BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0051.p (121 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776498.1| hypothetical protein Hsero_3106 [Herbaspiril... 236 8e-61 ref|YP_002231782.1| putative cobaltochelatase [Burkholderia ceno... 154 4e-36 ref|YP_774408.1| cobalamin (vitamin B12) biosynthesis CbiX prote... 152 1e-35 ref|ZP_04940790.1| hypothetical protein BCPG_02267 [Burkholderia... 152 2e-35 ref|YP_621734.1| cobalamin (vitamin B12) biosynthesis CbiX prote... 152 2e-35 ref|YP_370038.1| cobalamin (vitamin B12) biosynthesis CbiX prote... 152 2e-35 ref|ZP_02888743.1| cobalamin (vitamin B12) biosynthesis CbiX pro... 150 6e-35 ref|ZP_02905942.1| cobalamin (vitamin B12) biosynthesis CbiX pro... 148 3e-34 ref|ZP_04944981.1| hypothetical protein BDAG_00855 [Burkholderia... 147 5e-34 ref|YP_001900240.1| cobalamin (vitamin B12) biosynthesis CbiX pr... 145 1e-33 >ref|YP_003776498.1| hypothetical protein Hsero_3106 [Herbaspirillum seropedicae SmR1] gb|ADJ64590.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 120/121 (99%), Positives = 120/121 (99%) Query: 1 MQSLILFAHGARDPAWAAPFERLRALTRAAMPQASVELAFLELMQPDLPSVVAQQVAAGS 60 MQSLILFAHGARDPAWAAPFERLRALTRAAMPQASVELAFLELMQPDLPSVVAQQVAAGS Sbjct: 1 MQSLILFAHGARDPAWAAPFERLRALTRAAMPQASVELAFLELMQPDLPSVVAQQVAAGS 60 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCVAAG 120 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQ EIRTVPAVGEDEAVLQAIAAYCVAAG Sbjct: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQAEIRTVPAVGEDEAVLQAIAAYCVAAG 120 Query: 121 S 121 S Sbjct: 121 S 121 >ref|YP_002231782.1| putative cobaltochelatase [Burkholderia cenocepacia J2315] emb|CAR52980.1| putative cobaltochelatase [Burkholderia cenocepacia J2315] Length = 127 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 77/118 (65%), Positives = 84/118 (71%), Gaps = 1/118 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRAA-MPQASVELAFLELMQPDLPSVVAQQVAAGS 60 ++LF HGARDP WA PFERL A R A P A V LAFLELM P L VA QVAAG Sbjct: 4 HGIVLFGHGARDPRWAEPFERLAARLRGAGSPAAQVSLAFLELMTPSLGDAVAAQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCVA 118 RITV+PVF GQGGHVRRDLPQL++ R AHP VEIR AVGED+ VL A+A YCV Sbjct: 64 TRITVVPVFFGQGGHVRRDLPQLVDACRAAHPGVEIRCATAVGEDDGVLDAVARYCVG 121 >ref|YP_774408.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia ambifaria AMMD] gb|ABI88074.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia ambifaria AMMD] Length = 127 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/117 (64%), Positives = 84/117 (71%), Gaps = 1/117 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRAA-MPQASVELAFLELMQPDLPSVVAQQVAAGS 60 ++LF HGARDP WA PFERL A R + P V LAFLELM P L + VA QVAAG Sbjct: 4 HGIVLFGHGARDPRWAEPFERLAARLRGSGAPAPHVSLAFLELMTPSLDTAVAAQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 RITV+PVF GQGGHVRRDLPQL++ R AHP VEIR AVGED+ VL AIA YC+ Sbjct: 64 TRITVVPVFFGQGGHVRRDLPQLVDACRAAHPNVEIRCATAVGEDDGVLDAIARYCI 120 >ref|ZP_04940790.1| hypothetical protein BCPG_02267 [Burkholderia cenocepacia PC184] gb|EAY63961.1| hypothetical protein BCPG_02267 [Burkholderia cenocepacia PC184] Length = 127 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/117 (64%), Positives = 84/117 (71%), Gaps = 1/117 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRAAMPQAS-VELAFLELMQPDLPSVVAQQVAAGS 60 ++LF HGARDP WA PFERL A R A A+ V LAFLELM P L VA QVAAG Sbjct: 4 HGIVLFGHGARDPRWAEPFERLAARLRGAGSSATHVSLAFLELMTPSLGEAVAAQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 RITV+PVF GQGGHVRRDLPQL++ R AHP VEIR AVGED+ VL A+A YC+ Sbjct: 64 ARITVVPVFFGQGGHVRRDLPQLVDACRAAHPGVEIRCATAVGEDDGVLDAVARYCI 120 >ref|YP_621734.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia cenocepacia AU 1054] ref|YP_836112.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia cenocepacia HI2424] ref|YP_001765757.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia cenocepacia MC0-3] gb|ABF76761.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia cenocepacia AU 1054] gb|ABK09219.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia cenocepacia HI2424] gb|ACA91635.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia cenocepacia MC0-3] Length = 127 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/117 (64%), Positives = 83/117 (70%), Gaps = 1/117 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRAA-MPQASVELAFLELMQPDLPSVVAQQVAAGS 60 ++LF HGARDP WA PFERL A R A P V LAFLELM P L VA QVAAG Sbjct: 4 HGIVLFGHGARDPRWAEPFERLAARLRGAGSPATHVSLAFLELMTPSLGEAVAAQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 RITV+PVF GQGGHVRRDLPQL++ R AHP VEIR AVGED+ VL A+A YC+ Sbjct: 64 ARITVVPVFFGQGGHVRRDLPQLVDACRAAHPGVEIRCATAVGEDDGVLDAVARYCI 120 >ref|YP_370038.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia sp. 383] gb|ABB09394.1| Cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia sp. 383] Length = 127 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 75/117 (64%), Positives = 83/117 (70%), Gaps = 1/117 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRAA-MPQASVELAFLELMQPDLPSVVAQQVAAGS 60 ++LF HGARDP WA PFERL A R A P A V LAFLELM P L +A QVAAG Sbjct: 4 HGIVLFGHGARDPRWAEPFERLAARLRGAPSPAAHVSLAFLELMTPSLGDAIAAQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 ITV+PVF GQGGHVRRDLPQL++ R AHP VEIR AVGED+ VL AIA YC+ Sbjct: 64 SHITVVPVFFGQGGHVRRDLPQLVDACRAAHPGVEIRCATAVGEDDGVLDAIALYCI 120 >ref|ZP_02888743.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia ambifaria IOP40-10] gb|EDT05643.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia ambifaria IOP40-10] Length = 127 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 74/117 (63%), Positives = 82/117 (70%), Gaps = 1/117 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRA-AMPQASVELAFLELMQPDLPSVVAQQVAAGS 60 ++LF HGARDP WA PFERL A R P V LAFLELM P L + VA QVAAG Sbjct: 4 HGIVLFGHGARDPRWAEPFERLAARLRGNGAPAPQVSLAFLELMTPSLDTAVAAQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 RITV+PVF GQGGHVRRDLPQL++ R AHP VEI AVGED+ VL AIA YC+ Sbjct: 64 TRITVVPVFFGQGGHVRRDLPQLVDACRAAHPNVEIHCATAVGEDDGVLDAIARYCI 120 >ref|ZP_02905942.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia ambifaria MEX-5] gb|EDT42895.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia ambifaria MEX-5] Length = 127 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/117 (62%), Positives = 83/117 (70%), Gaps = 1/117 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTR-AAMPQASVELAFLELMQPDLPSVVAQQVAAGS 60 ++LF HGARDP WA PFERL A R ++ P V LAFLELM P L + VA QVAAG Sbjct: 4 HGIVLFGHGARDPRWAEPFERLAARLRGSSAPAPHVSLAFLELMTPSLDTAVAAQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 RITV+PVF GQGGHVRRDLPQL++ R AHP V I AVGED+ VL AIA YC+ Sbjct: 64 TRITVVPVFFGQGGHVRRDLPQLVDACRAAHPNVVIHCATAVGEDDGVLDAIARYCI 120 >ref|ZP_04944981.1| hypothetical protein BDAG_00855 [Burkholderia dolosa AUO158] gb|EAY68152.1| hypothetical protein BDAG_00855 [Burkholderia dolosa AUO158] Length = 129 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 73/117 (62%), Positives = 84/117 (71%), Gaps = 1/117 (0%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRAA-MPQASVELAFLELMQPDLPSVVAQQVAAGS 60 Q ++LF HGARDP WA PFERL R A P V +AFLELM P L + VA QVAAG Sbjct: 4 QGIVLFGHGARDPRWAEPFERLAERLRGAGAPAPLVSVAFLELMTPSLDAAVASQVAAGC 63 Query: 61 QRITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 RIT++PVF GQGGHVRRDLPQL++ R AHP +EIR AVGED+ VL AIA YC+ Sbjct: 64 TRITIVPVFFGQGGHVRRDLPQLVDACRAAHPGIEIRCATAVGEDDRVLDAIARYCL 120 >ref|YP_001900240.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Ralstonia pickettii 12J] ref|ZP_07676267.1| sirohydrochlorin cobaltochelatase [Ralstonia sp. 5_7_47FAA] gb|ACD27808.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Ralstonia pickettii 12J] gb|EFP65605.1| sirohydrochlorin cobaltochelatase [Ralstonia sp. 5_7_47FAA] Length = 123 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 69/116 (59%), Positives = 81/116 (69%) Query: 2 QSLILFAHGARDPAWAAPFERLRALTRAAMPQASVELAFLELMQPDLPSVVAQQVAAGSQ 61 ++L+LFAHGARD W PF+RLR A P LAFLELM PDLP +A A G+Q Sbjct: 4 RALVLFAHGARDARWREPFDRLRERLAAQQPDVDTRLAFLELMAPDLPGTIADLAANGTQ 63 Query: 62 RITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQVEIRTVPAVGEDEAVLQAIAAYCV 117 IT++PVF GQGGH+RRDLP L+ Q QAHP + IR AVGED+AVL AIA YCV Sbjct: 64 SITIVPVFFGQGGHLRRDLPALVAQCTQAHPALSIRCADAVGEDDAVLDAIAGYCV 119