BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0117.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776560.1| hypothetical protein Hsero_3170 [Herbaspiril... 509 e-142 ref|YP_002890463.1| hypothetical protein Tmz1t_3492 [Thauera sp.... 172 5e-41 ref|YP_001792575.1| hypothetical protein Lcho_3556 [Leptothrix c... 172 6e-41 ref|YP_998132.1| hypothetical protein Veis_3393 [Verminephrobact... 169 3e-40 ref|ZP_08403732.1| hypothetical protein RBXJA2T_17122 [Rubriviva... 168 9e-40 ref|YP_002943759.1| hypothetical protein Vapar_1843 [Variovorax ... 168 9e-40 ref|ZP_08407028.1| hypothetical protein HGR_14184 [Hylemonella g... 167 1e-39 ref|ZP_08019311.1| hypothetical protein HMPREF0551_2159 [Lautrop... 167 1e-39 ref|YP_002943479.1| hypothetical protein Vapar_1562 [Variovorax ... 167 2e-39 ref|ZP_01916376.1| hypothetical protein LMED105_10945 [Limnobact... 166 5e-39 >ref|YP_003776560.1| hypothetical protein Hsero_3170 [Herbaspirillum seropedicae SmR1] gb|ADJ64652.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 254/256 (99%), Positives = 256/256 (100%) Query: 1 MKTLYWIGGIVAAGLLVGSGVRLLAHSDAQAAPAAAAPAPHAAAPGAPLAGAVPAVTARA 60 MKTLYW+GGIVAAGLLVGSGVRLLAHSDAQAAPAAAAPAPHAAAPGAPLAGAVPAVTARA Sbjct: 1 MKTLYWMGGIVAAGLLVGSGVRLLAHSDAQAAPAAAAPAPHAAAPGAPLAGAVPAVTARA 60 Query: 61 DAGSTVPGVAAATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDPM 120 DAGSTVPGVAAATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDPM Sbjct: 61 DAGSTVPGVAAATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDPM 120 Query: 121 APFKGLKLDQLTDDDPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEALK 180 APFKGLKLDQLTD+DPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEALK Sbjct: 121 APFKGLKLDQLTDEDPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEALK 180 Query: 181 EFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY 240 EFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY Sbjct: 181 EFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY 240 Query: 241 SMKAVSVEPYTAPDNG 256 SMKAVSVEPYTAPDNG Sbjct: 241 SMKAVSVEPYTAPDNG 256 >ref|YP_002890463.1| hypothetical protein Tmz1t_3492 [Thauera sp. MZ1T] gb|ACR02086.1| conserved hypothetical protein [Thauera sp. MZ1T] Length = 214 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 89/182 (48%), Positives = 114/182 (62%), Gaps = 11/182 (6%) Query: 70 AAATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDPMAPFKGLKLD 129 A + GQY VGD+L A GK ++EI+W+ LIP DW+P GL+LD Sbjct: 37 AGESAGQYAVGDRLAAP---------APGK--GEFREISWDDLIPADWNPEGFLSGLELD 85 Query: 130 QLTDDDPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEALKEFLLVPYFG 189 +L D+DPRA AL + ++ W AP+ M G VR+PGFVV L+ GE ++EFLLVPYFG Sbjct: 86 KLEDNDPRAAEALQRMREEWDRAPLVERMAGARVRIPGFVVPLETSGEKIREFLLVPYFG 145 Query: 190 ACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSYSMKAVSVEP 249 AC+HVPPPPANQ+IHV K V M VW+ GV+ V R DS MG + Y ++AV VE Sbjct: 146 ACVHVPPPPANQLIHVIPDKPVPGGWNMLPVWVDGVMAVGRIDSDMGTAGYQLRAVKVEE 205 Query: 250 YT 251 Y Sbjct: 206 YV 207 >ref|YP_001792575.1| hypothetical protein Lcho_3556 [Leptothrix cholodnii SP-6] gb|ACB35810.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 190 Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 80/150 (53%), Positives = 102/150 (68%) Query: 104 YQEIAWEALIPKDWDPMAPFKGLKLDQLTDDDPRADAALWKAKKYWKDAPVDASMEGKPV 163 ++EI W+ L+PKDWDP F+ KLD LTD+DPR++A L + ++ W AP + M G V Sbjct: 40 FKEIRWDELVPKDWDPYKRFRDKKLDGLTDNDPRSEAMLKEMREVWDAAPTNPLMNGARV 99 Query: 164 RLPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWIS 223 RL G++V L+ LKEFLLVPYFGACIH PPPPANQIIHV A+ +K + M VW++ Sbjct: 100 RLAGYIVPLEEAKGELKEFLLVPYFGACIHTPPPPANQIIHVLPAQPLKGFKGMVPVWVN 159 Query: 224 GVLKVERSDSSMGASSYSMKAVSVEPYTAP 253 G LK +R DS MG S Y + AV VE Y P Sbjct: 160 GTLKTQRDDSMMGVSGYHLDAVKVEHYEVP 189 >ref|YP_998132.1| hypothetical protein Veis_3393 [Verminephrobacter eiseniae EF01-2] gb|ABM59114.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2] Length = 184 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 76/151 (50%), Positives = 108/151 (71%), Gaps = 1/151 (0%) Query: 104 YQEIAWEALIPKDWDPMAPFKGLK-LDQLTDDDPRADAALWKAKKYWKDAPVDASMEGKP 162 Y+EI+W+ L+PKDWDPM F+ L+ LD L D DPR + ++ W AP +M+GK Sbjct: 30 YREISWDDLVPKDWDPMKSFRDLQNLDALPDTDPRIQKLYDRMRQVWDSAPTVPAMQGKE 89 Query: 163 VRLPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWI 222 R+ G++V L+ + ++EFLLVPYFGACIH+PPPPANQI+HVR++ V+ +R+MDAVW+ Sbjct: 90 GRIAGYLVPLEEGKQGIREFLLVPYFGACIHLPPPPANQIVHVRASTPVRGLRSMDAVWV 149 Query: 223 SGVLKVERSDSSMGASSYSMKAVSVEPYTAP 253 SG ++RSDS++G S Y+M A SV + P Sbjct: 150 SGRFGLQRSDSTLGVSGYTMTADSVTKHQGP 180 >ref|ZP_08403732.1| hypothetical protein RBXJA2T_17122 [Rubrivivax benzoatilyticus JA2] gb|EGJ12065.1| hypothetical protein RBXJA2T_17122 [Rubrivivax benzoatilyticus JA2] Length = 195 Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 79/147 (53%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 105 QEIAWEALIPKDWDPMAPFKGLKLDQLTDDDPRADAALWKAKKYWKDAPVDASMEGKPVR 164 + I W+ L+P+DWDPM FK L L L D DPRA+ L + ++ W AP + ++ G+ VR Sbjct: 46 RTIGWDQLVPRDWDPMKEFKDLDLAGLADGDPRANKLLQRMREIWDAAPANPAIVGQAVR 105 Query: 165 LPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISG 224 LPGFVV L+ + LKEFLLVPYFGACIH PPPPANQI+HV +A+ V ++MD VW+SG Sbjct: 106 LPGFVVPLEETKQGLKEFLLVPYFGACIHSPPPPANQIVHVFAARPVA-FKSMDTVWVSG 164 Query: 225 VLKVERSDSSMGASSYSMKAVSVEPYT 251 L R D+ MGASSY + +VE YT Sbjct: 165 TLATVRGDTYMGASSYRIDGAAVERYT 191 >ref|YP_002943759.1| hypothetical protein Vapar_1843 [Variovorax paradoxus S110] gb|ACS18493.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 192 Score = 168 bits (425), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 78/149 (52%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 105 QEIAWEALIPKDWDPMAPFKGLKLDQLTDDDPRADAALWKAKKYWKDAPVDASMEGKPVR 164 QE+ WEAL+PKDWDP ++ L L+ L D+DPRA L + + W +APV+ +++G R Sbjct: 42 QELKWEALVPKDWDPTKRYRNLSLESLRDNDPRAIQMLDEMRAVWDNAPVNVALDGTAAR 101 Query: 165 LPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISG 224 L GFVV LD ++EFLLVPYFGACIH PPPPANQI+HV +A VK + MD V +SG Sbjct: 102 LSGFVVPLDNTQGGIREFLLVPYFGACIHTPPPPANQIVHVVAADTVKGLHAMDTVHVSG 161 Query: 225 VLKVERSDS-SMGASSYSMKAVSVEPYTA 252 +LK R S MG S Y +K+ SVEP+ Sbjct: 162 LLKAARYSSVDMGVSGYEIKSASVEPFVT 190 >ref|ZP_08407028.1| hypothetical protein HGR_14184 [Hylemonella gracilis ATCC 19624] gb|EGI75846.1| hypothetical protein HGR_14184 [Hylemonella gracilis ATCC 19624] Length = 186 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/149 (51%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 104 YQEIAWEALIPKDWDPMAPFKGLK-LDQLTDDDPRADAALWKAKKYWKDAPVDASMEGKP 162 Y E+ WE L+P+DW+P F+ L+ L L D D R + +K W +AP +++GK Sbjct: 36 YAELKWEELVPQDWNPADSFRDLQHLMGLPDSDDRVQELYDRMRKVWDEAPTVPTLKGKA 95 Query: 163 VRLPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWI 222 V++PGF+V L+R + L+EFLLVPYFGACIH PPPPANQIIHVRS +K +M AVW+ Sbjct: 96 VKVPGFIVPLERSADGLREFLLVPYFGACIHTPPPPANQIIHVRSKTPLKGFESMSAVWV 155 Query: 223 SGVLKVERSDSSMGASSYSMKAVSVEPYT 251 SG L +ER+ S MGAS YS++A V YT Sbjct: 156 SGTLSLERTGSDMGASGYSLQAARVVKYT 184 >ref|ZP_08019311.1| hypothetical protein HMPREF0551_2159 [Lautropia mirabilis ATCC 51599] gb|EFV94044.1| hypothetical protein HMPREF0551_2159 [Lautropia mirabilis ATCC 51599] Length = 351 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 130/214 (60%), Gaps = 14/214 (6%) Query: 49 LAGAVPAVTAR--ADAGSTVPGVAA-----ATNGQYQVGDQLKQSPAVTDKPYQASGKMV 101 L +P AR A AGST G + A +G+ + D Q A +SG Sbjct: 136 LGEELPKARARNQAGAGSTTAGDGSGQKQPAADGERRAQDGKDQGQA------SSSGADA 189 Query: 102 NGYQEIAWEALIPKDWDPMAPFKGLKLDQLTDDDPRADAALWKAKKYWKDAPVDASMEGK 161 GY+ + WE LIPKDW+P+ FK L + ++D DPRA AAL K +K WK+AP++ +++ + Sbjct: 190 QGYRPMDWEVLIPKDWEPLRDFKSLNFNGMSDSDPRAIAALRKLQKAWKNAPLNPAIQNE 249 Query: 162 PVRLPGFVVSLDR-EGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAV 220 + + GF+V LD + ++EFLLVPYFGACIHVPPPP+NQ+IHV A+ +K + MD V Sbjct: 250 KIVISGFIVPLDSSDSSTIEEFLLVPYFGACIHVPPPPSNQVIHVVPAQPLKGFQMMDPV 309 Query: 221 WISGVLKVERSDSSMGASSYSMKAVSVEPYTAPD 254 ++G L R D+ G++ Y M+A +V PY P+ Sbjct: 310 TVTGDLSPSRIDTPYGSAGYEMQAKTVAPYEDPE 343 >ref|YP_002943479.1| hypothetical protein Vapar_1562 [Variovorax paradoxus S110] gb|ACS18213.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 213 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/147 (51%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 105 QEIAWEALIPKDWDPMAPFKGLKLDQLTDDDPRADAALWKAKKYWKDAPVDASMEGKPVR 164 ++I WE L+PKDWDP FKG+ L L D DPRA+ L K ++ +AP + SM G ++ Sbjct: 64 RQITWEELVPKDWDPAKEFKGMDLSALNDGDPRANELLMKMQEVSNNAPTNPSMNGADIK 123 Query: 165 LPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISG 224 +PGF+V L+ + EFLLVPYFGACIH PPPPANQI+HV + K K R MD VW++G Sbjct: 124 IPGFIVPLEEAKGEVTEFLLVPYFGACIHTPPPPANQILHVVTPKGAK-FRAMDTVWVTG 182 Query: 225 VLKVERSDSSMGASSYSMKAVSVEPYT 251 L+ R+DS MG S Y + A SV YT Sbjct: 183 KLQTLRNDSMMGVSGYHVNATSVTKYT 209 >ref|ZP_01916376.1| hypothetical protein LMED105_10945 [Limnobacter sp. MED105] gb|EDM82353.1| hypothetical protein LMED105_10945 [Limnobacter sp. MED105] Length = 234 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 115/180 (63%), Gaps = 3/180 (1%) Query: 71 AATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDPMAPFKGLKLDQ 130 A+T+ +Y VGD+L S DK + + + E+ W+ L+P DWDPMA F+G+ + + Sbjct: 56 ASTDSEYAVGDRLTGS---ADKGGKKAAVFDPAFPELQWDNLMPADWDPMAAFRGMNIAE 112 Query: 131 LTDDDPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEALKEFLLVPYFGA 190 L D+DP+A AL K +K W DAPV+ + GK VR+PGF + +++ + + E LLVPYFGA Sbjct: 113 LQDNDPKAQEALDKMRKAWNDAPVNPAYTGKKVRIPGFAIPIEQSEKGVDELLLVPYFGA 172 Query: 191 CIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSYSMKAVSVEPY 250 CIH PPPPANQIIHV+ ++ V M A W+ G L + S +G ++Y + A ++PY Sbjct: 173 CIHTPPPPANQIIHVKLSEPQPAVGAMQAYWVWGELTASKFSSELGDAAYLLNATGIQPY 232