BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0006.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776455.1| hypothetical protein Hsero_3059 [Herbaspiril... 354 3e-96 ref|ZP_08870136.1| hypothetical protein AZA_83634 [Azospirillum ... 130 6e-29 ref|YP_484330.1| hypothetical protein RPB_0708 [Rhodopseudomonas... 119 2e-25 ref|YP_567284.1| hypothetical protein RPD_0143 [Rhodopseudomonas... 114 5e-24 ref|YP_001236223.1| hypothetical protein BBta_0012 [Bradyrhizobi... 112 2e-23 ref|ZP_08628092.1| hypothetical protein CSIRO_1162 [Bradyrhizobi... 111 5e-23 ref|NP_767460.1| hypothetical protein bll0820 [Bradyrhizobium ja... 110 9e-23 ref|YP_530263.1| hypothetical protein RPC_0369 [Rhodopseudomonas... 106 1e-21 ref|YP_001202229.1| hypothetical protein BRADO0006 [Bradyrhizobi... 100 7e-20 ref|YP_559235.1| hypothetical protein Bxe_A1774 [Burkholderia xe... 100 7e-20 >ref|YP_003776455.1| hypothetical protein Hsero_3059 [Herbaspirillum seropedicae SmR1] gb|ADJ64547.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 178/178 (100%), Positives = 178/178 (100%) Query: 1 MHASRPPQAEETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWIS 60 MHASRPPQAEETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWIS Sbjct: 1 MHASRPPQAEETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWIS 60 Query: 61 ALMRVRDLLVAPLGLKRAGDHGAPAGFPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGR 120 ALMRVRDLLVAPLGLKRAGDHGAPAGFPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGR Sbjct: 61 ALMRVRDLLVAPLGLKRAGDHGAPAGFPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGR 120 Query: 121 EGSAGPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVARSHPDKPAASMQQ 178 EGSAGPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVARSHPDKPAASMQQ Sbjct: 121 EGSAGPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVARSHPDKPAASMQQ 178 >ref|ZP_08870136.1| hypothetical protein AZA_83634 [Azospirillum amazonense Y2] gb|EGY00272.1| hypothetical protein AZA_83634 [Azospirillum amazonense Y2] Length = 181 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/170 (48%), Positives = 101/170 (59%), Gaps = 25/170 (14%) Query: 10 EETTPAPRHWALLPGARFADSFRIPL----TP-ELAPLDTTEIAARMMAEQPGWISALMR 64 E TPAP WALLPGA+FAD+FR+ L TP ++ PLD A RMM P W+ LM Sbjct: 19 HEVTPAPDTWALLPGAQFADAFRLTLPSTGTPVDVRPLDALTAAQRMMGTSPTWVRRLMA 78 Query: 65 VRDLLVAPLGLK---------RAGDHGAPAGFPLLLAEPARVVMGLDDSHLDFRLCVE-K 114 +R+ +VAPLGLK RAG G FP+L + P RVV+G+ D HLDFR V+ + Sbjct: 79 LRNAIVAPLGLKAPRPPAEASRAGHIGI---FPILSSGPDRVVLGMADKHLDFRAVVDVR 135 Query: 115 LEAGGREGSAGPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGV 164 E GG + +T TTVVRT LG YL IMPFHR + RT+L V Sbjct: 136 QETGGCQ-------VTATTVVRTHNWLGRAYLTLIMPFHRLVVRTMLGQV 178 >ref|YP_484330.1| hypothetical protein RPB_0708 [Rhodopseudomonas palustris HaA2] gb|ABD05419.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 157 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 94/161 (58%), Gaps = 13/161 (8%) Query: 11 ETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLLV 70 E P+ ALLPGA+F D++ +P+ LD + A RM+ PGWI ALMR+R+L+V Sbjct: 5 EIAPSVDREALLPGAQFIDAYCVPIGSR--ALDARQAATRMIEHGPGWIDALMRLRNLVV 62 Query: 71 APLGLKRAGDHGAPAG-----FPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGREGSAG 125 P GLK G+ AG FP+L P R+V G DD HLDFR+ ++ +E G E Sbjct: 63 TPFGLKTPAPGGSAAGDRIGVFPVLDEAPHRIVAGFDDHHLDFRVVID-VEDGPAERR-- 119 Query: 126 PGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVAR 166 + TT+V T LG YLA IMPFHR + R +LQ +AR Sbjct: 120 ---VVATTLVLTHNWLGRTYLATIMPFHRLVVRAMLQQLAR 157 >ref|YP_567284.1| hypothetical protein RPD_0143 [Rhodopseudomonas palustris BisB5] gb|ABE37383.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 157 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 15/163 (9%) Query: 10 EETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLL 69 E+ P ALLPGA+F D++ + + LD E A RM+ P WI LMR+R+++ Sbjct: 4 EQIAPVVDREALLPGAQFIDAYSVTIGDN--ALDAREAATRMVEHGPRWIGTLMRLRNIV 61 Query: 70 VAPLGLKRAGDHGAPAG-----FPLLLAEPARVVMGLDDSHLDFRLCVEKLE-AGGREGS 123 V P GLK G+ G FP+L P R+V G DDSHLDFR+ V+ ++ A GR Sbjct: 62 VTPFGLKTPAPGGSARGDRIGSFPVLSETPTRIVAGFDDSHLDFRIVVDVVDGAAGRR-- 119 Query: 124 AGPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVAR 166 + +T+V T LG YLAAIMPFHR + R +L VA+ Sbjct: 120 -----VIASTLVLTHNRLGRTYLAAIMPFHRLVVRAMLGRVAQ 157 >ref|YP_001236223.1| hypothetical protein BBta_0012 [Bradyrhizobium sp. BTAi1] gb|ABQ32317.1| hypothetical protein BBta_0012 [Bradyrhizobium sp. BTAi1] Length = 159 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 68/163 (41%), Positives = 93/163 (57%), Gaps = 13/163 (7%) Query: 10 EETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLL 69 E TP L A FAD+FRI T E LD A RM+ + P W++AL+++R+LL Sbjct: 4 SEITPDVDRARWLADADFADAFRI--TVEAPALDARMAAERMLGQAPAWMAALVKLRNLL 61 Query: 70 VAPLGLKRAG-DHGAP----AGFPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGREGSA 124 V P GLK +G D P FP++ P R+V+G DD HLDFR+ ++ G Sbjct: 62 VRPFGLKTSGADAQNPRPMIGMFPVVDETPQRIVLGFDDMHLDFRVVIDAASHGK----- 116 Query: 125 GPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVARS 167 +T TT+V+T LG +YL IMPFHR +A+T+L+ VA S Sbjct: 117 -TSQVTATTLVQTHNALGRIYLTIIMPFHRLVAKTMLRQVAAS 158 >ref|ZP_08628092.1| hypothetical protein CSIRO_1162 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09001.1| hypothetical protein CSIRO_1162 [Bradyrhizobiaceae bacterium SG-6C] Length = 143 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 16/151 (10%) Query: 20 ALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLLVAPLGLKR-- 77 ALLPGA+F D FRI + + + + A RM Q GWISALM++R+++V P GLKR Sbjct: 3 ALLPGAQFGDCFRITVDDAI---NARQAAERMFLRQRGWISALMKLRNIMVTPFGLKRPT 59 Query: 78 ---AGDHGAPAGFPLLLAEPARVVMGLDDSHLDFRLCVE-KLEAGGREGSAGPGWLTVTT 133 A + FP++ P R+V G DD HLDFR+ V+ + G+E SA TT Sbjct: 60 HRKALTRESIGPFPVISETPQRLVAGFDDRHLDFRIVVDVSGDVPGQEVSA-------TT 112 Query: 134 VVRTKRLLGSVYLAAIMPFHRRIARTLLQGV 164 +V+T LLG +YL IMPFHR I +L+ + Sbjct: 113 LVKTNNLLGRIYLTIIMPFHRIIVPAMLRNI 143 >ref|NP_767460.1| hypothetical protein bll0820 [Bradyrhizobium japonicum USDA 110] dbj|BAC46085.1| bll0820 [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 93/161 (57%), Gaps = 15/161 (9%) Query: 11 ETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLLV 70 E P LL GA+F D+FR+ + ++ E RM+ P W+ AL+R+R++LV Sbjct: 7 EVPPNVDAGTLLAGAQFVDAFRVEIGA--TAVNAREACVRMVLHGPRWVDALIRLRNILV 64 Query: 71 APLGLKRAGDHGAPAG------FPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGREGSA 124 P GLK +G+ GAPA FP++ P R+V G +DSHLDFRL V+ G+ Sbjct: 65 RPFGLKTSGE-GAPAPYGLIGLFPVVSETPERLVAGFNDSHLDFRLVVDV------AGTE 117 Query: 125 GPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVA 165 +T TT+VRT LLG YLA IMPFH+ + R +++ +A Sbjct: 118 ADRQVTSTTLVRTHNLLGRTYLALIMPFHKFVVRGMMKRIA 158 >ref|YP_530263.1| hypothetical protein RPC_0369 [Rhodopseudomonas palustris BisB18] gb|ABD85944.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 156 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/149 (43%), Positives = 86/149 (57%), Gaps = 14/149 (9%) Query: 20 ALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLLVAPLGLKRAG 79 A+LPGA+F D+F + + P+D + A RMM P W++ALM +RD +V P GLK A Sbjct: 14 AVLPGAQFIDAFAVTVP---GPIDARQAAERMMTRSPPWVTALMTLRDAVVKPFGLKTA- 69 Query: 80 DHGAPAG------FPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGREGSAGPGWLTVTT 133 D A FP+L P R++ G DDSHLDFR+ V + E AG +T TT Sbjct: 70 DSARQATIDRVGMFPVLSETPQRLIAGFDDSHLDFRVVV---DVADTEPDAGV-RVTATT 125 Query: 134 VVRTKRLLGSVYLAAIMPFHRRIARTLLQ 162 +V T LLG YLA I PFHR + R +L+ Sbjct: 126 LVLTHNLLGRTYLATITPFHRLVVRAMLR 154 >ref|YP_001202229.1| hypothetical protein BRADO0006 [Bradyrhizobium sp. ORS 278] emb|CAL73979.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 159 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 13/161 (8%) Query: 10 EETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLL 69 E TP L GA FAD+FRI T + A L+ A RM+ P W++AL+++R+ L Sbjct: 4 SEITPDVDRDRWLAGADFADAFRI--TIDGATLNARSAAERMLGHTPWWMAALLKLRNAL 61 Query: 70 VAPLGLKRAG-DHGAP----AGFPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGREGSA 124 V P GLK +G D P FP++ P ++V+G DD HLDFR+ V+ G Sbjct: 62 VRPFGLKTSGADARRPRPMIGIFPVINETPRQLVLGFDDKHLDFRVLVDVATVGASSQ-- 119 Query: 125 GPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVA 165 +T TT+V+T LG +YL I PFHR + + L+ VA Sbjct: 120 ----VTATTLVQTHNALGRIYLTVITPFHRLVVKATLRQVA 156 >ref|YP_559235.1| hypothetical protein Bxe_A1774 [Burkholderia xenovorans LB400] gb|ABE31183.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 171 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/143 (43%), Positives = 80/143 (55%), Gaps = 10/143 (6%) Query: 25 ARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISALMRVRDLLVAPLGLKRAGDHGAP 84 A FAD+F + L PE A D IA + QP WI+AL+++RDLLV PLGLKRA D A Sbjct: 25 ADFADAFSVDL-PEAASHDAESIARHIFDHQPEWIAALLKLRDLLVRPLGLKRAADLSAA 83 Query: 85 AG-----FPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGREGSAGPGWLTVTTVVRTKR 139 G F + P +V+G DD+HL+FR+ V P + VTT+V R Sbjct: 84 GGDRLHIFRIFGRYPNEIVLGEDDTHLNFRVSVLVQPPSDEH----PRRVIVTTLVFYNR 139 Query: 140 LLGSVYLAAIMPFHRRIARTLLQ 162 LLG Y+A I PFHR + R L+ Sbjct: 140 LLGRAYIALIAPFHRMVVRGSLR 162