BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0140.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776584.1| outer membrane W protein [Herbaspirillum ser... 417 e-115 ref|YP_001100513.1| putative Outer membrane protein W [Herminiim... 275 3e-72 ref|YP_001352915.1| outer membrane protein W [Janthinobacterium ... 270 1e-70 ref|ZP_08275230.1| Outer membrane protein W precursor [Oxalobact... 253 1e-65 ref|YP_588014.1| outer membrane protein, OmpW family [Cupriavidu... 241 4e-62 ref|YP_299615.1| OmpW [Ralstonia eutropha JMP134] >gi|72122585|g... 241 5e-62 ref|YP_728251.1| OmpW family porin [Ralstonia eutropha H16] >gi|... 238 4e-61 ref|YP_004680289.1| porin OmpW family [Cupriavidus necator N-1] ... 234 4e-60 ref|YP_003277744.1| OmpW [Comamonas testosteroni CNB-2] >gi|2622... 231 3e-59 ref|ZP_03543931.1| OmpW family protein [Comamonas testosteroni K... 231 4e-59 >ref|YP_003776584.1| outer membrane W protein [Herbaspirillum seropedicae SmR1] emb|CAP19680.1| outer membrane protein W [Herbaspirillum seropedicae] gb|ADJ64676.1| outer membrane W protein [Herbaspirillum seropedicae SmR1] Length = 207 Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/207 (99%), Positives = 207/207 (100%) Query: 1 VKKIVTIAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITI 60 +KKIVTIAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITI Sbjct: 1 MKKIVTIAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITI 60 Query: 61 NSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSA 120 NSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSA Sbjct: 61 NSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSA 120 Query: 121 FSPYVGAGINYTRISSVNISGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSD 180 FSPYVGAGINYTRISSVNISGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSD Sbjct: 121 FSPYVGAGINYTRISSVNISGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSD 180 Query: 181 VKTAAGAKISSVKIDPWLIGVGVGYRF 207 VKTAAGAKISSVKIDPWLIGVGVGYRF Sbjct: 181 VKTAAGAKISSVKIDPWLIGVGVGYRF 207 >ref|YP_001100513.1| putative Outer membrane protein W [Herminiimonas arsenicoxydans] emb|CAL62391.1| putative outer membrane protein OmpW-like [Herminiimonas arsenicoxydans] Length = 206 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/204 (65%), Positives = 164/204 (80%), Gaps = 3/204 (1%) Query: 6 TIAAAAAAFASSFAAPVFAQEAQS-PWLVRVRAVHLSPENKSDPINGQGASDLITINSKT 64 ++ A A ++ ++ FAQ+ Q PWLVRVRAVHL P NKSDP+ G GA++ +TI+SKT Sbjct: 4 SVLALALCSLTALSSQAFAQQVQEGPWLVRVRAVHLDPANKSDPVGGTGAANRLTIDSKT 63 Query: 65 IPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSAFSPY 124 IPE+DISYFFT N AAELVLTYPQ+Q V L+G +IGTFKHLPP+L +QYHF P+ SPY Sbjct: 64 IPELDISYFFTPNWAAELVLTYPQKQRVSLDGKEIGTFKHLPPTLTMQYHFTPEKTISPY 123 Query: 125 VGAGINYTRISSVN-ISGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSDVKT 183 VGAGINYTRISSV ++G QL++SS G ALQ G D+KI+K W +N D+KKVQI SDV+T Sbjct: 124 VGAGINYTRISSVKLLNGAAQLESSSVGLALQAGVDFKIDKKWSLNLDVKKVQIRSDVRT 183 Query: 184 AAGAKISSVKIDPWLIGVGVGYRF 207 AAG ++S+VKIDPWLIGVGVGYRF Sbjct: 184 AAG-QLSAVKIDPWLIGVGVGYRF 206 >ref|YP_001352915.1| outer membrane protein W [Janthinobacterium sp. Marseille] gb|ABR89936.1| outer membrane protein W [Janthinobacterium sp. Marseille] Length = 206 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 137/208 (65%), Positives = 163/208 (78%), Gaps = 6/208 (2%) Query: 2 KKIVTIAAAAAAFASSFAAPVFAQEAQS-PWLVRVRAVHLSPENKSDPINGQGASDLITI 60 K ++ IA + A SS A FAQ+ Q WLVRVRAV+L P NKSDPI G GASD +TI Sbjct: 3 KSVLAIALCSLAALSSQA---FAQQTQEGSWLVRVRAVNLDPANKSDPIGGVGASDRLTI 59 Query: 61 NSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSA 120 NSK IPE+DISYFFT N A ELVLTYPQ+Q V L+G++IGTFKHLPP+L +QYHF P+ Sbjct: 60 NSKVIPELDISYFFTPNWATELVLTYPQKQKVSLDGTQIGTFKHLPPTLTLQYHFTPEKT 119 Query: 121 FSPYVGAGINYTRISSVN-ISGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISS 179 SPYVGAGINYTRISSV+ ++G L+ SS G ALQ G D+KI+KNW IN D+KKVQI S Sbjct: 120 ISPYVGAGINYTRISSVDLLNGAATLEKSSVGLALQAGVDFKIDKNWSINLDVKKVQIRS 179 Query: 180 DVKTAAGAKISSVKIDPWLIGVGVGYRF 207 DV TAAG ++S+VK+DPWL+GVGVGYRF Sbjct: 180 DVNTAAG-QLSAVKVDPWLVGVGVGYRF 206 >ref|ZP_08275230.1| Outer membrane protein W precursor [Oxalobacteraceae bacterium IMCC9480] gb|EGF31307.1| Outer membrane protein W precursor [Oxalobacteraceae bacterium IMCC9480] Length = 205 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 118/191 (61%), Positives = 153/191 (80%), Gaps = 3/191 (1%) Query: 18 FAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITINSKTIPEVDISYFFTKN 77 F+ AQ+ QSPW VR R ++L+P + SDP+ G GASD ++++ KTIPEVDISYFFT N Sbjct: 17 FSTQAMAQQ-QSPWQVRARVINLAPADNSDPVGGAGASDRLSVSKKTIPEVDISYFFTPN 75 Query: 78 IAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSAFSPYVGAGINYTRISSV 137 +AAELVLTYPQ+ V L+G+ +GTFKHLPP+LL+QYHFMPD FSPYVGAG+NYTRIS+V Sbjct: 76 LAAELVLTYPQKHTVYLDGNNVGTFKHLPPTLLLQYHFMPDKQFSPYVGAGVNYTRISNV 135 Query: 138 NISGGL-QLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSDVKTAAGAKISSVKIDP 196 N+ GG L++SS G ALQ G DYK++KNW +N DIKKVQI SD+ +G K S++++DP Sbjct: 136 NLLGGAGSLESSSVGFALQAGVDYKLDKNWSLNLDIKKVQIRSDLMI-SGVKASALQVDP 194 Query: 197 WLIGVGVGYRF 207 ++GVG+GYRF Sbjct: 195 LMVGVGLGYRF 205 >ref|YP_588014.1| outer membrane protein, OmpW family [Cupriavidus metallidurans CH34] gb|ABF12745.1| outer membrane protein, OmpW family [Cupriavidus metallidurans CH34] Length = 245 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 115/205 (56%), Positives = 150/205 (73%), Gaps = 2/205 (0%) Query: 5 VTIAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITINSKT 64 + +A AA + A V A E QS W++R+R L+ +NKSDP+ G GASD I++N+K Sbjct: 41 ICMALTAATIGALSAPAVAADEQQSNWMIRLRGTFLNMDNKSDPVGGVGASDRISVNNKW 100 Query: 65 IPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSAFSPY 124 IPE+D++YF NIAAELVLT PQ+QDVRL+G+KIGTF HLPPSLL+QYHF+P+ F PY Sbjct: 101 IPELDVTYFIVPNIAAELVLTIPQKQDVRLDGAKIGTFSHLPPSLLLQYHFIPNGTFRPY 160 Query: 125 VGAGINYTRISSVNISGG-LQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSDV-K 182 VGAG+N TRI +I+G L LD S G ALQ+G DYK+ KNW +N D+KK+ ISS+V Sbjct: 161 VGAGVNVTRIWGADIAGNTLGLDRWSVGPALQVGMDYKVTKNWFLNVDVKKIWISSNVYA 220 Query: 183 TAAGAKISSVKIDPWLIGVGVGYRF 207 G K+S+V+++PWL GVGYRF Sbjct: 221 NGTGQKVSNVQLNPWLFSAGVGYRF 245 >ref|YP_299615.1| OmpW [Ralstonia eutropha JMP134] gb|AAZ64771.1| OmpW [Ralstonia eutropha JMP134] Length = 216 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 121/211 (57%), Positives = 151/211 (71%), Gaps = 5/211 (2%) Query: 1 VKKIVTIAAAAAAFASSFAAPVFAQ--EAQSPWLVRVRAVHLSPENKSDPINGQGA-SDL 57 + ++ A AA A + + P A E Q W+VR+RA +L +KSD I G SD Sbjct: 7 LTRVACTAIAAFAMFGAVSTPALAADGETQGNWMVRLRATYLDMADKSDAIPALGVPSDA 66 Query: 58 ITINSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMP 117 IT+N+K IPE+D++YFFT+NIAAELVLT PQ+QDV LNG++IGTFKHLPP+LLVQYHF+P Sbjct: 67 ITVNNKWIPELDVTYFFTRNIAAELVLTVPQKQDVYLNGNRIGTFKHLPPTLLVQYHFLP 126 Query: 118 DSAFSPYVGAGINYTRISSVNISGG-LQLDNSSFGGALQIGADYKINKNWLINFDIKKVQ 176 + PYVGAG+N+TRI +I+ LQLDN S ALQIG DYK+ KNW +N DIKKV Sbjct: 127 EGTIRPYVGAGLNFTRIWGADIANNTLQLDNWSVAPALQIGMDYKLTKNWFLNADIKKVW 186 Query: 177 ISSDVKTAAGAKISSVKIDPWLIGVGVGYRF 207 + SDVK A G KIS V +DPWL +GVGYRF Sbjct: 187 LGSDVK-AGGEKISKVNLDPWLFSMGVGYRF 216 >ref|YP_728251.1| OmpW family porin [Ralstonia eutropha H16] emb|CAJ94886.1| Porin, OmpW family [Ralstonia eutropha H16] Length = 214 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/200 (58%), Positives = 146/200 (73%), Gaps = 2/200 (1%) Query: 9 AAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITINSKTIPEV 68 AA A + A +AQ W+VR+R +L N SDP+ G G SD IT+N+K IPE Sbjct: 16 AACAMLGAFATPAAAADDAQGNWMVRLRGTYLDMANSSDPVGGVGPSDRITVNNKWIPEF 75 Query: 69 DISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSAFSPYVGAG 128 D++YFFT NIAAELVLT PQ+QDV L+G+K+GTFKHLPP+LLVQYHF+P+ F PY+GAG Sbjct: 76 DVTYFFTPNIAAELVLTVPQKQDVYLDGNKVGTFKHLPPTLLVQYHFIPNGTFRPYIGAG 135 Query: 129 INYTRISSVNISGG-LQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSDVKTAAGA 187 +N+TRI +I+ LQLD+ S G ALQIG DYK+ KNW +N DIKK+ +SSDVK A Sbjct: 136 LNFTRIWGADIANNSLQLDSWSVGPALQIGMDYKLTKNWFLNADIKKIWLSSDVK-AGDV 194 Query: 188 KISSVKIDPWLIGVGVGYRF 207 K+S V +DPWL +GVGYRF Sbjct: 195 KVSKVNLDPWLFSMGVGYRF 214 >ref|YP_004680289.1| porin OmpW family [Cupriavidus necator N-1] gb|AEI79057.1| porin OmpW family [Cupriavidus necator N-1] Length = 214 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/200 (57%), Positives = 145/200 (72%), Gaps = 2/200 (1%) Query: 9 AAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDLITINSKTIPEV 68 AA A + A +AQ W+VR+R +L SDP+ G G SD IT+N+K IPE Sbjct: 16 AACAMLGAFATPAAAADDAQGNWMVRLRGTYLDMAKSSDPVGGVGPSDRITVNNKWIPEF 75 Query: 69 DISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSAFSPYVGAG 128 D++YFFT NIAAELVLT PQ+Q+V L+G+K+GTFKHLPP+LLVQYHF+P+ F PY+GAG Sbjct: 76 DVTYFFTPNIAAELVLTVPQKQNVYLDGNKVGTFKHLPPTLLVQYHFIPNGTFRPYIGAG 135 Query: 129 INYTRISSVNIS-GGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISSDVKTAAGA 187 +N+TRI NI+ LQLD+ S G ALQIG DYK+ KNW +N DIKK+ +SSDVK A Sbjct: 136 LNFTRIWGENIANNALQLDSWSVGPALQIGMDYKLTKNWFLNADIKKIWLSSDVK-AGDV 194 Query: 188 KISSVKIDPWLIGVGVGYRF 207 K+S V +DPWL +GVGYRF Sbjct: 195 KVSKVNLDPWLFSMGVGYRF 214 >ref|YP_003277744.1| OmpW [Comamonas testosteroni CNB-2] gb|ACY32448.1| OmpW [Comamonas testosteroni CNB-2] Length = 204 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 116/208 (55%), Positives = 148/208 (71%), Gaps = 8/208 (3%) Query: 2 KKIVTIAAAAAAFASSFAAPVFAQEAQSPWLVRVRAVHLSPENKSDPINGQGASDL-ITI 60 K ++ IAA A+A + A + + SPW VRVRA+HL D NG A D ++I Sbjct: 3 KTLIAIAAVASALTAGTAFAQSSFDGSSPWQVRVRALHL------DSDNGGAAGDAGVSI 56 Query: 61 NSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPDSA 120 N+K +PE+D+SYFFT NIAAELVLTYPQ+ DVRLNG KIG+ KHLPP+LL QYHF A Sbjct: 57 NNKWMPELDVSYFFTPNIAAELVLTYPQKHDVRLNGGKIGSLKHLPPTLLAQYHFTNFGA 116 Query: 121 FSPYVGAGINYTRISSVNI-SGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQISS 179 F PYVGAG+NYTR S+V+I G + + +SFGGALQ+G DY ++KNW +NFDIKKV + + Sbjct: 117 FKPYVGAGVNYTRFSNVDILDGAVTVKKNSFGGALQVGFDYALDKNWSLNFDIKKVYLGT 176 Query: 180 DVKTAAGAKISSVKIDPWLIGVGVGYRF 207 V A + + K+DPWL+GVGVGYRF Sbjct: 177 KVTGAGVFENTKFKVDPWLVGVGVGYRF 204 >ref|ZP_03543931.1| OmpW family protein [Comamonas testosteroni KF-1] gb|EED68217.1| OmpW family protein [Comamonas testosteroni KF-1] Length = 204 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 115/210 (54%), Positives = 148/210 (70%), Gaps = 12/210 (5%) Query: 2 KKIVTIAAAAAAFASSFAAPVFAQ---EAQSPWLVRVRAVHLSPENKSDPINGQGASDLI 58 K ++ IAA A+A A FAQ + SPW+VR RAVHL +N +G + Sbjct: 3 KTLIAIAAVASALT---AGAAFAQSSFDGTSPWMVRARAVHLDSDN-----SGAAGDAGV 54 Query: 59 TINSKTIPEVDISYFFTKNIAAELVLTYPQEQDVRLNGSKIGTFKHLPPSLLVQYHFMPD 118 +IN+K +PE+D+SYFFT NIAAEL+LT+PQ+ DVRLNG KIGT KHLPP+LL QYHF Sbjct: 55 SINNKWMPELDVSYFFTPNIAAELILTFPQKHDVRLNGDKIGTLKHLPPTLLAQYHFTNF 114 Query: 119 SAFSPYVGAGINYTRISSVNI-SGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKVQI 177 AF PYVGAG+NYTR S+V+I G + + +SFGGALQIG DY ++KNW +NFD+KKV + Sbjct: 115 GAFKPYVGAGVNYTRFSNVSILDGAVTVKKNSFGGALQIGFDYALDKNWSLNFDVKKVYL 174 Query: 178 SSDVKTAAGAKISSVKIDPWLIGVGVGYRF 207 + V A + + K+DPWL+GVGVGYRF Sbjct: 175 GTKVTGAGVFQDTKFKVDPWLVGVGVGYRF 204