BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0148.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776592.1| cbb3-type cytochrome c oxidase subunit II tr... 424 e-117 ref|YP_001353322.1| cb-type cytochrome c oxidase subunit II [Jan... 357 4e-97 ref|YP_001099926.1| cbb3-type cytochrome c oxidase subunit II [H... 352 3e-95 ref|ZP_08276120.1| Cytochrome c oxidase subunit CcoO [Oxalobacte... 348 4e-94 ref|ZP_04761173.1| cytochrome c oxidase, cbb3-type, subunit II [... 314 6e-84 ref|ZP_08505471.1| Cytochrome c oxidase cbb3-type, monoheme subu... 310 1e-82 ref|YP_003277854.1| cytochrome C oxidase cbb3-type subunit II [C... 309 1e-82 ref|YP_969887.1| cbb3-type cytochrome c oxidase subunit II [Acid... 306 1e-81 ref|YP_985396.1| cbb3-type cytochrome c oxidase subunit II [Acid... 305 2e-81 ref|YP_004127934.1| cytochrome c oxidase, cbb3-type, subunit ii ... 305 2e-81 >ref|YP_003776592.1| cbb3-type cytochrome c oxidase subunit II transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64684.1| cbb3-type cytochrome c oxidase, subunit II transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 2 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 61 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 Query: 62 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 121 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE Sbjct: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 120 Query: 122 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 181 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL Sbjct: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 Query: 182 VGKTEQDALIAYLQGLGVLIKAER 205 VGKTEQDALIAYLQGLGVLIKAER Sbjct: 181 VGKTEQDALIAYLQGLGVLIKAER 204 >ref|YP_001353322.1| cb-type cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] gb|ABR88270.1| cb-type cytochrome c oxidase subunit II [Janthinobacterium sp. Marseille] Length = 204 Score = 357 bits (917), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 169/204 (82%), Positives = 181/204 (88%) Query: 2 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 61 MKFSHEWIEKNPWLLI LV LVVS+GG EIVPLFFQKSTTEP+AGLKPYSALRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSALRLAGRDV 60 Query: 62 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 121 Y REGCYNCHSQMIRP RAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 122 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 181 WHR HL PRD+VPESNMP YPWL + KL DI+ RM+AL+R+G PYT+E+IK APAEL Sbjct: 121 WHRTHLDRPRDLVPESNMPGYPWLVKTKLVPNDIMPRMRALQRLGVPYTDEEIKAAPAEL 180 Query: 182 VGKTEQDALIAYLQGLGVLIKAER 205 GKTEQDAL+AYLQGLG+LIKA R Sbjct: 181 DGKTEQDALVAYLQGLGILIKARR 204 >ref|YP_001099926.1| cbb3-type cytochrome c oxidase subunit II [Herminiimonas arsenicoxydans] emb|CAL61801.1| Cytochrome c oxidase cbb3-type, monoheme subunit [Herminiimonas arsenicoxydans] Length = 204 Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 166/204 (81%), Positives = 178/204 (87%) Query: 2 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 61 MKFSHEWIEKNPWLLI LV LVVS+GG EIVPLFFQKSTTEP+AGLKPYS LRLAGRD+ Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSPLRLAGRDI 60 Query: 62 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 121 Y REGCYNCHSQMIRP RAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 122 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 181 WHR HL NPR VVPESNMP YPWL + KL +I+ +M AL+R+G PYTE+++K AP EL Sbjct: 121 WHRIHLDNPRHVVPESNMPNYPWLAKTKLVPEEIIPKMNALRRLGVPYTEDEVKAAPDEL 180 Query: 182 VGKTEQDALIAYLQGLGVLIKAER 205 VGKTEQDALIAYLQGLG LIKA R Sbjct: 181 VGKTEQDALIAYLQGLGTLIKARR 204 >ref|ZP_08276120.1| Cytochrome c oxidase subunit CcoO [Oxalobacteraceae bacterium IMCC9480] gb|EGF30409.1| Cytochrome c oxidase subunit CcoO [Oxalobacteraceae bacterium IMCC9480] Length = 204 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 159/202 (78%), Positives = 177/202 (87%) Query: 2 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 61 MKFSH WIEKNPWLLI LVL+V+SIGGL EIVPLFFQ STTEPI GLKPYSALRL+GRD+ Sbjct: 1 MKFSHAWIEKNPWLLIALVLVVISIGGLVEIVPLFFQSSTTEPITGLKPYSALRLSGRDI 60 Query: 62 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 121 Y+REGCYNCHSQMIRPLRAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVG RYSD+ Sbjct: 61 YVREGCYNCHSQMIRPLRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGARYSDD 120 Query: 122 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 181 WH HL+NPRD+VPESNMP YPWL KL D+ ++M+AL+R+G PYTE+++K+ P L Sbjct: 121 WHAIHLNNPRDLVPESNMPGYPWLATTKLVPGDVTAKMRALQRLGTPYTEQEVKDGPGTL 180 Query: 182 VGKTEQDALIAYLQGLGVLIKA 203 GKTEQDALIAYLQGLG LIK Sbjct: 181 EGKTEQDALIAYLQGLGTLIKT 202 >ref|ZP_04761173.1| cytochrome c oxidase, cbb3-type, subunit II [Acidovorax delafieldii 2AN] gb|EER61992.1| cytochrome c oxidase, cbb3-type, subunit II [Acidovorax delafieldii 2AN] Length = 210 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 144/199 (72%), Positives = 168/199 (84%) Query: 4 FSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDVYI 63 F+HE +E + +L+I L+LLV++IGGL EIVPLFFQKSTTE + G+KPYSAL+L GRDVYI Sbjct: 12 FTHEKVETSNFLMIVLILLVIAIGGLTEIVPLFFQKSTTEAVTGVKPYSALQLMGRDVYI 71 Query: 64 REGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDEWH 123 REGCYNCHSQMIRP RAET RYGHYSVAGE VYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 72 REGCYNCHSQMIRPFRAETLRYGHYSVAGEFVYDHPFQWGSKRTGPDLQRVGGKYSDEWH 131 Query: 124 RAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAELVG 183 R HL+NPRDVVPESNMPAYPWLE+ +D D+ RMKAL+ +G PYT+E I + AE+ G Sbjct: 132 RIHLNNPRDVVPESNMPAYPWLEKNAIDPADVAPRMKALRTVGVPYTDEQIAGSAAEVKG 191 Query: 184 KTEQDALIAYLQGLGVLIK 202 KTE DAL+AYLQ +G +K Sbjct: 192 KTEIDALVAYLQVMGRALK 210 >ref|ZP_08505471.1| Cytochrome c oxidase cbb3-type, monoheme subunit [Methyloversatilis universalis FAM5] gb|EGK71147.1| Cytochrome c oxidase cbb3-type, monoheme subunit [Methyloversatilis universalis FAM5] Length = 204 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 148/202 (73%), Positives = 164/202 (81%), Gaps = 1/202 (0%) Query: 1 MMKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRD 60 M HE IE+N LL L +L ++IGGL EIVPLFFQ STTEP+ G++PYS LRLAGRD Sbjct: 1 MAASKHEAIERNVGLLAILTVLTIAIGGLVEIVPLFFQHSTTEPVKGVEPYSPLRLAGRD 60 Query: 61 VYIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSD 120 +Y+REGCYNCHSQMIRP RAETERYGHYSVAGE VYD PFQWGSKRTGPDLARVG RYSD Sbjct: 61 IYVREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSD 120 Query: 121 EWHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAE 180 EWHR HL+NPRDVVPESNMPA+ WLE+ +D I RM+AL +G PYTEE IK+AP Sbjct: 121 EWHRVHLNNPRDVVPESNMPAFAWLER-PVDASTIEQRMRALTVVGTPYTEEQIKSAPEA 179 Query: 181 LVGKTEQDALIAYLQGLGVLIK 202 L GKTE DALIAYLQGLG IK Sbjct: 180 LKGKTEMDALIAYLQGLGTAIK 201 >ref|YP_003277854.1| cytochrome C oxidase cbb3-type subunit II [Comamonas testosteroni CNB-2] ref|ZP_07043608.1| cbb3-type cytochrome c oxidase subunit II [Comamonas testosteroni S44] gb|ACY32558.1| cytochrome c oxidase, cbb3-type, subunit II [Comamonas testosteroni CNB-2] gb|EFI62770.1| cbb3-type cytochrome c oxidase subunit II [Comamonas testosteroni S44] Length = 210 Score = 309 bits (792), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 143/199 (71%), Positives = 166/199 (83%) Query: 4 FSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDVYI 63 FSHE IE + +LLI L L V++IGGL EIVPLFFQKSTTE +AGLKPY+ L+L GRDVY+ Sbjct: 12 FSHEKIETSNFLLIALTLFVLTIGGLVEIVPLFFQKSTTEAVAGLKPYTPLQLMGRDVYL 71 Query: 64 REGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDEWH 123 REGCYNCHSQMIRP RAET RYGHYSVAGE VYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 72 REGCYNCHSQMIRPFRAETMRYGHYSVAGEFVYDHPFQWGSKRTGPDLHRVGGKYSDEWH 131 Query: 124 RAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAELVG 183 R HL+NPRDVVPESNMPAYPWLE K+D+ + +RM AL+++G PYT+ +I A AE+ Sbjct: 132 RIHLNNPRDVVPESNMPAYPWLEANKVDDTAVATRMSALRKVGVPYTDAEIAGAQAEVKD 191 Query: 184 KTEQDALIAYLQGLGVLIK 202 KTE +A+IAYLQ LG +K Sbjct: 192 KTEMEAVIAYLQVLGRAVK 210 >ref|YP_969887.1| cbb3-type cytochrome c oxidase subunit II [Acidovorax citrulli AAC00-1] gb|ABM32113.1| cytochrome c oxidase, cbb3-type, subunit II [Acidovorax citrulli AAC00-1] Length = 209 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 142/199 (71%), Positives = 165/199 (82%) Query: 4 FSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDVYI 63 FSHE IE N +L+I L++LVV+IGGLAEIVPLFFQKSTTEP+ G++PY+A +L GRD+Y+ Sbjct: 11 FSHEKIETNNFLMIVLIVLVVAIGGLAEIVPLFFQKSTTEPVNGVQPYTATQLLGRDIYL 70 Query: 64 REGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDEWH 123 REGCYNCHSQMIRP RAET RYGHYSVAGE VYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 71 REGCYNCHSQMIRPFRAETLRYGHYSVAGEFVYDHPFQWGSKRTGPDLHRVGGKYSDEWH 130 Query: 124 RAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAELVG 183 R HL+NPRDVVPESNMPAYPWLE+ +D RMKAL+ +G PYT+E I A E+ G Sbjct: 131 RIHLNNPRDVVPESNMPAYPWLEKTAVDPSVAAPRMKALRTVGVPYTDEQIAGAAEEVKG 190 Query: 184 KTEQDALIAYLQGLGVLIK 202 KTE D L+AYLQ +G +K Sbjct: 191 KTELDVLVAYLQVMGRALK 209 >ref|YP_985396.1| cbb3-type cytochrome c oxidase subunit II [Acidovorax sp. JS42] ref|YP_002552479.1| cbb3-type cytochrome c oxidase subunit II [Acidovorax ebreus TPSY] gb|ABM41320.1| cytochrome c oxidase, cbb3-type, subunit II [Acidovorax sp. JS42] gb|ACM32479.1| cytochrome c oxidase, cbb3-type, subunit II [Acidovorax ebreus TPSY] Length = 210 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 138/199 (69%), Positives = 169/199 (84%) Query: 4 FSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDVYI 63 F+HE +E + +L+I L+LLVV++GGL EIVPLFFQKSTTE + G+KPY+A++L GRD+Y+ Sbjct: 12 FTHEKVETSNFLMIVLILLVVAVGGLVEIVPLFFQKSTTEAVQGVKPYTAVQLIGRDIYL 71 Query: 64 REGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDEWH 123 REGCYNCHSQMIRP RAET RYGHYSVAGE VYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 72 REGCYNCHSQMIRPFRAETLRYGHYSVAGEFVYDHPFQWGSKRTGPDLHRVGGKYSDEWH 131 Query: 124 RAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAELVG 183 R HL+NPRDVVPESNMPAYPWLE+ ++D + RMKAL+ +G PYT+E+I +A ++ G Sbjct: 132 RIHLNNPRDVVPESNMPAYPWLEKNQIDPSVVAPRMKALRTVGVPYTDEEIASAAEQVKG 191 Query: 184 KTEQDALIAYLQGLGVLIK 202 KTE DA++AYLQ LG +K Sbjct: 192 KTEMDAVVAYLQVLGRALK 210 >ref|YP_004127934.1| cytochrome c oxidase, cbb3-type, subunit ii [Alicycliphilus denitrificans BC] ref|YP_004387042.1| cytochrome c oxidase, cbb3-type subunit II [Alicycliphilus denitrificans K601] gb|ADV01047.1| cytochrome c oxidase, cbb3-type, subunit II [Alicycliphilus denitrificans BC] gb|AEB83526.1| cytochrome c oxidase, cbb3-type, subunit II [Alicycliphilus denitrificans K601] Length = 210 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 141/199 (70%), Positives = 166/199 (83%) Query: 4 FSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDVYI 63 F+HE +E + +L+I L+LLVV+IGGL EIVPLFFQKSTTE + GLKPY+ L+LAGRD+Y+ Sbjct: 12 FTHEKVETSNFLMIVLILLVVAIGGLVEIVPLFFQKSTTEAVQGLKPYTPLQLAGRDIYV 71 Query: 64 REGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDEWH 123 REGCYNCHSQMIRP RAET RYGHYSVAGE VYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 72 REGCYNCHSQMIRPFRAETLRYGHYSVAGEFVYDHPFQWGSKRTGPDLHRVGGKYSDEWH 131 Query: 124 RAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAELVG 183 R HL+NPRDVVPESNMPAYPWLE+ +LD MKAL+ +G PYT+E+I A ++ G Sbjct: 132 RIHLNNPRDVVPESNMPAYPWLEKTQLDPAVSAPHMKALRTVGVPYTDEEIAGAAEQVKG 191 Query: 184 KTEQDALIAYLQGLGVLIK 202 KTE DAL+AYLQ LG ++ Sbjct: 192 KTEMDALVAYLQVLGRTLR 210