BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0092.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776538.1| GntR family transcription regulator protein ... 509 e-142 ref|YP_003981615.1| GntR family transcriptional regulator [Achro... 311 6e-83 ref|ZP_07265514.1| transcriptional regulator GntR [Pseudomonas s... 309 3e-82 gb|EGH27761.1| transcriptional regulator GntR [Pseudomonas syrin... 308 4e-82 dbj|BAF32783.1| transcriptional regulator of GntR family [Pseudo... 308 5e-82 gb|EGH58389.1| transcriptional regulator GntR [Pseudomonas syrin... 307 8e-82 ref|ZP_04586965.1| GntR family transcriptional regulator [Pseudo... 307 8e-82 ref|NP_794303.1| GntR family transcriptional regulator [Pseudomo... 307 1e-81 ref|YP_276371.1| GntR family transcriptional regulator [Pseudomo... 307 1e-81 ref|ZP_06689961.1| GntR family transcriptional regulator [Achrom... 307 1e-81 >ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64630.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 253/255 (99%), Positives = 254/255 (99%) Query: 1 MDVSDTPTPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 MDVSDTP PLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV Sbjct: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 Query: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA Sbjct: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 Query: 121 GLAAARRTDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 GLAAARRT+EQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG Sbjct: 121 GLAAARRTEEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 Query: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL Sbjct: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 Query: 241 RRAQQEAESGSASAA 255 RRAQQEAESGSASAA Sbjct: 241 RRAQQEAESGSASAA 255 >ref|YP_003981615.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP18900.1| bacterial regulatory protein, GntR family protein 61 [Achromobacter xylosoxidans A8] Length = 242 Score = 311 bits (797), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 154/241 (63%), Positives = 190/241 (78%), Gaps = 3/241 (1%) Query: 4 SDTPTPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREA 63 +DTP + PRR+P++L+Q +V ++T I G++ PGDKLPTESEIM+ GVSRTVVREA Sbjct: 5 ADTP---VTPRRRPRNLAQGLVESITERIRGGNIRPGDKLPTESEIMRQFGVSRTVVREA 61 Query: 64 ISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLA 123 +SRLQA+GLVET HG+GT+ LE GG+ +DPA I T+RD+L LLELRI LE+E AGLA Sbjct: 62 LSRLQASGLVETHHGVGTYALEPSGGGDFRVDPADIATVRDVLVLLELRICLESEAAGLA 121 Query: 124 AARRTDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGV 183 AARR+ QL E+R ALD F++ GGGDTV PDF+FH IA AT NRYF +++SHLG + Sbjct: 122 AARRSPAQLLEMRRALDAFKSALDGGGDTVTPDFQFHLLIAQATDNRYFADLMSHLGSAI 181 Query: 184 IPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRA 243 IPR RIN+A+ AH+ +A+YL RV EHEDIY AI R DAEAARAAMR HL+NSRERLRRA Sbjct: 182 IPRTRINSAKFAHEDRAAYLARVNLEHEDIYGAIQRQDAEAARAAMRTHLSNSRERLRRA 241 Query: 244 Q 244 Q Sbjct: 242 Q 242 >ref|ZP_07265514.1| transcriptional regulator GntR [Pseudomonas syringae pv. syringae 642] Length = 249 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 155/245 (63%), Positives = 188/245 (76%) Query: 8 TPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRL 67 + L R RRK +SL+QE+V L+ I +G L GDKLPTES IM+ QGVSRTVVREAISRL Sbjct: 5 SALPRARRKHRSLAQELVTELSERIRSGQLKRGDKLPTESAIMEEQGVSRTVVREAISRL 64 Query: 68 QAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARR 127 QA+GLVETRHGIGTFVL+ IDPATI T+RD+LA+LELRISLE E+AGLAA RR Sbjct: 65 QASGLVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAILELRISLEVESAGLAAQRR 124 Query: 128 TDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRK 187 +DEQL +R ALD + D V DF+FH IA +TGNRYF +I++HLG +IPR Sbjct: 125 SDEQLAAMRSALDALNESAAHATDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRT 184 Query: 188 RINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEA 247 R+N+A LAHD Q +Y+DR+ REHE+I++AIAR D++AARAAMR HLTNSRERLR A +EA Sbjct: 185 RLNSARLAHDDQQNYMDRLSREHEEIFDAIARQDSDAARAAMRLHLTNSRERLRHAHEEA 244 Query: 248 ESGSA 252 ES A Sbjct: 245 ESQRA 249 >gb|EGH27761.1| transcriptional regulator GntR [Pseudomonas syringae pv. japonica str. M301072PT] gb|EGH55764.1| transcriptional regulator GntR [Pseudomonas syringae Cit 7] gb|EGH79142.1| transcriptional regulator GntR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 249 Score = 308 bits (789), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 155/245 (63%), Positives = 187/245 (76%) Query: 8 TPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRL 67 + L R RRK +SL+QE+V L+ I +G L GDKLPTES IM+ QGVSRTVVREAISRL Sbjct: 5 SALPRARRKHRSLAQELVTELSERIRSGQLKRGDKLPTESAIMEEQGVSRTVVREAISRL 64 Query: 68 QAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARR 127 QA+GLVETRHGIGTFVL+ IDPATI T+RD+LA+LELRISLE E+AGLAA RR Sbjct: 65 QASGLVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAILELRISLEVESAGLAAQRR 124 Query: 128 TDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRK 187 +DEQL +R ALD + D V DF+FH IA +TGNRYF +I++HLG +IPR Sbjct: 125 SDEQLAAMRSALDALNESAAHATDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRT 184 Query: 188 RINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEA 247 R+N+A LAHD Q Y+DR+ REHE+I++AIAR D++AARAAMR HLTNSRERLR A +EA Sbjct: 185 RLNSARLAHDDQQHYMDRLSREHEEIFDAIARQDSDAARAAMRLHLTNSRERLRHAHEEA 244 Query: 248 ESGSA 252 ES A Sbjct: 245 ESQRA 249 >dbj|BAF32783.1| transcriptional regulator of GntR family [Pseudomonas syringae pv. actinidiae] Length = 249 Score = 308 bits (789), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 155/241 (64%), Positives = 185/241 (76%) Query: 12 RPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAG 71 R RRK +SL+QE+V L+ I +G L GDKLPTES IM+ QGVSRTVVREAISRLQA+G Sbjct: 9 RARRKHRSLAQELVTELSERIRSGQLKRGDKLPTESAIMEEQGVSRTVVREAISRLQASG 68 Query: 72 LVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTDEQ 131 LVETRHGIGTFVL+ IDPATI T+RD+LA+LELRISLE E+AGLAA RR+DEQ Sbjct: 69 LVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAILELRISLEVESAGLAAQRRSDEQ 128 Query: 132 LQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINT 191 L +R ALD + D V DF+FH IA +TGNRYF +I++HLG +IPR R+N+ Sbjct: 129 LAAMRAALDALNESAAHATDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRTRLNS 188 Query: 192 AELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEAESGS 251 A LAHD Q Y+DR+ REHE+I+EAIAR D++AARAAMR HLTNSRERLR A +EAES Sbjct: 189 ARLAHDDQQHYMDRLSREHEEIFEAIARQDSDAARAAMRLHLTNSRERLRHAHEEAESQR 248 Query: 252 A 252 A Sbjct: 249 A 249 >gb|EGH58389.1| transcriptional regulator GntR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 249 Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 155/245 (63%), Positives = 187/245 (76%) Query: 8 TPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRL 67 + L R RRK +SL+QE+V L+ I +G L GDKLPTES IM+ QGVSRTVVREAISRL Sbjct: 5 SALPRARRKHRSLAQELVTELSERIRSGQLKRGDKLPTESAIMEEQGVSRTVVREAISRL 64 Query: 68 QAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARR 127 QA+GLVETRHGIGTFVL+ IDPATI T+RD+LA+LELRISLE E+AGLAA RR Sbjct: 65 QASGLVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAILELRISLEVESAGLAAQRR 124 Query: 128 TDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRK 187 +DEQL +R ALD + D V DF+FH IA +TGNRYF +I++HLG +IPR Sbjct: 125 SDEQLAAMRAALDALNESAAHATDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRT 184 Query: 188 RINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEA 247 R+N+A LAHD Q Y+DR+ REHE+I++AIAR D++AARAAMR HLTNSRERLR A +EA Sbjct: 185 RLNSARLAHDDQQHYMDRLSREHEEIFDAIARQDSDAARAAMRLHLTNSRERLRHAHEEA 244 Query: 248 ESGSA 252 ES A Sbjct: 245 ESQRA 249 >ref|ZP_04586965.1| GntR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] ref|ZP_07006425.1| Predicted D-glucarate or D-galactorate regulator, GntR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EFH98108.1| Predicted D-glucarate or D-galactorate regulator, GntR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EGI01413.1| GntR family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 249 Score = 307 bits (787), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 154/241 (63%), Positives = 185/241 (76%) Query: 12 RPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAG 71 R RRK +SL+QE+V L+ I +G L GDKLPTES IM+ QGVSRTVVREAISRLQA+G Sbjct: 9 RARRKHRSLAQELVTELSERIRSGQLKRGDKLPTESAIMEEQGVSRTVVREAISRLQASG 68 Query: 72 LVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTDEQ 131 LVETRHGIGTFVL+ IDPATI T+RD+LA+LELRISLE E+AGLAA RR+DEQ Sbjct: 69 LVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAILELRISLEVESAGLAAQRRSDEQ 128 Query: 132 LQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINT 191 L +R ALD + D V DF+FH IA +TGNRYF +I++HLG +IPR R+N+ Sbjct: 129 LAAMRSALDALNESAAHATDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRTRLNS 188 Query: 192 AELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEAESGS 251 A LAHD Q Y+DR+ REHE+I++AIAR D++AARAAMR HLTNSRERLR A +EAES Sbjct: 189 ARLAHDDQQHYMDRLSREHEEIFDAIARQDSDAARAAMRLHLTNSRERLRHAHEEAESQR 248 Query: 252 A 252 A Sbjct: 249 A 249 >ref|NP_794303.1| GntR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] ref|ZP_03394860.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] gb|AAO57998.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000] gb|EEB62103.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] Length = 249 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 154/241 (63%), Positives = 185/241 (76%) Query: 12 RPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAG 71 R RRK +SL+QE+V L+ I +G L GDKLPTES IM+ QGVSRTVVREAISRLQA+G Sbjct: 9 RARRKHRSLAQELVTELSERIRSGQLKRGDKLPTESAIMEEQGVSRTVVREAISRLQASG 68 Query: 72 LVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTDEQ 131 LVETRHGIGTFVL+ IDPATI T+RD+LA+LELRISLE E+AGLAA RR+DEQ Sbjct: 69 LVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAILELRISLEVESAGLAAQRRSDEQ 128 Query: 132 LQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINT 191 L +R ALD + D V DF+FH IA +TGNRYF +I++HLG +IPR R+N+ Sbjct: 129 LAAMRAALDALNESAAHATDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRTRLNS 188 Query: 192 AELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEAESGS 251 A LAHD Q Y+DR+ REHE+I++AIAR D++AARAAMR HLTNSRERLR A +EAES Sbjct: 189 ARLAHDDQQHYMDRLSREHEEIFDAIARQDSDAARAAMRLHLTNSRERLRHAHEEAESQR 248 Query: 252 A 252 A Sbjct: 249 A 249 >ref|YP_276371.1| GntR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gb|AAZ33887.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 249 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 153/238 (64%), Positives = 184/238 (77%) Query: 12 RPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAG 71 R RRK +SL+QE+V L+ I +G L GDKLPTES IM+ QGVSRTVVREAISRLQA+G Sbjct: 9 RARRKHRSLAQELVTELSERIRSGQLKRGDKLPTESAIMEEQGVSRTVVREAISRLQASG 68 Query: 72 LVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTDEQ 131 LVETRHGIGTFVL+ IDPATI T+RD+LA+LELRISLE E+AGLAA RR+DEQ Sbjct: 69 LVETRHGIGTFVLDTPSPSGFRIDPATIVTLRDVLAILELRISLEVESAGLAAQRRSDEQ 128 Query: 132 LQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINT 191 L +R ALD + D V DF+FH IA +TGNRYF +I++HLG +IPR R+N+ Sbjct: 129 LAAMRSALDALNESAAHATDAVASDFQFHLQIALSTGNRYFTDIMTHLGTSIIPRTRLNS 188 Query: 192 AELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQQEAES 249 A LAHD Q Y+DR+ REHE+I++AIAR D++AARAAMR HLTNSRERLR A +EAES Sbjct: 189 ARLAHDDQQHYMDRLSREHEEIFDAIARQDSDAARAAMRLHLTNSRERLRHAHEEAES 246 >ref|ZP_06689961.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF73207.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 285 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 147/237 (62%), Positives = 189/237 (79%), Gaps = 1/237 (0%) Query: 8 TPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRL 67 TP+L P+R+P++L+Q +V +++ I +G + PGDKLPTESEIM+ GVSRTVVREA+SRL Sbjct: 50 TPVL-PQRRPRNLAQGLVESISERIRSGEIRPGDKLPTESEIMRQFGVSRTVVREALSRL 108 Query: 68 QAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARR 127 QA+GLVET HG+GT+ LE + +DPA I T+RD+L LLELRI LE+E AGLAA RR Sbjct: 109 QASGLVETHHGVGTYALEPSGSVDFRVDPADIATVRDVLVLLELRICLESEAAGLAAIRR 168 Query: 128 TDEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRK 187 ++ QLQE+R ALDLF++ + GGDT+ PDF+FH +A +T NRYF +++SHLG +IPR Sbjct: 169 SEVQLQEMRRALDLFKSALESGGDTITPDFQFHLLVAQSTNNRYFADLMSHLGSAIIPRT 228 Query: 188 RINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQ 244 RIN+A+ AH+ +A+YL RV EHEDIY AI R DAEAARAAMR HL+NSRERLRRAQ Sbjct: 229 RINSAKFAHEDRAAYLARVNLEHEDIYSAIMRQDAEAARAAMRTHLSNSRERLRRAQ 285