BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0149.p (475 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776593.1| cbb3-type cytochrome c oxidase subunit I tra... 957 0.0 ref|YP_001353321.1| cb-type cytochrome c oxidase subunit I [Jant... 808 0.0 ref|ZP_08276119.1| Cytochrome c oxidase subunit CcoN [Oxalobacte... 804 0.0 emb|CAL61802.2| Cytochrome c oxidase cbb3-type, subunit 1 [Hermi... 804 0.0 ref|YP_001099927.1| cbb3-type cytochrome c oxidase subunit I [He... 804 0.0 ref|YP_983999.1| cbb3-type cytochrome c oxidase subunit I [Polar... 786 0.0 ref|YP_004846282.1| cytochrome c oxidase, cbb3-type subunit I [P... 783 0.0 ref|ZP_03697589.1| cytochrome c oxidase, cbb3-type, subunit I [L... 782 0.0 ref|NP_900844.1| cbb3-type cytochrome c oxidase subunit I [Chrom... 781 0.0 ref|ZP_04761174.1| cytochrome c oxidase, cbb3-type, subunit I [A... 780 0.0 >ref|YP_003776593.1| cbb3-type cytochrome c oxidase subunit I transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64685.1| cbb3-type cytochrome c oxidase, subunit I transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/475 (99%), Positives = 475/475 (100%) Query: 1 VSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 +SKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN Sbjct: 1 MSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 Query: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE Sbjct: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 Query: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM Sbjct: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 Query: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV Sbjct: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR Sbjct: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 Query: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM Sbjct: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 Query: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT Sbjct: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 Query: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH Sbjct: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 >ref|YP_001353321.1| cb-type cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] gb|ABR88525.1| cb-type cytochrome c oxidase subunit I [Janthinobacterium sp. Marseille] Length = 474 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/470 (83%), Positives = 428/470 (91%), Gaps = 2/470 (0%) Query: 6 SYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTNAVIFA 65 +YNY VVRQF +AT++WGV+GMLVGV IAAQLAWP LN + WLS+GRLRPLHTN VIFA Sbjct: 6 NYNYKVVRQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTNGVIFA 65 Query: 66 FGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKEYAELE 125 FG C L ATSYYVVQRTCQVRL SD LAAFTFWGWQLV+V A I+LP+G TRGKEYAELE Sbjct: 66 FGICGLFATSYYVVQRTCQVRLSSDKLAAFTFWGWQLVLVLAVITLPMGWTRGKEYAELE 125 Query: 126 WPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTMPATLT 185 WP+ ILI +VWVAYAVVFFGTLIKRKVQHIYVANWF+GA+IIAVA+LHIVNG MPA+L Sbjct: 126 WPIAILITIVWVAYAVVFFGTLIKRKVQHIYVANWFFGAYIIAVALLHIVNGAVMPASLG 185 Query: 186 KSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFWAL 245 KSYS Y+G QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIVHFWAL Sbjct: 186 KSYSAYAGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFWAL 245 Query: 246 IFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLRTDPIL 305 IFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMINGMMTLSGAWH+LR+DPIL Sbjct: 246 IFTYMWAGPHHLHYTALPDWTQSIGMVFSLILLAPSWGGMINGMMTLSGAWHKLRSDPIL 305 Query: 306 KFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYLIP 365 KFL+VSLSFYG++TFEGPMM+IKTVNALSHYTDWTIGHVH+GALGWVGF+TMG++YYLIP Sbjct: 306 KFLIVSLSFYGIATFEGPMMSIKTVNALSHYTDWTIGHVHAGALGWVGFITMGSIYYLIP 365 Query: 366 RLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYTFVESV 425 RLSGK QMWS +LIE+HFWVATIGIVLYIA+MWIAGVMQGLMWRAVN DGTLTYTFVESV Sbjct: 366 RLSGKKQMWSTNLIELHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYTFVESV 425 Query: 426 KATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 KATYPYYVIR GG +YL GML+MAYNT+ TMR E A IPAV AAH Sbjct: 426 KATYPYYVIRFTGGALYLGGMLLMAYNTFMTMRDGEAVAARIPAV--AAH 473 >ref|ZP_08276119.1| Cytochrome c oxidase subunit CcoN [Oxalobacteraceae bacterium IMCC9480] gb|EGF30408.1| Cytochrome c oxidase subunit CcoN [Oxalobacteraceae bacterium IMCC9480] Length = 475 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/467 (81%), Positives = 428/467 (91%) Query: 4 ENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTNAVI 63 E +YNY VV+QFT+AT++WGV+GMLVGVIIAAQLAWP LN +PWL++GRLRPLHTNAVI Sbjct: 4 ELNYNYKVVKQFTIATVVWGVIGMLVGVIIAAQLAWPALNFDIPWLTYGRLRPLHTNAVI 63 Query: 64 FAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKEYAE 123 FAFG C L ATSYYVVQRTCQVRLFSD LAAFTFWGWQLV++ A ISLPLG TRGKEYAE Sbjct: 64 FAFGICGLFATSYYVVQRTCQVRLFSDGLAAFTFWGWQLVLICATISLPLGFTRGKEYAE 123 Query: 124 LEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTMPAT 183 LEWP+ +LI VVWVAYAVVFFGTL+KRKV+HIYVANWF+GAFI+AVAILHIVNG +MPA+ Sbjct: 124 LEWPIALLITVVWVAYAVVFFGTLVKRKVKHIYVANWFFGAFILAVAILHIVNGASMPAS 183 Query: 184 LTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFW 243 TKSYS YSG QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIVHFW Sbjct: 184 FTKSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFW 243 Query: 244 ALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLRTDP 303 ALIFTYMWAGPHHLHYTALPDWTQSL +VFSLILLAPSWGGMING+MTLSGAWH+LR+DP Sbjct: 244 ALIFTYMWAGPHHLHYTALPDWTQSLAVVFSLILLAPSWGGMINGIMTLSGAWHKLRSDP 303 Query: 304 ILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYL 363 ILKF++VSLSFYGMSTFEGPMM+IKT+N+LSHYTDWTI HVHSGALGWVGF+TMG++YYL Sbjct: 304 ILKFMIVSLSFYGMSTFEGPMMSIKTINSLSHYTDWTIAHVHSGALGWVGFITMGSIYYL 363 Query: 364 IPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYTFVE 423 IPRLSGK MWS L++ HFWVATIG+VLYI++MWIAGVMQGLMWRAVNADGTLTY+FVE Sbjct: 364 IPRLSGKNAMWSPRLVDTHFWVATIGVVLYISSMWIAGVMQGLMWRAVNADGTLTYSFVE 423 Query: 424 SVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAV 470 VKATYPYYVIR+ GGL+Y SGM++MA+NT+ TMR A IP++ Sbjct: 424 GVKATYPYYVIRVSGGLLYFSGMVMMAFNTFMTMRDGTAVEARIPSL 470 >emb|CAL61802.2| Cytochrome c oxidase cbb3-type, subunit 1 [Herminiimonas arsenicoxydans] Length = 483 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/475 (81%), Positives = 428/475 (90%), Gaps = 1/475 (0%) Query: 1 VSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 V +YNY +V+QF +AT++WGV+GMLVGV IAAQLAWP LN + WLS+GRLRPLHTN Sbjct: 9 VDTALNYNYKIVKQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTN 68 Query: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 VIFAFG C L ATSYYVVQRTCQVRLFSD LAAFTFWGWQLV+V A I+LP+G TR KE Sbjct: 69 GVIFAFGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVLAVITLPMGWTRAKE 128 Query: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 YAELEWP+TILI +VWVAYAVVFFGT++KRKV HIYVANWF+G +IIAVA+LHIVNG++M Sbjct: 129 YAELEWPITILITIVWVAYAVVFFGTIVKRKVAHIYVANWFFGGYIIAVALLHIVNGISM 188 Query: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 PA++ KSYS YSG QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIV Sbjct: 189 PASIGKSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIV 248 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMINGMMTLSGAWH+LR Sbjct: 249 HFWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGMMTLSGAWHKLR 308 Query: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 +DPILKFL+VSLSFYGM+TFEGPMM+IKTVNALSHYTDW I HVH+GALGWVGF+TMG++ Sbjct: 309 SDPILKFLIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHAGALGWVGFITMGSI 368 Query: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 YYLIPRLSGK +MWS LIE HFWVATIGIVLYIA+MWIAGVMQGLMWRAVN DGTLTYT Sbjct: 369 YYLIPRLSGKKEMWSTRLIETHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYT 428 Query: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 FVESVKATYPYYVIR GG++YLSGML+MAYNTW TMR +E A IP V AAH Sbjct: 429 FVESVKATYPYYVIRFTGGVLYLSGMLLMAYNTWMTMRDSEAVHARIPDVV-AAH 482 >ref|YP_001099927.1| cbb3-type cytochrome c oxidase subunit I [Herminiimonas arsenicoxydans] Length = 475 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/470 (82%), Positives = 427/470 (90%), Gaps = 1/470 (0%) Query: 6 SYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTNAVIFA 65 +YNY +V+QF +AT++WGV+GMLVGV IAAQLAWP LN + WLS+GRLRPLHTN VIFA Sbjct: 6 NYNYKIVKQFAIATVVWGVIGMLVGVFIAAQLAWPALNFDIAWLSYGRLRPLHTNGVIFA 65 Query: 66 FGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKEYAELE 125 FG C L ATSYYVVQRTCQVRLFSD LAAFTFWGWQLV+V A I+LP+G TR KEYAELE Sbjct: 66 FGICGLFATSYYVVQRTCQVRLFSDKLAAFTFWGWQLVLVLAVITLPMGWTRAKEYAELE 125 Query: 126 WPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTMPATLT 185 WP+TILI +VWVAYAVVFFGT++KRKV HIYVANWF+G +IIAVA+LHIVNG++MPA++ Sbjct: 126 WPITILITIVWVAYAVVFFGTIVKRKVAHIYVANWFFGGYIIAVALLHIVNGISMPASIG 185 Query: 186 KSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFWAL 245 KSYS YSG QDAMIQWWYGHNAVGF LTAG+LGM+YYFIPKQ RPVYSYRLSIVHFWAL Sbjct: 186 KSYSAYSGVQDAMIQWWYGHNAVGFILTAGYLGMVYYFIPKQAERPVYSYRLSIVHFWAL 245 Query: 246 IFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLRTDPIL 305 IFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMINGMMTLSGAWH+LR+DPIL Sbjct: 246 IFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGMMTLSGAWHKLRSDPIL 305 Query: 306 KFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYLIP 365 KFL+VSLSFYGM+TFEGPMM+IKTVNALSHYTDW I HVH+GALGWVGF+TMG++YYLIP Sbjct: 306 KFLIVSLSFYGMATFEGPMMSIKTVNALSHYTDWGIAHVHAGALGWVGFITMGSIYYLIP 365 Query: 366 RLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYTFVESV 425 RLSGK +MWS LIE HFWVATIGIVLYIA+MWIAGVMQGLMWRAVN DGTLTYTFVESV Sbjct: 366 RLSGKKEMWSTRLIETHFWVATIGIVLYIASMWIAGVMQGLMWRAVNPDGTLTYTFVESV 425 Query: 426 KATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 KATYPYYVIR GG++YLSGML+MAYNTW TMR +E A IP V AAH Sbjct: 426 KATYPYYVIRFTGGVLYLSGMLLMAYNTWMTMRDSEAVHARIPDVV-AAH 474 >ref|YP_983999.1| cbb3-type cytochrome c oxidase subunit I [Polaromonas naphthalenivorans CJ2] gb|ABM39078.1| cytochrome c oxidase, cbb3-type, subunit I [Polaromonas naphthalenivorans CJ2] Length = 478 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/468 (79%), Positives = 418/468 (89%) Query: 2 SKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTNA 61 ++ +YN TVVRQF + T++WGVVGMLVGVIIAAQLAWPELN+G+PWLS+GRLRPLHTNA Sbjct: 6 AQATTYNDTVVRQFAIMTVVWGVVGMLVGVIIAAQLAWPELNLGIPWLSYGRLRPLHTNA 65 Query: 62 VIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKEY 121 VIFAFG C LM TS YVVQRTCQVRLFSD LAAF FWGWQLVIV AAISLPLG T+GKEY Sbjct: 66 VIFAFGCCGLMGTSLYVVQRTCQVRLFSDKLAAFVFWGWQLVIVSAAISLPLGYTQGKEY 125 Query: 122 AELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTMP 181 AELEWP+ ILI +VWVAYA VFFGT+ RKV+HIYVANWFYGAFIIA+A+LH+VN ++P Sbjct: 126 AELEWPIDILITLVWVAYAFVFFGTVGTRKVRHIYVANWFYGAFIIAIAMLHLVNNASIP 185 Query: 182 ATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVH 241 KSYS Y+G QDAM+QWWYGHNAVGF LTAGFLGMMYYFIPKQ RPVYSYRLSIVH Sbjct: 186 VGFMKSYSAYAGVQDAMVQWWYGHNAVGFLLTAGFLGMMYYFIPKQAERPVYSYRLSIVH 245 Query: 242 FWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLRT 301 FWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMING+MTLSGAWH+LR Sbjct: 246 FWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGIMTLSGAWHKLRD 305 Query: 302 DPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMY 361 DPIL+FL+VSLSFYGMSTFEGPMMAIKTVNALSHYTDWT+GHVHSGALGWVG +T+G+MY Sbjct: 306 DPILRFLIVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVGLITIGSMY 365 Query: 362 YLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYTF 421 YLIPRL G+ QM+S +E+HFW ATIGIV+YIAAMWIAGVMQGLMWRAVN DGTLTYTF Sbjct: 366 YLIPRLFGQKQMYSMKAVEVHFWTATIGIVIYIAAMWIAGVMQGLMWRAVNTDGTLTYTF 425 Query: 422 VESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPA 469 VESVKAT+P+YV+RL GGL+YLSGM++M +NT++T IPA Sbjct: 426 VESVKATFPFYVLRLTGGLLYLSGMVIMLWNTFKTATAGRSVTVTIPA 473 >ref|YP_004846282.1| cytochrome c oxidase, cbb3-type subunit I [Pseudogulbenkiania sp. NH8B] dbj|BAK75868.1| cytochrome c oxidase, cbb3-type, subunit I [Pseudogulbenkiania sp. NH8B] Length = 475 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/475 (78%), Positives = 422/475 (88%), Gaps = 1/475 (0%) Query: 1 VSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 + +++YNY VVRQF + T++WG+VGMLVGV+IAAQL WPELN G P+ FGRLRPLHTN Sbjct: 1 MESQSTYNYKVVRQFAIMTVVWGIVGMLVGVVIAAQLVWPELNFG-PYFHFGRLRPLHTN 59 Query: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 AVIFAFGGC L ATSYYVVQRTC VRL SD LAAFTFWGWQLVI+ AAI+LPLGLT KE Sbjct: 60 AVIFAFGGCGLFATSYYVVQRTCNVRLISDKLAAFTFWGWQLVILAAAITLPLGLTSSKE 119 Query: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 YAELEWP+ ILI +VWVAYA+VFFGT+ RKV+HIYVANWFYG FI+AVA+LHIVN + + Sbjct: 120 YAELEWPIDILITIVWVAYAIVFFGTIAIRKVKHIYVANWFYGGFILAVALLHIVNNLEI 179 Query: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 P T+ KSYS+YSGA DAM+QWWYGHNAVGFFLTA FLGMMYYF+PKQ RPVYSYRLS+V Sbjct: 180 PVTMWKSYSVYSGAVDAMVQWWYGHNAVGFFLTAAFLGMMYYFVPKQAGRPVYSYRLSVV 239 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLIL APSWGGMING+MTLSGAWH+LR Sbjct: 240 HFWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILFAPSWGGMINGIMTLSGAWHKLR 299 Query: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGF+T+G+M Sbjct: 300 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFITIGSM 359 Query: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 YYL+PRL G+ +M S LIE HFW+AT+G+VLYIAA+WI+GVMQGLMWRA+N DGTLTY Sbjct: 360 YYLLPRLFGREEMHSVKLIEAHFWLATVGVVLYIAALWISGVMQGLMWRALNPDGTLTYA 419 Query: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 F E VKATYPY+ +RL+GG +YL+GMLVMAYNT+RT+ A IP+VT +AH Sbjct: 420 FAEVVKATYPYHFVRLLGGALYLTGMLVMAYNTFRTVTAGRAVDAKIPSVTASAH 474 >ref|ZP_03697589.1| cytochrome c oxidase, cbb3-type, subunit I [Lutiella nitroferrum 2002] gb|EEG09151.1| cytochrome c oxidase, cbb3-type, subunit I [Lutiella nitroferrum 2002] Length = 475 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/475 (78%), Positives = 422/475 (88%), Gaps = 1/475 (0%) Query: 1 VSKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTN 60 + +++YNY VVRQF + T++WG+VGMLVGV+IAAQL WPELN G P+ FGRLRPLHTN Sbjct: 1 MESQSTYNYKVVRQFAIMTVVWGIVGMLVGVVIAAQLVWPELNFG-PYFHFGRLRPLHTN 59 Query: 61 AVIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKE 120 AVIFAFGGC L ATSYYVVQRTC VRL SD LAAFTFWGWQLVI+ AAI+LPLGLT KE Sbjct: 60 AVIFAFGGCGLFATSYYVVQRTCNVRLISDKLAAFTFWGWQLVILAAAITLPLGLTSSKE 119 Query: 121 YAELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTM 180 YAELEWP+ ILI +VWVAYA+VFFGT+ RKV+HIYVANWFYG FI+AVA+LHIVN + + Sbjct: 120 YAELEWPIDILITIVWVAYAIVFFGTIAIRKVKHIYVANWFYGGFILAVALLHIVNNLEI 179 Query: 181 PATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIV 240 P T+ KSYS+YSGA DAM+QWWYGHNAVGFFLTA FLGMMYYF+PKQ RPVYSYRLS+V Sbjct: 180 PVTMWKSYSVYSGAVDAMVQWWYGHNAVGFFLTAAFLGMMYYFVPKQAGRPVYSYRLSVV 239 Query: 241 HFWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLR 300 HFWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLIL APSWGGMING+MTLSGAWH+LR Sbjct: 240 HFWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILFAPSWGGMINGIMTLSGAWHKLR 299 Query: 301 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAM 360 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGF+T+G+M Sbjct: 300 TDPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFITIGSM 359 Query: 361 YYLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYT 420 YYL+PRL G+ +M S LIE HFW+AT+G+VLYIAA+WI+GVMQGLMWRA+N DGTLTY Sbjct: 360 YYLLPRLFGREEMHSIKLIEAHFWLATVGVVLYIAALWISGVMQGLMWRALNPDGTLTYA 419 Query: 421 FVESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 F E VKATYPY+ +RL+GG +YL+GMLVMAYNT+RT+ A IP+VT +AH Sbjct: 420 FAEVVKATYPYHFVRLLGGALYLTGMLVMAYNTFRTVTAGRAVDAKIPSVTASAH 474 >ref|NP_900844.1| cbb3-type cytochrome c oxidase subunit I [Chromobacterium violaceum ATCC 12472] gb|AAQ58849.1| probable cytochrome-c oxidase, subunit I [Chromobacterium violaceum ATCC 12472] Length = 474 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/474 (78%), Positives = 420/474 (88%), Gaps = 1/474 (0%) Query: 2 SKENSYNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTNA 61 +++YNY VVRQF + T++WG+VGMLVGVIIAAQL WPELN G PW FGRLRPLHTNA Sbjct: 2 ETQSTYNYKVVRQFAIMTVVWGIVGMLVGVIIAAQLVWPELNFG-PWFHFGRLRPLHTNA 60 Query: 62 VIFAFGGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKEY 121 VIFAFGGC L ATSYYVVQRTC VRL SD LAA TFWGWQLVIV AAI+LPLG T KEY Sbjct: 61 VIFAFGGCGLFATSYYVVQRTCNVRLISDKLAAVTFWGWQLVIVLAAITLPLGFTTSKEY 120 Query: 122 AELEWPLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTMP 181 AELEWP+ +LIAV+WV YA+VFFGT+ RKV+HIYVANWFYGAFI+AVA+LHIVN +P Sbjct: 121 AELEWPIKLLIAVIWVIYAIVFFGTIAIRKVKHIYVANWFYGAFILAVALLHIVNSAFVP 180 Query: 182 ATLTKSYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVH 241 T+ KSYS+YSGA DAM+QWWYGHNAVGFFLTA FLGMMYYF+PKQ RPVYSYRLS+VH Sbjct: 181 VTMWKSYSVYSGAVDAMVQWWYGHNAVGFFLTAAFLGMMYYFVPKQAGRPVYSYRLSVVH 240 Query: 242 FWALIFTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLRT 301 FWALIFTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMING+MTLSGAWH+LRT Sbjct: 241 FWALIFTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGIMTLSGAWHKLRT 300 Query: 302 DPILKFLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMY 361 DP+LKFLVVSLSFYGMSTFEGPMM+IKTVNALSHYTDWTIGHVHSGALGWVGF+T+G+MY Sbjct: 301 DPVLKFLVVSLSFYGMSTFEGPMMSIKTVNALSHYTDWTIGHVHSGALGWVGFITIGSMY 360 Query: 362 YLIPRLSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYTF 421 YLIPRL G+ M S LIE HFW+AT+G+VLYIAA+WI+GVMQGLMWRA+N DGTLTY F Sbjct: 361 YLIPRLFGRETMHSVKLIEAHFWLATVGVVLYIAALWISGVMQGLMWRALNPDGTLTYAF 420 Query: 422 VESVKATYPYYVIRLMGGLMYLSGMLVMAYNTWRTMRGTELAVAPIPAVTNAAH 475 VE+VKATYPY+ +RL+GG +YLSGML+MAYNT+RT+ A IPA+T AH Sbjct: 421 VEAVKATYPYHTVRLLGGFLYLSGMLLMAYNTYRTVVAGRAVDAKIPAITAEAH 474 >ref|ZP_04761174.1| cytochrome c oxidase, cbb3-type, subunit I [Acidovorax delafieldii 2AN] gb|EER61993.1| cytochrome c oxidase, cbb3-type, subunit I [Acidovorax delafieldii 2AN] Length = 479 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/470 (80%), Positives = 422/470 (89%), Gaps = 3/470 (0%) Query: 7 YNYTVVRQFTVATILWGVVGMLVGVIIAAQLAWPELNMGVPWLSFGRLRPLHTNAVIFAF 66 Y+ TVVRQF++ ++WGVVGMLVGV IAAQLAWPELN G+PWLS+GRLRPLHTNAVIFAF Sbjct: 11 YSDTVVRQFSIMAVVWGVVGMLVGVFIAAQLAWPELNFGIPWLSYGRLRPLHTNAVIFAF 70 Query: 67 GGCALMATSYYVVQRTCQVRLFSDFLAAFTFWGWQLVIVGAAISLPLGLTRGKEYAELEW 126 GGC L ATSYYVVQRTCQ RLF+ LAAFTFW WQ+VIV AAISLPLG T+GKEYAELEW Sbjct: 71 GGCGLFATSYYVVQRTCQTRLFAPSLAAFTFWAWQIVIVAAAISLPLGYTQGKEYAELEW 130 Query: 127 PLTILIAVVWVAYAVVFFGTLIKRKVQHIYVANWFYGAFIIAVAILHIVNGMTMPATLTK 186 P+ ILIAV WV+YA+VFFGT+ RKV+HIYVANWF+GAFI+AVA+LHIVN +PA K Sbjct: 131 PIDILIAVTWVSYAIVFFGTVGTRKVKHIYVANWFFGAFILAVALLHIVNSAAIPAGFMK 190 Query: 187 SYSMYSGAQDAMIQWWYGHNAVGFFLTAGFLGMMYYFIPKQVNRPVYSYRLSIVHFWALI 246 SYS Y+G QDAM+QWWYGHNAVGFFLT GFLGMMYYFIPKQ RPVYSYRLSIVHFWALI Sbjct: 191 SYSAYAGVQDAMVQWWYGHNAVGFFLTTGFLGMMYYFIPKQAGRPVYSYRLSIVHFWALI 250 Query: 247 FTYMWAGPHHLHYTALPDWTQSLGMVFSLILLAPSWGGMINGMMTLSGAWHQLRTDPILK 306 FTYMWAGPHHLHYTALPDWTQS+GMVFSLILLAPSWGGMING+MTLSGAWH+LR DPIL+ Sbjct: 251 FTYMWAGPHHLHYTALPDWTQSVGMVFSLILLAPSWGGMINGIMTLSGAWHKLRDDPILR 310 Query: 307 FLVVSLSFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHSGALGWVGFVTMGAMYYLIPR 366 FL+VSLSFYGMSTFEGPMM+IKTVNALSHYTDWTIGHVHSGALGWVG +TMG++YYL+PR Sbjct: 311 FLIVSLSFYGMSTFEGPMMSIKTVNALSHYTDWTIGHVHSGALGWVGLITMGSLYYLVPR 370 Query: 367 LSGKTQMWSKDLIEIHFWVATIGIVLYIAAMWIAGVMQGLMWRAVNADGTLTYTFVESVK 426 L G+ +M S IE+HFW+ATIGIVLYIAAMWIAGVMQGLMWRA+N DGTLTYTFVESVK Sbjct: 371 LFGREKMHSIKAIELHFWMATIGIVLYIAAMWIAGVMQGLMWRAINPDGTLTYTFVESVK 430 Query: 427 ATYPYYVIRLMGGLMYLSGMLVMAYNTWRT-MRGTELAVAPIPAVTNAAH 475 ATYP+YVIR+ GGL+YL GM+VMA+N W T + G + VA IPAV NAAH Sbjct: 431 ATYPFYVIRVAGGLLYLGGMIVMAWNVWATAISGRSVKVA-IPAV-NAAH 478