BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0011.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776460.1| GntR family transcription regulator protein ... 545 e-153 ref|YP_261465.1| GntR family transcriptional regulator [Pseudomo... 250 2e-64 ref|YP_004417116.1| GntR family transcriptional regulator [Pusil... 221 1e-55 ref|YP_004418622.1| GntR family transcriptional regulator [Pusil... 220 2e-55 ref|YP_551878.1| GntR family transcriptional regulator [Polaromo... 211 1e-52 ref|YP_293103.1| GntR family transcriptional regulator [Ralstoni... 209 4e-52 ref|ZP_08403145.1| GntR family transcriptional regulator [Rubriv... 202 4e-50 ref|YP_295642.1| GntR family transcriptional regulator [Ralstoni... 202 5e-50 ref|YP_004685408.1| GntR family transcriptional regulator [Cupri... 199 6e-49 ref|YP_002005505.1| GntR family transcriptional regulator [Cupri... 197 1e-48 >ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64552.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 278/278 (100%), Positives = 278/278 (100%) Query: 1 MRAMKTSPSSSAAAQAVPPAPGSARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELT 60 MRAMKTSPSSSAAAQAVPPAPGSARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELT Sbjct: 1 MRAMKTSPSSSAAAQAVPPAPGSARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELT 60 Query: 61 ERFSVSRTVIREAISRLKSEGLVGSRRGSGTVVLPANPATPFRLDLDVDDGRDSIQAVLR 120 ERFSVSRTVIREAISRLKSEGLVGSRRGSGTVVLPANPATPFRLDLDVDDGRDSIQAVLR Sbjct: 61 ERFSVSRTVIREAISRLKSEGLVGSRRGSGTVVLPANPATPFRLDLDVDDGRDSIQAVLR 120 Query: 121 VIELRRGVEGEMAALAAQRRTSAQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNAS 180 VIELRRGVEGEMAALAAQRRTSAQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNAS Sbjct: 121 VIELRRGVEGEMAALAAQRRTSAQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNAS 180 Query: 181 HNPLYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAA 240 HNPLYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAA Sbjct: 181 HNPLYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAA 240 Query: 241 LRHMENSAQRLQAADRAFWASAEGQAAARDLARVRDAG 278 LRHMENSAQRLQAADRAFWASAEGQAAARDLARVRDAG Sbjct: 241 LRHMENSAQRLQAADRAFWASAEGQAAARDLARVRDAG 278 >ref|YP_261465.1| GntR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY93628.1| transcriptional regulator, GntR family [Pseudomonas fluorescens Pf-5] Length = 261 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 141/247 (57%), Positives = 170/247 (68%), Gaps = 5/247 (2%) Query: 13 AAQAVPPAPGSARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIRE 72 AA ++ SA+G TLAD VT+ L I +GE P RLP+E L ERF VSRTVIRE Sbjct: 12 AADSLATLKDSAKG--TLADQVTAALKAHIASGEVLPGARLPTEPVLCERFGVSRTVIRE 69 Query: 73 AISRLKSEGLVGSRRGSGTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEM 132 AISRLKS GLV R+GSGTVV F +DLDV R SI+AVLRV ELRRG+EGE Sbjct: 70 AISRLKSAGLVEVRQGSGTVVCEGAHIKAFTIDLDV---RGSIEAVLRVTELRRGIEGEA 126 Query: 133 AALAAQRRTSAQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFL 192 AALAAQR T +Q AI QAL AID A AG+DGV +D AFH +IS A+ NPLY SL +F+ Sbjct: 127 AALAAQRHTPSQLEAIHQALLAIDSAEQAGQDGVEQDLAFHLSISQATGNPLYPSLHEFI 186 Query: 193 SQFLHAAIRVARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQ 252 +QF+ AIR+ R NE R + + VRAEH A+ AI+A D E AR AAL H+ N+ +RL+ Sbjct: 187 AQFIKEAIRITRSNEERRKDLARTVRAEHLAVYRAIAARDVEGARQAALSHIHNAVERLK 246 Query: 253 AADRAFW 259 +AD AFW Sbjct: 247 SADPAFW 253 >ref|YP_004417116.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC20492.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 260 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/241 (58%), Positives = 174/241 (72%), Gaps = 3/241 (1%) Query: 29 TLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRG 88 TLAD VT +L +IR +F +RLPSE + +RF VSRTVIREA+SRLK+EGLV +R+G Sbjct: 17 TLADRVTHILLAEIRENKFPAHSRLPSEAVMAKRFGVSRTVIREAVSRLKAEGLVDTRQG 76 Query: 89 SGTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAI 148 SGT VL N ATPFRLD +DS++AVLRVIELRRGVE EMAALAA+RR++AQ I Sbjct: 77 SGTSVLEPNTATPFRLDART---QDSLKAVLRVIELRRGVEAEMAALAAERRSAAQFARI 133 Query: 149 QQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEA 208 ++A AI +A AGRDGV ED AFH IS A NPLYTSL+ +LS +LH AI V R NEA Sbjct: 134 KKAFNAIKKAERAGRDGVDEDLAFHTEISQACGNPLYTSLLSYLSLYLHTAIVVTRANEA 193 Query: 209 RSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAADRAFWASAEGQAAA 268 + ++F +QV EH A+ +AIS D AARAAAL HME +A RL+A D A W + +AA Sbjct: 194 QRDDFSRQVHEEHTAIMDAISRKDPGAARAAALHHMEGAASRLKAIDAASWTAPMDEAAR 253 Query: 269 R 269 R Sbjct: 254 R 254 >ref|YP_004418622.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC21998.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 262 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/247 (51%), Positives = 164/247 (66%), Gaps = 4/247 (1%) Query: 29 TLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRG 88 TL+D +T +L R+IR+G + +RLP+E +TE + VSRTV+RE +SRLKS GLV +R+G Sbjct: 11 TLSDRLTDMLGREIRSGAYPVNSRLPTEKFMTEEYGVSRTVVREVLSRLKSAGLVETRQG 70 Query: 89 SGTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAI 148 SGTVVL + + FRL DG D + VLR+IELRRG+EGEMAALAA+RR++ I Sbjct: 71 SGTVVLDPSSSDAFRLGRP--DG-DPARGVLRIIELRRGLEGEMAALAAERRSAQDMRRI 127 Query: 149 QQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEA 208 +AL AID A A DGV +D AFH AI+ A+ NP Y L+ L++ L AIRV R NEA Sbjct: 128 NRALAAIDSAVALDGDGVEQDLAFHIAIAQATGNPHYPELLGMLTRALKDAIRVTRGNEA 187 Query: 209 RSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAADRAFWASAEGQAAA 268 R + + VR EH A+ AI A D + ARAAA HM ++A+R+Q D +W A AA Sbjct: 188 RQVQLAEDVRKEHEAIRAAIEAQDIDEARAAAFHHMSSTARRIQNVDPEYWQGASSAAAG 247 Query: 269 RDLARVR 275 R LAR R Sbjct: 248 R-LARTR 253 >ref|YP_551878.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE46980.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 274 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/253 (51%), Positives = 164/253 (64%), Gaps = 7/253 (2%) Query: 29 TLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRG 88 TLAD +T VLA Q+R+G + RLP+E + E F VSRTV+RE ISRLKSEGLV +R+G Sbjct: 18 TLADRLTLVLAEQLRSGVYPVNARLPTERTMAEEFGVSRTVVREVISRLKSEGLVETRQG 77 Query: 89 SGTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAI 148 SGT VL + FRL + + VLR+IELR G+E +MAALAA+RRT+++ I Sbjct: 78 SGTAVLDPQSSAAFRLS---SSENNPAEGVLRIIELRCGIEAQMAALAARRRTASEMAEI 134 Query: 149 QQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEA 208 + AL+ ID A A G DGV ED FH AIS A+ NP YT L+ L++ L AIRV R NEA Sbjct: 135 KHALKMIDRAVANGGDGVKEDLEFHMAISRATRNPHYTDLLGMLTRALKDAIRVTRSNEA 194 Query: 209 RSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAADRAFWASAEGQAAA 268 R +F QVRAEH A++ AI A D EAAR AALRHME++ R++ A+ FW A Sbjct: 195 RRADFTAQVRAEHEAISAAILARDPEAARVAALRHMESTVARIELAEAGFWTGERRDTAQ 254 Query: 269 R----DLARVRDA 277 R DL V DA Sbjct: 255 RLARTDLKTVLDA 267 >ref|YP_293103.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ65246.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 288 Score = 209 bits (532), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 138/274 (50%), Positives = 174/274 (63%), Gaps = 8/274 (2%) Query: 1 MRAMKTSPSSSAAAQAVPPAPGSARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELT 60 M ++ ++ AQA G + + TLAD VT LA QIR G + RLP+E +T Sbjct: 1 MWSITVQSTTENLAQAEQLPTGKSGFEPTLADRVTEHLAGQIRRGMYPVNARLPTEKFMT 60 Query: 61 ERFSVSRTVIREAISRLKSEGLVGSRRGSGTVVLPANPATP--FRLDLDVDDGRDSIQAV 118 E+F VSRTVIREAISRLKSEGLV SR+GSGTVVL NPAT FRL G D V Sbjct: 61 EQFGVSRTVIREAISRLKSEGLVESRQGSGTVVL--NPATAEVFRLG---RGGSDPALGV 115 Query: 119 LRVIELRRGVEGEMAALAAQRRTSAQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISN 178 +R++ELRRG+E EMAALAA+RR+ Q I+ AL ID A AG DGV ED AFH A+S Sbjct: 116 VRILELRRGIEAEMAALAAERRSERQMDDIRSALHEIDSAVRAGGDGVEEDLAFHLAVSR 175 Query: 179 ASHNPLYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARA 238 A+ NP YT L+ L++ L AIR+ R NEAR ++ VR EHA + AI D + AR Sbjct: 176 ATGNPHYTELLGMLTRALRDAIRLTRGNEARRSDLAAHVRTEHAEICAAIETQDPQRARQ 235 Query: 239 AALRHMENSAQRLQAADRAFWASAEGQAAARDLA 272 AA HM N+ +R+ AA+R FW + + + AA+ LA Sbjct: 236 AAFLHMRNTEERILAAERDFW-TGDSRTAAQRLA 268 >ref|ZP_08403145.1| GntR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gb|EGJ11478.1| GntR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 246 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 121/230 (52%), Positives = 149/230 (64%), Gaps = 4/230 (1%) Query: 30 LADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRGS 89 LAD V S L +IR+G A +LP+E L ++F VSRTV+REA+ RLKS GLV SR+GS Sbjct: 3 LADQVASALEAEIRSGGLAAGQKLPTEQALVQQFGVSRTVVREAVQRLKSRGLVDSRQGS 62 Query: 90 GTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAIQ 149 G VL A P D R+ AVL++IELRR +E E+A LAAQRRT AQ AI+ Sbjct: 63 GVYVLAAG-CEPLSFDPTEAASRE---AVLQIIELRRALEAEVAELAAQRRTPAQARAIR 118 Query: 150 QALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEAR 209 ALQAI +A A+G DG ED FH AI A+ NP + +L+QFL RV R NEAR Sbjct: 119 VALQAIADAVASGGDGAVEDVRFHRAIGEAAGNPFLIRTLDYLAQFLQGVTRVTRANEAR 178 Query: 210 SNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRLQAADRAFW 259 EF +QV+ EH A+ +AI AGDA AAR AA +HM N+ RLQ AD +FW Sbjct: 179 HREFAEQVKQEHEAVVQAIEAGDAPAARHAAAQHMNNAMLRLQHADASFW 228 >ref|YP_295642.1| GntR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ60798.1| transcriptional regulator, GntR family [Ralstonia eutropha JMP134] Length = 245 Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 115/222 (51%), Positives = 146/222 (65%), Gaps = 3/222 (1%) Query: 30 LADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRGS 89 L D+V L +I++G FA +LP+E L+E F VSRTVIREAISRLK EG+V SR+GS Sbjct: 10 LTDNVAEQLLDKIQSGAFARGDKLPTEAVLSEEFGVSRTVIREAISRLKYEGVVESRQGS 69 Query: 90 GTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAIQ 149 G V P R+D D G ++ +VL+++ELRR +E E+AA AA+RRT A AI Sbjct: 70 GVFVTEQAGIRPLRIDY-TDTG--TLDSVLQIVELRRAIEAEVAAQAARRRTDATMTAID 126 Query: 150 QALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEAR 209 AL +D A G DGV D AFH AI+ A+ NP + ++FLSQ+L AA RV R NEAR Sbjct: 127 TALARLDAEVAEGGDGVAADVAFHRAIATATGNPYFLKTLEFLSQYLEAATRVTRTNEAR 186 Query: 210 SNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRL 251 +F +QVR EH A+ AI AGDA AAR AA HM N+A+RL Sbjct: 187 RADFTRQVREEHQAIVAAIRAGDALAARNAAQNHMYNAARRL 228 >ref|YP_004685408.1| GntR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI76927.1| transcriptional regulator GntR family [Cupriavidus necator N-1] Length = 244 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 114/222 (51%), Positives = 146/222 (65%), Gaps = 3/222 (1%) Query: 30 LADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRGS 89 L D+V L +I++G FA +LP+E L+E F VSRTV+REAISRLK EG+V SR+GS Sbjct: 10 LTDNVAEQLLDKIQSGAFARGAKLPTEAVLSEEFGVSRTVVREAISRLKYEGVVESRQGS 69 Query: 90 GTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAIQ 149 G V P R+D + G ++++VL+++ELRR +E E+AA AA+RRT A AI Sbjct: 70 GVFVTLQAGIRPLRIDY-TETG--TLESVLQIVELRRAIEAEVAAQAARRRTDASMAAID 126 Query: 150 QALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEAR 209 AL +DE A G DGV ED AFH AI+ A+ NP + + FLSQ+L AA RV R NEAR Sbjct: 127 AALARLDEEVAQGGDGVAEDVAFHRAIAEATGNPYFLKTLAFLSQYLEAATRVTRTNEAR 186 Query: 210 SNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRL 251 +F +QVR EH A+ AI AGD AAR AA HM N+A RL Sbjct: 187 RADFSRQVREEHQAIVAAIRAGDPLAARNAAQNHMYNAAHRL 228 >ref|YP_002005505.1| GntR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ69438.1| putative transcriptional regulator, GntR family [Cupriavidus taiwanensis LMG 19424] Length = 244 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/222 (50%), Positives = 146/222 (65%), Gaps = 3/222 (1%) Query: 30 LADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRGS 89 L D+V L +I++G FA +LP+E L+E F VSRTV+REAISRLK EG+V SR+GS Sbjct: 10 LTDNVAEQLLDKIQSGAFARGDKLPTEAVLSEEFGVSRTVVREAISRLKYEGVVESRQGS 69 Query: 90 GTVVLPANPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQRRTSAQNLAIQ 149 G V P R+D D G ++++VL+++ELRR +E E+AA AA+RR+ A AI Sbjct: 70 GVFVTLQAGIRPLRIDY-TDTG--ALESVLQIVELRRAIEAEVAAQAARRRSDASMAAID 126 Query: 150 QALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEAR 209 AL +D+ A G DGV ED FH AI+ A+ NP + ++FLSQ+L AA RV R NEAR Sbjct: 127 AALARLDDVVAQGGDGVAEDVGFHRAIAEATGNPYFLKTLEFLSQYLEAATRVTRTNEAR 186 Query: 210 SNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRL 251 +F +QVR EH A+ AI AGD AAR AA HM N+A RL Sbjct: 187 RADFSRQVREEHQAIVAAIRAGDPLAARNAAQNHMYNAAHRL 228