BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0130.p         (258 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776575.1| membrane protein [Herbaspirillum seropedicae...   507   e-142

>ref|YP_003776575.1| membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64667.1| membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  507 bits (1305), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/258 (98%), Positives = 257/258 (99%)

Query: 1   LCCLLPLALLLAACSPPRTDDASVASDYQVVSSPVKAIVKEVLVKPGQQVEEGALLLTLN 60
           LCCLLPLALLLAACSPPRTDDASVASDYQVVSSPVKAIVKEVLVKPGQQVEEGALLLTLN
Sbjct: 24  LCCLLPLALLLAACSPPRTDDASVASDYQVVSSPVKAIVKEVLVKPGQQVEEGALLLTLN 83

Query: 61  PEIDPMAHVMEVTRNVLGDPGAQKQNGGMPARRPTMEDMMAAVRADQENVREKSNRWAES 120
           PEIDPMAHVMEVTRNVLGDPGAQKQN GMPARRPTMEDMMAAVRADQ+NVREKSNRWAES
Sbjct: 84  PEIDPMAHVMEVTRNVLGDPGAQKQNEGMPARRPTMEDMMAAVRADQDNVREKSNRWAES 143

Query: 121 AGQVVDVLVKPDQAIVPEQPLLAISSGDFIVVARFKEDEVKQLRVGQRAQVQLMEQVIEP 180
           AGQVVDVLVKPDQAIVPEQPLLAISSGDFIVVARFKEDEVKQLRVGQRAQVQLMEQVIEP
Sbjct: 144 AGQVVDVLVKPDQAIVPEQPLLAISSGDFIVVARFKEDEVKQLRVGQRAQVQLMEQVIEP 203

Query: 181 DRQGRRRDTDRPSEQIFSGSLKAFGDVPAEGNPEATIEAGPNVKVVARAPVQIVLDVPPA 240
           DRQGRRRDTDRPSEQIFSGSLKAFGDVPAEG+PEATIEAGPNVKVVARAPVQIVLDVPPA
Sbjct: 204 DRQGRRRDTDRPSEQIFSGSLKAFGDVPAEGSPEATIEAGPNVKVVARAPVQIVLDVPPA 263

Query: 241 QRGLFRRGRAALVTMQKD 258
           QRGLFRRGRAALVTMQKD
Sbjct: 264 QRGLFRRGRAALVTMQKD 281