BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0019.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776469.1| RNA polymerase sigma-70 factor, ECF subfamil... 382 e-104 ref|YP_836026.1| ECF subfamily RNA polymerase sigma-24 factor [B... 268 4e-70 ref|ZP_04940871.1| Sigma-70 region 2 [Burkholderia cenocepacia P... 264 6e-69 ref|YP_001765671.1| ECF subfamily RNA polymerase sigma-24 factor... 264 6e-69 ref|YP_621647.1| ECF subfamily RNA polymerase sigma-24 factor [B... 264 6e-69 ref|ZP_02910584.1| RNA polymerase, sigma-24 subunit, ECF subfami... 259 2e-67 ref|ZP_02883566.1| RNA polymerase, sigma-24 subunit, ECF subfami... 259 2e-67 ref|YP_366334.1| sigma-24 (FecI-like) [Burkholderia sp. 383] >gi... 257 5e-67 ref|YP_003608392.1| RNA polymerase, sigma-24 subunit, ECF subfam... 256 9e-67 ref|YP_004359755.1| RNA polymerase, sigma-24 subunit, ECF subfam... 255 2e-66 >ref|YP_003776469.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64561.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/195 (98%), Positives = 193/195 (98%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 MQPISLSSPMSDQDREITATVMRERSRLGGFIRR ADAGEAEDILQEVFYEFVQAYRLP Sbjct: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE Sbjct: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL Sbjct: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 Query: 181 HLRERLQAVYDELEM 195 HLRERLQAVYDELEM Sbjct: 181 HLRERLQAVYDELEM 195 >ref|YP_836026.1| ECF subfamily RNA polymerase sigma-24 factor [Burkholderia cenocepacia HI2424] gb|ABK09133.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia cenocepacia HI2424] Length = 193 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 137/194 (70%), Positives = 155/194 (79%), Gaps = 2/194 (1%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 M+P S PM+D DR+ITATVMRER+RLG FIRR D +AED+LQ+V +EFVQAYRLP Sbjct: 1 MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 PIEQ SAWLFR ARNRIIDRFRKKKE+PL + +E D AD +RLDLALP+ GPE Sbjct: 61 APIEQASAWLFRTARNRIIDRFRKKKEQPLTDLLGVE--DEADSEYRLDLALPSHDAGPE 118 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 A YAR L+ ALQ AL ELP QREVFIAHEL+GLSFKEMAA SG +LNTLLARKRYAVL Sbjct: 119 ALYARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAAQSGVTLNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELE 194 HLR RLQ +YDEL+ Sbjct: 179 HLRARLQPIYDELD 192 >ref|ZP_04940871.1| Sigma-70 region 2 [Burkholderia cenocepacia PC184] gb|EAY64042.1| Sigma-70 region 2 [Burkholderia cenocepacia PC184] Length = 193 Score = 264 bits (674), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 136/194 (70%), Positives = 154/194 (79%), Gaps = 2/194 (1%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 M+P S M+D DR+ITATVMRER+RLG FIRR D +AED+LQ+V +EFVQAYRLP Sbjct: 1 MEPPPTSQTMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 PIEQ SAWLFR ARNRIIDRFRKKKE+PL + +E D AD +RLDLALPA GPE Sbjct: 61 APIEQASAWLFRAARNRIIDRFRKKKEQPLTDLLGVE--DEADSEYRLDLALPAHDAGPE 118 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 A YAR L+ ALQ+AL ELP QREVFIAHEL+G SFKEMAA SG +LNTLLARKRYAVL Sbjct: 119 ALYARTLLLKALQDALDELPANQREVFIAHELEGRSFKEMAAQSGVTLNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELE 194 HLR RLQ +YDEL+ Sbjct: 179 HLRARLQPIYDELD 192 >ref|YP_001765671.1| ECF subfamily RNA polymerase sigma-24 factor [Burkholderia cenocepacia MC0-3] gb|ACA91549.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia cenocepacia MC0-3] Length = 193 Score = 264 bits (674), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 136/194 (70%), Positives = 154/194 (79%), Gaps = 2/194 (1%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 M+P S M+D DR+ITATVMRER+RLG FIRR D +AED+LQ+V +EFVQAYRLP Sbjct: 1 MEPPPTSQTMTDPDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 PIEQ SAWLFR ARNRIIDRFRKKKE+PL + +E D AD +RLDLALPA GPE Sbjct: 61 APIEQASAWLFRTARNRIIDRFRKKKEQPLTDLLGVE--DEADSEYRLDLALPAHDAGPE 118 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 A YAR L+ ALQ+AL ELP QREVFIAHEL+G SFKEMAA SG +LNTLLARKRYAVL Sbjct: 119 ALYARTLLLKALQDALDELPANQREVFIAHELEGRSFKEMAAQSGVTLNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELE 194 HLR RLQ +YDEL+ Sbjct: 179 HLRARLQPIYDELD 192 >ref|YP_621647.1| ECF subfamily RNA polymerase sigma-24 factor [Burkholderia cenocepacia AU 1054] gb|ABF76674.1| RNA polymerase, sigma-24 subunit, RpoE [Burkholderia cenocepacia AU 1054] Length = 193 Score = 264 bits (674), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 136/194 (70%), Positives = 154/194 (79%), Gaps = 2/194 (1%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 M+P S PM+D DR+ITATVMRER+RLG FIRR D +AED+LQ+V +EFVQAYRLP Sbjct: 1 MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 PIEQ SA LFR ARNRIIDRFRKKKE+PL + +E D AD +RLDLALP+ GPE Sbjct: 61 APIEQASARLFRTARNRIIDRFRKKKEQPLTDLLGVE--DEADSEYRLDLALPSHDAGPE 118 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 A YAR L+ ALQ AL ELP QREVFIAHEL+GLSFKEMAA SG +LNTLLARKRYAVL Sbjct: 119 ALYARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAAQSGVTLNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELE 194 HLR RLQ +YDEL+ Sbjct: 179 HLRARLQPIYDELD 192 >ref|ZP_02910584.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia ambifaria MEX-5] gb|EDT38287.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia ambifaria MEX-5] Length = 184 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 132/186 (70%), Positives = 151/186 (81%), Gaps = 2/186 (1%) Query: 10 MSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLPEPIEQVSAW 69 M+D DR+ITATVMRER+RLG FIRR D +AED+LQ+V +EFVQAYRLP PIEQ SAW Sbjct: 1 MTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLPAPIEQASAW 60 Query: 70 LFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPEAAYARAALI 129 LFR ARNRIIDRFRKKKE+PL + D + D AD +RLDLALPA GPEA YAR L+ Sbjct: 61 LFRTARNRIIDRFRKKKEQPLTDLPDAD--DEADSEYRLDLALPAHDAGPEALYARTLLL 118 Query: 130 DALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVLHLRERLQAV 189 ALQ+AL ELP QREVFIAHEL+G SFKEMAA SG +LNTLLARKRYAV+HLR RLQ + Sbjct: 119 KALQDALDELPANQREVFIAHELEGRSFKEMAAQSGVTLNTLLARKRYAVVHLRARLQPI 178 Query: 190 YDELEM 195 YDEL++ Sbjct: 179 YDELDI 184 >ref|ZP_02883566.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] gb|EDT10998.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] Length = 193 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 133/195 (68%), Positives = 154/195 (78%), Gaps = 2/195 (1%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 M+P S PM+D+D +ITATV+RER+RL FIRR D +AEDILQ+VF+EFVQAYRLP Sbjct: 1 MEPPPTSQPMTDRDSDITATVVRERTRLVNFIRRRIRDPDDAEDILQDVFHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 PIEQ SAWLFR ARNRIIDRFRKK+E+PLP+ E D A +RLDLALPA GPE Sbjct: 61 APIEQASAWLFRAARNRIIDRFRKKREQPLPDP--FETDDDAGSEYRLDLALPAHDAGPE 118 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 A YARA L+ ALQ+AL ELP QR+VFIAHEL+G SFK+M A SG LNTLLARKRYAVL Sbjct: 119 ALYARALLLKALQDALDELPPNQRDVFIAHELEGRSFKDMVAQSGVPLNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELEM 195 HLR RLQ +YDEL++ Sbjct: 179 HLRARLQVIYDELDI 193 >ref|YP_366334.1| sigma-24 (FecI-like) [Burkholderia sp. 383] gb|ABB05690.1| sigma-24 (FecI-like) [Burkholderia sp. 383] Length = 194 Score = 257 bits (657), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 132/194 (68%), Positives = 155/194 (79%), Gaps = 2/194 (1%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 M+ S M+D DR+ITATVMRER+RL FIRR D +AEDILQ+VF+EFVQAYRLP Sbjct: 1 MESPPTSHMMTDPDRDITATVMRERTRLVKFIRRRIRDPDDAEDILQDVFHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 PIEQVSAWLFR ARNRI+DRFRKKKE+PL + +++ D A+ +RLDLALPA GPE Sbjct: 61 APIEQVSAWLFRAARNRIVDRFRKKKEQPLADLSEVD--DDANSEYRLDLALPAHDAGPE 118 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 A YAR ++ ALQ+AL ELP QR+VFIAHEL+G SFKEMAA SG +LNTLLARKRYAVL Sbjct: 119 ALYARTLVLKALQDALDELPTNQRDVFIAHELEGQSFKEMAAQSGVALNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELE 194 HLR RLQ +YDEL+ Sbjct: 179 HLRARLQPIYDELD 192 >ref|YP_003608392.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. CCGE1002] gb|ADG18881.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. CCGE1002] Length = 193 Score = 256 bits (655), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 133/195 (68%), Positives = 154/195 (78%), Gaps = 2/195 (1%) Query: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLP 60 M+P S PM+D+D +I ATV+RER+RL FIRR D +AEDILQ+VF+EFVQAYRLP Sbjct: 1 MEPPPTSQPMTDRDSDIAATVVRERTRLVNFIRRRIRDPDDAEDILQDVFHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 PIEQ SAWLFR ARNRIIDRFRKKKE+PL + E + A +RLDLALPA GPE Sbjct: 61 APIEQASAWLFRAARNRIIDRFRKKKEQPLTDL--FEADEDASSEYRLDLALPAHEAGPE 118 Query: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 A YARA L+ ALQ+AL ELP QREVFIAHEL+G SFK+M A SG +LNTLLARKRYAVL Sbjct: 119 ALYARAVLLKALQDALDELPPNQREVFIAHELEGRSFKDMVAESGVALNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELEM 195 HLR RLQA+YDEL++ Sbjct: 179 HLRARLQAIYDELDI 193 >ref|YP_004359755.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia gladioli BSR3] gb|AEA59799.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia gladioli BSR3] Length = 192 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 129/187 (68%), Positives = 154/187 (82%), Gaps = 3/187 (1%) Query: 9 PMSDQDREITATVMRERSRLGGFIRRPQADAGEAEDILQEVFYEFVQAYRLPEPIEQVSA 68 PM+D+DR+++AT+ RER++LG FIRR D +AEDILQ+VF++FVQAYRLP PIEQ SA Sbjct: 9 PMTDRDRDMSATISRERTKLGNFIRRRVRDPSDAEDILQDVFHDFVQAYRLPAPIEQASA 68 Query: 69 WLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPEAAYARAAL 128 WLFR ARNRIIDRFRKKKE+PL E ++Q + DD +RLDLALPA GPEA YAR + Sbjct: 69 WLFRAARNRIIDRFRKKKEQPLAEL--VDQGEDGDD-YRLDLALPAHDAGPEALYARGVV 125 Query: 129 IDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVLHLRERLQA 188 + ALQ+AL ELP QREVFIAHEL+GLSFK MAA SG ++NTLLARKRYAVLHLR RLQA Sbjct: 126 LKALQQALDELPANQREVFIAHELEGLSFKAMAADSGVAVNTLLARKRYAVLHLRARLQA 185 Query: 189 VYDELEM 195 YDEL++ Sbjct: 186 TYDELDI 192