L A Sbjct: 206 VDALTDIPNRRSFMAQADRQLRMA-TSGQYLAMIDIDNFKRVNDRFGHDVGDEVLKRVAL 264 Query: 244 AMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVAAKLLQEVRQIHIHARPLTVSIGIAR 303 +++++++ A R+GGEEF I G AEQ A L Q VR+ P+T+SIG+A+ Sbjct: 265 HIKTSMADQAFARLGGEEFAIFFEGLDQQGAEQRVAALCQRVRE-DTGEHPVTISIGLAK 323 Query: 304 AADHSSVSKVLSAADQALYQAKRAGKDRYV 333 S++ L ADQALY+AK GKDR+V Sbjct: 324 INRGESLTTALVRADQALYEAKHTGKDRFV 353 >gb|EGH32645.1| GGDEF domain-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 355 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 117/233 (50%), Gaps = 4/233 (1%) Query: 99 ALGITFALVSAPMFARTRYYMVAVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGN 158 ++ + L S + TR Y+V + IL +D + V +M L +T + LG+ Sbjct: 99 SVAVMIILCSTLLVVYTRDYLVVAVLAWCILSPAQGVDTDSVA-AVFMTLFFITSVSLGS 157 Query: 159 FVNLTVKRQHVESLRLRKELEFIAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMID 218 +N T R L L + ++ D LT I NRR MQ L S FLM+D Sbjct: 158 VMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDN--HVLNNSAGYFLMLD 215 Query: 219 IDNFKKINDDFGHASGDEALILTARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVA 278 ID+FK IND FGH +GD+AL + A +Q + A GRMGGEEFG+ L Sbjct: 216 IDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAFGRMGGEEFGVILPMCSEDDVRDYV 275 Query: 279 AKLLQEVRQIHIHARPLTVSIGIARAADHSSVSKVLSAADQALYQAKRAGKDR 331 LL+ +R+ + PLT S G+A + S+VL AD LYQAKR GKDR Sbjct: 276 LNLLECIRK-SLAVSPLTCSAGLADIPAAADSSEVLKTADINLYQAKRGGKDR 327 >ref|NP_745590.1| GGDEF domain-containing protein [Pseudomonas putida KT2440] gb|AAN69054.1|AE016538_3 GGDEF domain protein [Pseudomonas putida KT2440] Length = 363 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 97/270 (35%), Positives = 138/270 (51%), Gaps = 30/270 (11%) Query: 64 RPGWLVPASFMMIWLLAEGFAMLAQPSPNRAFFTCALGITFALVSAPMFARTRYYMVAVC 123 RP WLV ++ +AM P +FF CA+ IT+ +++ F TR A+ Sbjct: 114 RPVWLVLGVSTVL------YAMSVLPVRRWSFF-CAMVITWVMLNP--FYHTRIEPDALE 164 Query: 124 GMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGNFVNLTVKRQHVESLRLRKELEFIAF 183 G LI + + L+ GL ++ L +++ + + L K L A+ Sbjct: 165 GAMLI---------------SYAVFLS----GLVSYSYLQIRKAKLHNFYLSKVLLEQAY 205 Query: 184 KDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDIDNFKKINDDFGHASGDEALILTAR 243 D LT I NRR FM Q L+ S MIDIDNFK++ND FGH GDE L A Sbjct: 206 VDALTDIPNRRSFMAQADRQLRMA-TSGQYLAMIDIDNFKRVNDRFGHDVGDEVLKRVAL 264 Query: 244 AMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVAAKLLQEVRQIHIHARPLTVSIGIAR 303 +++++++ A R+GGEEF I G AEQ A L Q VR+ P+T+SIG+A+ Sbjct: 265 HIKTSMADQAFARLGGEEFAIFFEGLDQQGAEQRVAALCQRVRE-DAGEHPVTISIGLAK 323 Query: 304 AADHSSVSKVLSAADQALYQAKRAGKDRYV 333 S++ L ADQALY+AK GKDR+V Sbjct: 324 VDRGESLTTALVRADQALYEAKHTGKDRFV 353 >gb|EGH52987.1| GGDEF domain-containing protein [Pseudomonas syringae Cit 7] Length = 355 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 117/233 (50%), Gaps = 4/233 (1%) Query: 99 ALGITFALVSAPMFARTRYYMVAVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGN 158 ++ + L S + TR Y++ + IL +D + V +M L +T + LG+ Sbjct: 99 SVAVMIILCSTLLVVYTRDYLLVAVLAWCILSPAQGLDTDSVA-TLFMTLFFITSVSLGS 157 Query: 159 FVNLTVKRQHVESLRLRKELEFIAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMID 218 +N T R L L + ++ D LT I NRR MQ L S FLM+D Sbjct: 158 VMNHTYTRTLRTVLSLEHQFRELSLTDDLTPILNRRALMQALDK--HVLNNSAGYFLMLD 215 Query: 219 IDNFKKINDDFGHASGDEALILTARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVA 278 ID+FK IND FGH +GD+AL + A +Q + A GRMGGEEFG+ L A + Sbjct: 216 IDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAFGRMGGEEFGVILPMCSEDEAREYV 275 Query: 279 AKLLQEVRQIHIHARPLTVSIGIARAADHSSVSKVLSAADQALYQAKRAGKDR 331 LL +R+ + PLT S G+A S+VL AD LYQAKR GKDR Sbjct: 276 LNLLDCIRK-SLAVSPLTCSAGLADIPAAVDSSEVLKTADINLYQAKRGGKDR 327 >ref|ZP_07265147.1| GGDEF [Pseudomonas syringae pv. syringae 642] Length = 355 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 115/233 (49%), Gaps = 4/233 (1%) Query: 99 ALGITFALVSAPMFARTRYYMVAVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGN 158 ++ + L S + TR Y++ + IL +D + V +M L +T + LG+ Sbjct: 99 SVAVMIILCSTLLVVYTRDYLLVAILAWCILSPAQGVDTDSVA-TMFMTLFFITSVSLGS 157 Query: 159 FVNLTVKRQHVESLRLRKELEFIAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMID 218 +N T R L L + ++ D LT I NRR MQ L S FLM+D Sbjct: 158 VMNHTYTRTLRTVLSLEHQFRELSLTDDLTAILNRRALMQALDN--HVLNNSAGYFLMLD 215 Query: 219 IDNFKKINDDFGHASGDEALILTARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVA 278 ID+FK IND FGH +GD+AL + A +Q + A GRMGGEEFG+ L A Sbjct: 216 IDDFKTINDQFGHDAGDQALRVMAGCLQKTVGSLAFGRMGGEEFGVILPMCSDDDARDYV 275 Query: 279 AKLLQEVRQIHIHARPLTVSIGIARAADHSSVSKVLSAADQALYQAKRAGKDR 331 LL +R+ PLT S G+A + S VL AD LYQAKR GKDR Sbjct: 276 LSLLDCIRK-SSAVSPLTCSAGLADITAAADSSAVLKTADINLYQAKRGGKDR 327 >ref|NP_793570.1| GGDEF domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO57265.1| GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 355 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 100 LGITFALVSAPMFARTRYYMVAVCGMYLILGRGSFIDAEVVGDERWMLLLTLTVLGLGNF 159 + + L S + TR Y+ ++IL ID + +M+L ++ + LG Sbjct: 100 IALMIILCSTLLVVYTRDYLFVSVLSWIILSPAQGIDTDSAA-YVFMMLFFVSSIALGVV 158 Query: 160 VNLTVKRQHVESLRLRKELEFIAFKDPLTGIDNRRRFMQQLPIILQAGQPSDACFLMIDI 219 +N T R + L L ++ D LT I NRR M L + Q S FLM+DI Sbjct: 159 LNHTYTRTLRKVLTLESRFRELSLTDDLTDILNRRALM--LALDEQLANNSGGYFLMLDI 216 Query: 220 DNFKKINDDFGHASGDEALILTARAMQSALSEGALGRMGGEEFGIALSGGGLAHAEQVAA 279 DNFK IND FGH +GDE L L A +Q A GRMGGEEFG+ L G A Sbjct: 217 DNFKTINDQFGHDAGDEVLRLMASCLQQTPGSLAFGRMGGEEFGVILPVSGEPVACDYVL 276 Query: 280 KLLQEVRQIHIHARPLTVSIGIARAADHSSVSKVLSAADQALYQAKRAGKDR 331 +LL +R+ LT S G+A +S+ S+VL AD +YQAKR GKDR Sbjct: 277 RLLDTIRR-SPAVSSLTCSAGLADIDANSTSSQVLKTADINMYQAKREGKDR 327