BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0142.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776587.1| Crp/Fnr family transcription regulator [Herb... 573 e-161 ref|YP_001353329.1| Crp/FNR family transcriptional regulator [Ja... 375 e-102 ref|YP_001099920.1| aerobic, anaerobic respiration, osmotic bala... 367 2e-99 ref|YP_001100589.1| aerobic, anaerobic respiration, osmotic bala... 364 7e-99 ref|ZP_08273907.1| transcriptional regulator, Crp/Fnr family [Ox... 338 4e-91 ref|YP_003775945.1| Crp/Fnr family transcription regulator [Herb... 322 5e-86 gb|EGW60239.1| transcriptional regulator, Crp/Fnr family [Dechlo... 270 1e-70 ref|YP_003523050.1| Crp/Fnr family transcriptional regulator [Si... 266 3e-69 ref|NP_903317.1| Crp/Fnr family transcriptional regulator [Chrom... 258 6e-67 ref|YP_002354943.1| Crp/Fnr family transcriptional regulator [Th... 258 8e-67 >ref|YP_003776587.1| Crp/Fnr family transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ64679.1| Crp/Fnr family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 277/278 (99%), Positives = 277/278 (99%) Query: 1 MNQSCHSTPITTPANAAAPLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDM 60 MNQSCHSTPITTPANAAAPLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDM Sbjct: 1 MNQSCHSTPITTPANAAAPLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDM 60 Query: 61 KRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLG 120 KRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLG Sbjct: 61 KRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLG 120 Query: 121 MDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIML 180 MDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIML Sbjct: 121 MDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIML 180 Query: 181 LGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRK 240 LGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRK Sbjct: 181 LGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRK 240 Query: 241 QGLLAVEQRDVEVVDLAALKRLAAGVDACTATPTRGTS 278 QGLLAVEQRDVEVVDLAALKRLAAGVDACTATPTR TS Sbjct: 241 QGLLAVEQRDVEVVDLAALKRLAAGVDACTATPTRSTS 278 >ref|YP_001353329.1| Crp/FNR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90137.1| transcriptional regulator, Crp/Fnr family [Janthinobacterium sp. Marseille] Length = 252 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/241 (74%), Positives = 210/241 (87%), Gaps = 2/241 (0%) Query: 32 AAASSALR-SCTACGMHQLCLPMGLDESDMKRLDKIIGRR-KVARDDFLYRIGDRFTALY 89 A + +ALR SC+ C MHQLCLPMGL E+DM RLDKIIGRR KVARDD+LYR+GD FT LY Sbjct: 12 ALSVNALRASCSTCSMHQLCLPMGLGENDMDRLDKIIGRRRKVARDDYLYRMGDAFTNLY 71 Query: 90 AVRVGHFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARL 149 AVRVGHFKT Q N G++QITGFQM GELLGMDAIST++H C+AVAL+DSEVCEIPF RL Sbjct: 72 AVRVGHFKTCQINAGGEQQITGFQMTGELLGMDAISTDRHHCNAVALEDSEVCEIPFPRL 131 Query: 150 EQLFGQIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSST 209 E+LFG +P LLRHFHR+MS EIT EQ+V++LLGNMRAEQRFAAFLVNL+SRY ARGYSST Sbjct: 132 EELFGTMPTLLRHFHRMMSQEITREQSVMLLLGNMRAEQRFAAFLVNLASRYMARGYSST 191 Query: 210 RFQLRMTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDAC 269 FQLRM+R+D+GNYLGLTIESISRL+SKF+KQGLL V R++E++DL LK +AAG + C Sbjct: 192 SFQLRMSREDIGNYLGLTIESISRLLSKFKKQGLLKVNNREIELLDLTLLKAMAAGTETC 251 Query: 270 T 270 + Sbjct: 252 S 252 >ref|YP_001099920.1| aerobic, anaerobic respiration, osmotic balance transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL61795.1| Transcriptional activator protein anr [Herminiimonas arsenicoxydans] Length = 251 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 172/237 (72%), Positives = 205/237 (86%), Gaps = 2/237 (0%) Query: 36 SALR-SCTACGMHQLCLPMGLDESDMKRLDKIIGRR-KVARDDFLYRIGDRFTALYAVRV 93 SA+R SC C MHQLCLPMGL E+D+ +LD+IIGRR KV RD +LYR+ D FT LYAVR+ Sbjct: 15 SAVRASCATCSMHQLCLPMGLGENDIDKLDQIIGRRRKVPRDGYLYRMDDPFTNLYAVRI 74 Query: 94 GHFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLF 153 GHFKTYQ N G++QITGFQM GELLGMDAIST++H CDA+AL+DSEVCEIPF RLE+LF Sbjct: 75 GHFKTYQVNAGGEQQITGFQMAGELLGMDAISTDRHHCDAIALEDSEVCEIPFPRLEELF 134 Query: 154 GQIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQL 213 G +P LLRHFHR+MS EIT EQ+V++LLGNMRAEQRFAAFLVNL+SRY ARGYSST FQL Sbjct: 135 GSMPILLRHFHRMMSQEITREQSVMLLLGNMRAEQRFAAFLVNLASRYVARGYSSTSFQL 194 Query: 214 RMTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDACT 270 RM+R+D+GNYLGLTIESISRL+SKF+KQGLL V R++E++DL LK +AAG + C+ Sbjct: 195 RMSREDIGNYLGLTIESISRLLSKFKKQGLLKVSNREIELLDLVTLKAMAAGTETCS 251 >ref|YP_001100589.1| aerobic, anaerobic respiration, osmotic balance transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL62467.1| Fumarate and nitrate reduction regulatory protein [Herminiimonas arsenicoxydans] Length = 282 Score = 364 bits (935), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 166/239 (69%), Positives = 200/239 (83%) Query: 35 SSALRSCTACGMHQLCLPMGLDESDMKRLDKIIGRRKVARDDFLYRIGDRFTALYAVRVG 94 SSALR C+ C M Q+CLP GL++ DM+RLD+II R+K+A+D +LYRIGD+FTALYAVR+G Sbjct: 15 SSALRHCSGCSMRQICLPAGLNQHDMRRLDQIIVRKKIAKDSYLYRIGDKFTALYAVRIG 74 Query: 95 HFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFG 154 HFKTYQEN G+RQI GFQM G+LLGMDAIS HQCDAVAL DSEVC IP++RLE LF Sbjct: 75 HFKTYQENFIGNRQINGFQMSGDLLGMDAISNLLHQCDAVALDDSEVCVIPYSRLEALFT 134 Query: 155 QIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLR 214 ++P L+RHFHRIMS EI EQN+IM+LGNM AEQRFAAFL+NLS RYA RGYS RFQLR Sbjct: 135 ELPILMRHFHRIMSQEIIGEQNMIMILGNMYAEQRFAAFLINLSRRYATRGYSPIRFQLR 194 Query: 215 MTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDACTATP 273 MTR+D+GNYLGLT+ESISR+I+K RK L+ + QRDVE++DL AL +LAAG+D +P Sbjct: 195 MTREDIGNYLGLTMESISRMIAKLRKGRLIEIVQRDVEILDLTALNKLAAGIDIIETSP 253 >ref|ZP_08273907.1| transcriptional regulator, Crp/Fnr family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32622.1| transcriptional regulator, Crp/Fnr family [Oxalobacteraceae bacterium IMCC9480] Length = 254 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 174/253 (68%), Positives = 205/253 (81%), Gaps = 5/253 (1%) Query: 19 PLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDMKRLDKIIGRRKVAR-DDF 77 PLT+ S T A+ A A SC +C +HQLCLPMGLDE D+ RLD+IIGRR+ + D+ Sbjct: 4 PLTY--SPTPAQTIHAIKA--SCASCSLHQLCLPMGLDEGDINRLDQIIGRRRRIQRDEA 59 Query: 78 LYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQ 137 LYR+ D F LYA+R GHFKT+Q N GD ITGFQM GELLGMDAISTE+H CDAVAL+ Sbjct: 60 LYRMEDPFRNLYAIRFGHFKTFQINPGGDTHITGFQMAGELLGMDAISTERHHCDAVALE 119 Query: 138 DSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNL 197 DSEVCEIPFARLE+LFG+IP LL HFHRIMS EI EQNV++LLGNMRAEQRFAAFLVNL Sbjct: 120 DSEVCEIPFARLEELFGEIPRLLHHFHRIMSQEIMREQNVMLLLGNMRAEQRFAAFLVNL 179 Query: 198 SSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLA 257 SSRYA RGYS+T FQLRM+R+D+GNYLGLTIESISRL+S+F+KQG L V++R+V ++D Sbjct: 180 SSRYATRGYSATSFQLRMSREDIGNYLGLTIESISRLLSRFKKQGWLEVDKREVRLLDAT 239 Query: 258 ALKRLAAGVDACT 270 L+ LAAG CT Sbjct: 240 MLRALAAGTTHCT 252 >ref|YP_003775945.1| Crp/Fnr family transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ64037.1| Crp/Fnr family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 322 bits (824), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 151/235 (64%), Positives = 190/235 (80%), Gaps = 2/235 (0%) Query: 37 ALR-SCTACGMHQLCLPMGLDESDMKRLDKIIGRR-KVARDDFLYRIGDRFTALYAVRVG 94 ALR SC+AC MHQLCLPMGLD+ DM+RL+++I RR KV RD+ LYR+ D+F LYA+R+G Sbjct: 20 ALRASCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRDETLYRLNDKFDMLYAIRLG 79 Query: 95 HFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFG 154 HFKT+Q N +G +QITGFQM GELLGMDAI H C+AVAL+DSEVCEIPFA LE LF Sbjct: 80 HFKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVALEDSEVCEIPFASLEDLFR 139 Query: 155 QIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLR 214 +P LLR FHR+MS EI+ EQ V++ LG+M A+Q+ AAFL+NLSSRY +RGYSSTRFQLR Sbjct: 140 DMPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLLNLSSRYMSRGYSSTRFQLR 199 Query: 215 MTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAGVDAC 269 MTR+++GNYLGL +ES+SRL++ F+K G++ V RDVE+ DL L+ +A G D C Sbjct: 200 MTREEIGNYLGLAVESVSRLLTNFKKSGVIEVNHRDVELCDLPTLRAVALGNDPC 254 >gb|EGW60239.1| transcriptional regulator, Crp/Fnr family [Dechlorosoma suillum PS] Length = 248 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/237 (53%), Positives = 175/237 (73%), Gaps = 1/237 (0%) Query: 27 TAAREAAASSALRSCTACGMHQLCLPMGLDESDMKRLDKIIG-RRKVARDDFLYRIGDRF 85 T+A+E S +C+ C + +LCLP GL+E++M +LD+++ RRK+ R D LYR G+ F Sbjct: 6 TSAQEITLSVIKTACSNCNLQELCLPYGLNETEMSKLDELVSTRRKIKRGDHLYRAGEAF 65 Query: 86 TALYAVRVGHFKTYQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIP 145 ++YA+R G FKT DG Q+TGFQM GELLG+D ISTE H C+AVAL+DSEVC IP Sbjct: 66 ESIYAIRAGFFKTDVLLEDGRDQVTGFQMAGELLGLDGISTEHHSCNAVALEDSEVCIIP 125 Query: 146 FARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARG 205 F RLE L +I L HFH++MS EI + V+MLLG MRAE+R AAFL+NLS R+ ARG Sbjct: 126 FPRLEGLSREIVALQHHFHKVMSREIVRDHGVMMLLGTMRAEERLAAFLLNLSQRFTARG 185 Query: 206 YSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRL 262 YS F LRMTR+++G+YLGL +E++SR S+F+++GL+AV+Q+ + ++D+ LK+L Sbjct: 186 YSHAEFYLRMTREEIGSYLGLKLETVSRAFSRFQEEGLIAVQQKHIRILDIPGLKKL 242 >ref|YP_003523050.1| Crp/Fnr family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gb|ADE10663.1| transcriptional regulator, Crp/Fnr family [Sideroxydans lithotrophicus ES-1] Length = 240 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 120/227 (52%), Positives = 172/227 (75%), Gaps = 1/227 (0%) Query: 40 SCTACGMHQLCLPMGLDESDMKRLDKIIG-RRKVARDDFLYRIGDRFTALYAVRVGHFKT 98 +C++C + +LCLP+ LD +M++LD + +R R ++LYR G+ F ALYA+R G FKT Sbjct: 13 ACSSCNLRELCLPVDLDGHEMQQLDALTSLKRTFRRGEYLYRSGEAFRALYAIRTGFFKT 72 Query: 99 YQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPH 158 + DG Q+TGFQMPGE++G+DAI ++ H CDAVAL+DSE+CEIPF RLE+L ++P+ Sbjct: 73 QALHEDGREQVTGFQMPGEIIGLDAICSDAHSCDAVALEDSEICEIPFDRLEELSRELPN 132 Query: 159 LLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQ 218 L RH H+IMS EI + ++MLLG+MRAE+R AAFL+NLS R++ARGYS F LRMTRQ Sbjct: 133 LQRHLHKIMSREIVRDHGIMMLLGSMRAEERLAAFLLNLSQRFSARGYSPNAFHLRMTRQ 192 Query: 219 DVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAG 265 ++G+YLGL +E++SR +S F++ GLL+V R+VE++D+ L+ G Sbjct: 193 EIGSYLGLKLETVSRTLSSFQEHGLLSVRVREVEIMDMLRLRSFVVG 239 >ref|NP_903317.1| Crp/Fnr family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gb|AAQ61309.1| probable transcription regulator protein, Crp/Fnr family [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 258 bits (660), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 115/227 (50%), Positives = 172/227 (75%), Gaps = 1/227 (0%) Query: 40 SCTACGMHQLCLPMGLDESDMKRLDKIIGR-RKVARDDFLYRIGDRFTALYAVRVGHFKT 98 SC++C + +LCLP+GL+ +M +LD +I + R++ R ++L+R G+ F +LYA+R G FKT Sbjct: 15 SCSSCSLRELCLPVGLNREEMGQLDAVIRQSRRLKRGEYLFRSGESFKSLYAIRTGFFKT 74 Query: 99 YQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPH 158 + DG Q+TGF M GEL+G+D IS+ H CDAVAL+DSEVCE+PF R+E L IP Sbjct: 75 CVASQDGREQVTGFLMSGELMGLDGISSSNHSCDAVALEDSEVCELPFTRMESLCRDIPS 134 Query: 159 LLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQ 218 L HF+R+MS EI +QNV++LLGNM+AE+R AAFL+NLS R + RG+++ F LRM+R+ Sbjct: 135 LQHHFYRLMSREIVRDQNVMLLLGNMKAEERIAAFLLNLSQRLSTRGFAANDFILRMSRE 194 Query: 219 DVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRLAAG 265 ++G++LGL +E++SR +SKF++QG + V+ + +++V LA LK L +G Sbjct: 195 EIGSFLGLKLETVSRTLSKFQQQGWITVDHKHIQLVQLAELKNLISG 241 >ref|YP_002354943.1| Crp/Fnr family transcriptional regulator [Thauera sp. MZ1T] gb|ACK54047.1| transcriptional regulator, Crp/Fnr family [Thauera sp. MZ1T] Length = 246 Score = 258 bits (658), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 120/224 (53%), Positives = 168/224 (75%), Gaps = 1/224 (0%) Query: 40 SCTACGMHQLCLPMGLDESDMKRLDKIIG-RRKVARDDFLYRIGDRFTALYAVRVGHFKT 98 +C+ C + +LCLP G+ + ++ RLD+++G RRKV R LYR GD F A+YA+R G FKT Sbjct: 15 ACSQCNLVELCLPFGMSDRELSRLDELVGARRKVKRQHNLYRAGDSFEAIYAIRAGSFKT 74 Query: 99 YQENLDGDRQITGFQMPGELLGMDAISTEQHQCDAVALQDSEVCEIPFARLEQLFGQIPH 158 DG Q+TGFQM GE+LG+D ISTE H C+AVAL+DSEVC I + +LEQ+ +I Sbjct: 75 DVLLEDGREQVTGFQMTGEILGLDGISTEAHSCNAVALEDSEVCVIAYDKLEQMSHEIEG 134 Query: 159 LLRHFHRIMSHEITSEQNVIMLLGNMRAEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQ 218 L FH++MS EI + V+MLLG+MRAE+R AAFL+N+S R+ ARG+S + F LRMTR+ Sbjct: 135 LQLQFHKVMSREIVRDHGVMMLLGSMRAEERLAAFLLNMSQRFTARGFSPSEFNLRMTRE 194 Query: 219 DVGNYLGLTIESISRLISKFRKQGLLAVEQRDVEVVDLAALKRL 262 ++G+YLGL +E++SR S+F++ GL+AV+Q+ V ++DLA LKRL Sbjct: 195 EIGSYLGLKLETVSRAFSRFQEDGLIAVQQKHVHLLDLAGLKRL 238