BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0059.p         (188 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspiril...   203   8e-51
ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotener...    75   7e-12

>ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64598.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  203 bits (517), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 113/192 (58%), Positives = 140/192 (72%), Gaps = 6/192 (3%)

Query: 1   MKKLIGGVLLASALCSVGATASAAQINGTQALTFNNSSTTSYFGSEFGAGTTGKSFLENF 60
           MKKLIG +LLASA   + +TASAA +  T++L + ++  TS F + +G GTTG +FLENF
Sbjct: 1   MKKLIGSLLLASAFIGMASTASAADLERTRSLIWTDA--TSTFNARYGEGTTGLTFLENF 58

Query: 61  TFSYSSPFT-VSSAVISIALDGISRLNLNSLTLSGNGGTWTGVKTTVGSAQVFTLRTDGL 119
           TF+  +  + VSSAV+SIALDG+SRL ++S TLSGNG T TG     G  Q F+LRTDGL
Sbjct: 59  TFTVDAVGSAVSSAVVSIALDGLSRLGIDSFTLSGNGRTITGTPLLEGDTQTFSLRTDGL 118

Query: 120 SSGNYTLSVGGLVTGATGGSFGGNISIAAVPEASTVAMMLGGLALVGFAAYRRRRTEGN- 178
           S+G YTLSV G + G+ GGSF GNIS+A VPEAST AMMLGGL ++GFAAYRRRR  G  
Sbjct: 119 STGLYTLSVAGTILGSEGGSFAGNISVAPVPEASTTAMMLGGLGIIGFAAYRRRRKAGED 178

Query: 179 --AQAQDRLMPA 188
              Q  D+LMPA
Sbjct: 179 APQQRNDQLMPA 190


>ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotenera mobilis JLW8]
 gb|ACT48685.1| protein of unknown function DUF1555 [Methylotenera mobilis JLW8]
          Length = 162

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 24/177 (13%)

Query: 3   KLIGGVLLASALCSVGATASAAQINGTQALTFNNSSTTSYFGSEFGAGTTGK-SFLENFT 61
           KL+  +L+ +A+         A ++  QA T+N  + +S + +EFG+ +  K SF +   
Sbjct: 2   KLVKQLLIGAAIF--------AAVSNAQAATYNLGTLSSDY-TEFGSYSVAKGSFSDTIN 52

Query: 62  FSYS----SPFTVSSAVISIALDGISRLNLNSLTLS-GNGGTWTGVKTTVGSAQVFTLRT 116
           FS +    + F V S  + +    I+RL++  LTLS   G T  G+  T  SA       
Sbjct: 53  FSLAGTSDTDFGVGSIFVKVG--KITRLDITGLTLSLFKGTTDLGLSGTDFSATA----- 105

Query: 117 DGLSSGNYTLSVGGLVTGATGGSFGGNISIAAVPEASTVAMMLGGLALVGFAAYRRR 173
             L +G+Y L V G  TG  GGS+ G I+++ VPEA T AMML GL L+GF A RRR
Sbjct: 106 --LGAGDYHLLVTGNATGTLGGSYAGGINVSPVPEADTYAMMLAGLGLMGFVARRRR 160