BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0004.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776454.1| cytochrome bd-type quinol oxidase subunit 2 ... 752 0.0 ref|YP_004753413.1| cytochrome d ubiquinol oxidase subunit II [C... 536 e-150 ref|YP_004038973.1| cytochrome d ubiquinol oxidase subunit II [M... 473 e-131 ref|YP_003050306.1| cytochrome d ubiquinol oxidase subunit II [M... 472 e-131 ref|ZP_03268415.1| cytochrome d ubiquinol oxidase, subunit II [B... 463 e-128 ref|YP_003603908.1| cytochrome d ubiquinol oxidase, subunit II [... 461 e-128 ref|YP_004030296.1| cytochrome d ubiquinol oxidase subunit II [B... 460 e-127 ref|YP_559110.1| cytochrome bd ubiquinol oxidase, subunit II [Bu... 454 e-125 ref|YP_523611.1| cytochrome d ubiquinol oxidase subunit II [Rhod... 454 e-125 ref|YP_556903.1| cytochrome bd ubiquinol oxidase, subunit II [Bu... 453 e-125 >ref|YP_003776454.1| cytochrome bd-type quinol oxidase subunit 2 [Herbaspirillum seropedicae SmR1] gb|ADJ64546.1| cytochrome bd-type quinol oxidase, subunit 2, protein [Herbaspirillum seropedicae SmR1] Length = 379 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/379 (100%), Positives = 379/379 (100%) Query: 1 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG 60 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG Sbjct: 1 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG 60 Query: 61 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW Sbjct: 61 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120 Query: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM 180 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM Sbjct: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM 180 Query: 181 LLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSA 240 LLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSA Sbjct: 181 LLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT Sbjct: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR Sbjct: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 Query: 361 VVKGKVTARDIHENEHTAY 379 VVKGKVTARDIHENEHTAY Sbjct: 361 VVKGKVTARDIHENEHTAY 379 >ref|YP_004753413.1| cytochrome d ubiquinol oxidase subunit II [Collimonas fungivorans Ter331] gb|AEK62590.1| Cytochrome d ubiquinol oxidase subunit II [Collimonas fungivorans Ter331] Length = 379 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 278/379 (73%), Positives = 316/379 (83%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 +FDYETLK+IWW FVGVL+IGFALTDGFDFGVGMMLPF GK D ERR++IN+IG TWEGN Sbjct: 1 MFDYETLKIIWWGFVGVLLIGFALTDGFDFGVGMMLPFIGKTDGERRVVINSIGSTWEGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTWFITAGGA FAAWPLVY AFSGFY+ALM+LLFSLFFRPVGFDYRSKVAD RWRNAWD Sbjct: 61 QTWFITAGGAIFAAWPLVYGAAFSGFYVALMLLLFSLFFRPVGFDYRSKVADTRWRNAWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WGLF GGFVPPLI GVAFGNL LGVPFHYDDTMRVEYTG+FF LLNPFGLLAGLLSVAML Sbjct: 121 WGLFAGGFVPPLIFGVAFGNLFLGVPFHYDDTMRVEYTGNFFQLLNPFGLLAGLLSVAML 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 LMHGAA+ VKT+ +A+R+R A LVT LF+AGGFWVA + GYRI +MPD N+A Sbjct: 181 LMHGAAYLQVKTDDVIAQRARNVAKIAGLVTAALFVAGGFWVAYGIDGYRISAMPDMNTA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 F P AKTV VAGAWFDNYA WP P + VA A+L + A AF++S +SVT Sbjct: 241 FMPTAKTVTTVAGAWFDNYAHWPAIWALPVVAVAAALLCTAFSSANKAMAAFLSSGISVT 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 +ILTAG SLFPF+MPSSLD SSLT+WD+VSSHKTLG+MFW+V+I LP+I++YT WVYR Sbjct: 301 AVILTAGASLFPFIMPSSLDPNSSLTIWDAVSSHKTLGIMFWVVVIMLPIIMLYTTWVYR 360 Query: 361 VVKGKVTARDIHENEHTAY 379 V++GKVT + I +NEHTAY Sbjct: 361 VMRGKVTLKHIEDNEHTAY 379 >ref|YP_004038973.1| cytochrome d ubiquinol oxidase subunit II [Methylovorus sp. MP688] gb|ADQ83737.1| cytochrome d ubiquinol oxidase, subunit II [Methylovorus sp. MP688] Length = 382 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 235/379 (62%), Positives = 294/379 (77%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 I DY+TLKL+WW FVGVL+IGFA+ DGFD GV +LPF GK D ERR++IN++GP WEGN Sbjct: 4 IIDYQTLKLVWWLFVGVLLIGFAIMDGFDMGVTTLLPFLGKTDDERRVIINSVGPVWEGN 63 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTW ITAGGA FAAWPLVYA AFSG Y+AL+++LF+LFFRPVGFDYRSK+ P WRN+WD Sbjct: 64 QTWLITAGGAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRNSWD 123 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 W LF+GGFVP L+ GVAFGNLLLG+PFHYDDT+R YTGSF+ALLNPF LL GL+S+ ML Sbjct: 124 WALFVGGFVPSLVFGVAFGNLLLGLPFHYDDTLRSFYTGSFWALLNPFALLCGLVSLTML 183 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 LMHGA + ++TE V +R+ + + + +LF G W+A + GYR++ +PD N+A Sbjct: 184 LMHGAIYLQLRTEGVVQKRAARAARISGITCAILFALAGLWLAAGIEGYRLLQIPDVNNA 243 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL KTVE VAGAW NY+ +P L P +G AG LA L A + R AF+ S+L++ Sbjct: 244 INPLHKTVEKVAGAWLSNYSTYPWMTLAPTVGFAGIALALLSAAKKWERCAFVFSSLALA 303 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 GIILTAG S+FPF+MPSS D SSLTLWD+VSS KTLG+MF + LIFLPLI++YT WV+R Sbjct: 304 GIILTAGFSMFPFIMPSSTDPVSSLTLWDAVSSKKTLGIMFIVTLIFLPLILIYTSWVFR 363 Query: 361 VVKGKVTARDIHENEHTAY 379 V++GK+T + I +N HTAY Sbjct: 364 VLRGKITVQHIRDNSHTAY 382 >ref|YP_003050306.1| cytochrome d ubiquinol oxidase subunit II [Methylovorus glucosetrophus SIP3-4] gb|ACT49779.1| cytochrome d ubiquinol oxidase, subunit II [Methylovorus glucosetrophus SIP3-4] Length = 382 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 236/379 (62%), Positives = 293/379 (77%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 I DY+TLKL+WW FVGVL+IGFA+ DGFD GV +LPF GK D ERR++IN++GP WEGN Sbjct: 4 IIDYQTLKLVWWLFVGVLLIGFAIMDGFDMGVTTLLPFLGKTDDERRVIINSVGPVWEGN 63 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTW ITAGGA FAAWPLVYA AFSG Y+AL+++LF+LFFRPVGFDYRSK+ P WRN WD Sbjct: 64 QTWLITAGGAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRNGWD 123 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 W LF+GGFVP L+ GVAFGNLLLG+PFHYDDT+R YTGSF+ALLNPF LL GL+S+ ML Sbjct: 124 WALFVGGFVPSLVFGVAFGNLLLGLPFHYDDTLRSFYTGSFWALLNPFALLCGLVSLTML 183 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQ-MPGYRIVSMPDANSA 240 LMHGA + ++TE V +R+ + + + +LF G W+A + GYR++ +PD NSA Sbjct: 184 LMHGAIYLQLRTEGIVQKRAARAARISGITCAILFALAGLWLAAGIEGYRLLQIPDVNSA 243 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL KTVE VAGAW NY+ +P L P +G AG LA L A + R AF+ S+L++ Sbjct: 244 INPLHKTVEKVAGAWLSNYSTYPWMTLAPTVGFAGIALALLSAAKKWERCAFVFSSLALA 303 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 GIILTAG S+FPF+MPSS D SSLTLWD+VSS KTLG+MF + LIFLPLI++YT WV+R Sbjct: 304 GIILTAGFSMFPFIMPSSTDPVSSLTLWDAVSSKKTLGIMFIVTLIFLPLILIYTSWVFR 363 Query: 361 VVKGKVTARDIHENEHTAY 379 V++GK+T + I +N HTAY Sbjct: 364 VLRGKITVQHIRDNSHTAY 382 >ref|ZP_03268415.1| cytochrome d ubiquinol oxidase, subunit II [Burkholderia sp. H160] gb|EDZ99976.1| cytochrome d ubiquinol oxidase, subunit II [Burkholderia sp. H160] Length = 378 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/377 (60%), Positives = 280/377 (74%), Gaps = 1/377 (0%) Query: 4 DYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGNQT 63 DY LKLIWW +GVL+IGFALTDGFD G ++LPF K D+ERRI++N +G TWEGNQ Sbjct: 2 DYAALKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIAKTDSERRIVVNTVGATWEGNQV 61 Query: 64 WFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWDWG 123 WF+TAGGA FAAWPL YA +FSGFY A++++LF+LFFRPVGFDYR K DPRWRNAWDWG Sbjct: 62 WFVTAGGAMFAAWPLAYAASFSGFYFAMLLVLFALFFRPVGFDYRGKREDPRWRNAWDWG 121 Query: 124 LFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAMLLM 183 LFIGGFVP L+ G+AFGNLL GVPF +D +RV Y GSFF LLNPF LL GL+SV+ML Sbjct: 122 LFIGGFVPALVFGIAFGNLLQGVPFSFDTDLRVTYHGSFFGLLNPFALLTGLVSVSMLAA 181 Query: 184 HGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQM-PGYRIVSMPDANSAFT 242 HGAAF KT+ V ER+ K + AAL TV+LF+ G VA M GY+IV MP ++ Sbjct: 182 HGAAFVKWKTDDVVHERASKALRLAALCTVVLFLVAGALVATMIGGYQIVDMPPLDAVSN 241 Query: 243 PLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTGI 302 PL KTV G W NYA +P T + P GV G VLA LA R AF++++L + G+ Sbjct: 242 PLMKTVIGAPGLWLVNYALYPWTVIAPLAGVVGGVLAVALARSRFETTAFLSTSLMIVGV 301 Query: 303 ILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRVV 362 ILTAG S+FPF+MPSSLD +SSLT+WD+ SS TL +M + V++FLP I++YTGWVYRV+ Sbjct: 302 ILTAGFSMFPFIMPSSLDGRSSLTMWDATSSQMTLEIMLFAVIVFLPTILLYTGWVYRVM 361 Query: 363 KGKVTARDIHENEHTAY 379 +GKVTA I EN H+ Y Sbjct: 362 RGKVTAAAIEENHHSMY 378 >ref|YP_003603908.1| cytochrome d ubiquinol oxidase, subunit II [Burkholderia sp. CCGE1002] gb|ADG14397.1| cytochrome d ubiquinol oxidase, subunit II [Burkholderia sp. CCGE1002] Length = 378 Score = 461 bits (1186), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/377 (60%), Positives = 280/377 (74%), Gaps = 1/377 (0%) Query: 4 DYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGNQT 63 DY LKLIWW +GVL+IGFALTDGFD G ++LPF K D+ERRI++N +G TWEGNQ Sbjct: 2 DYAALKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIAKTDSERRIVVNTVGATWEGNQV 61 Query: 64 WFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWDWG 123 WF+TAGGA FAAWPL YA +FSGFY A++++LF+LFFRPVGFDYR K DPRWRNAWDWG Sbjct: 62 WFVTAGGAMFAAWPLAYAASFSGFYFAMLLVLFALFFRPVGFDYRGKREDPRWRNAWDWG 121 Query: 124 LFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAMLLM 183 LFIGGFVP L+ G+AFGNLL GVPF +D +RV Y GSFF LLNPF LL GL+SV+ML Sbjct: 122 LFIGGFVPALVFGIAFGNLLQGVPFSFDTDLRVTYHGSFFGLLNPFALLTGLVSVSMLAA 181 Query: 184 HGAAFAFVKTEAAVAERSRKTIIGAALVTVLLF-IAGGFWVAQMPGYRIVSMPDANSAFT 242 HGA+F KT+ V ER+ K + AAL V+LF IAG F + GY+IV MP ++ Sbjct: 182 HGASFVKWKTDGVVHERASKALRLAALCAVVLFLIAGAFVATMIGGYQIVDMPPLDAVSN 241 Query: 243 PLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTGI 302 PL KTV G W +NYA +P + P G G VLA LLA R AF++++L V G+ Sbjct: 242 PLMKTVIGAPGLWLNNYALYPWMAVAPLAGFVGGVLAMLLARSRFEATAFLSTSLMVVGV 301 Query: 303 ILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRVV 362 ILTAG S+FPF+MPSSLD +SSLT+WD+ SS TL +M + V++FLP+I++YTGWVYRV+ Sbjct: 302 ILTAGFSMFPFIMPSSLDGRSSLTMWDATSSQMTLEIMLFAVILFLPIILLYTGWVYRVM 361 Query: 363 KGKVTARDIHENEHTAY 379 +GKVTA I EN H+ Y Sbjct: 362 RGKVTAAAIKENHHSMY 378 >ref|YP_004030296.1| cytochrome d ubiquinol oxidase subunit II [Burkholderia rhizoxinica HKI 454] emb|CBW76152.1| Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) [Burkholderia rhizoxinica HKI 454] Length = 386 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 224/379 (59%), Positives = 280/379 (73%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 +FDY TLK+IWW +GVL++GFALTDGFD GVG +LPF GK DTERR++INAIGPTWEGN Sbjct: 8 MFDYPTLKVIWWVLIGVLLLGFALTDGFDMGVGALLPFIGKTDTERRVIINAIGPTWEGN 67 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q W ITAGGA FAAWPLVYA +FSGFY A++++LF+LF RPVGF+YR+K DPRWR +WD Sbjct: 68 QVWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFMRPVGFEYRAKRDDPRWRTSWD 127 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 W LF G +P L+ GVAFGNLL GVPF +DD +RV Y G FFALLNPF +L G +SV ML Sbjct: 128 WALFAGSAIPALVFGVAFGNLLQGVPFRFDDELRVSYHGGFFALLNPFAVLCGAVSVGML 187 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVA-QMPGYRIVSMPDANSA 240 + HGAAF +KTE A+A R+ + A+L+TV+LFI G +VA ++ G+ I ++ Sbjct: 188 VAHGAAFLRIKTEGAIARRASHVLRIASLITVVLFIMAGIFVATRITGFEITRAAPLDAL 247 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 PL K V G W NY +P L PALG+ VLA LA R L FI + L VT Sbjct: 248 ANPLLKRVAAAPGLWMANYIAYPWMMLAPALGIVAGVLALALASSRFTMLCFIMTGLLVT 307 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 G+ILTAG S+FPF+MPSSLD SSLTLWDS SSH+TLG+M +V++F+PLI++YT WVYR Sbjct: 308 GVILTAGFSMFPFIMPSSLDPASSLTLWDSTSSHRTLGIMLIVVIVFVPLIMLYTSWVYR 367 Query: 361 VVKGKVTARDIHENEHTAY 379 V++GKVT + + N H+ Y Sbjct: 368 VMRGKVTEQGVQSNTHSMY 386 >ref|YP_559110.1| cytochrome bd ubiquinol oxidase, subunit II [Burkholderia xenovorans LB400] gb|ABE31058.1| cytochrome bd quinol oxidase subunit 2 apoprotein [Burkholderia xenovorans LB400] Length = 378 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/377 (59%), Positives = 277/377 (73%), Gaps = 1/377 (0%) Query: 4 DYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGNQT 63 DY TLKLIWW +GVL+IGFALTDGFD G ++LPF GK D ERRI++N +G TWEGNQ Sbjct: 2 DYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQV 61 Query: 64 WFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWDWG 123 W ITAGGA FAAWPLVYA +FSGFY A++++LFSLFFRPVGFDYRSK DPRWR+AWDW Sbjct: 62 WLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWA 121 Query: 124 LFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAMLLM 183 LF+GGFVP L+ GVAFGNLL GVPF +D +RV Y G FFALLNPF +L GL+SV+ML Sbjct: 122 LFVGGFVPSLVFGVAFGNLLQGVPFSFDTDLRVTYHGGFFALLNPFAVLCGLVSVSMLAA 181 Query: 184 HGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQM-PGYRIVSMPDANSAFT 242 HGAAF +K + VAER+ + A+ V+LF+ G +A M GY++V ++ Sbjct: 182 HGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVAN 241 Query: 243 PLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTGI 302 PL K+V G W NYA +P P G+AG VLA LLA R + AF+A++L + G+ Sbjct: 242 PLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIVGV 301 Query: 303 ILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRVV 362 ILTAG S+FPF+MPSSLD +SSLT+WDS SS TL +M V++FLPLI++YT WVYRV+ Sbjct: 302 ILTAGFSMFPFIMPSSLDGRSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVM 361 Query: 363 KGKVTARDIHENEHTAY 379 +GKVTA + EN HT Y Sbjct: 362 RGKVTAAALEENRHTMY 378 >ref|YP_523611.1| cytochrome d ubiquinol oxidase subunit II [Rhodoferax ferrireducens T118] gb|ABD70080.1| cytochrome d ubiquinol oxidase, subunit II [Rhodoferax ferrireducens T118] Length = 378 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/378 (58%), Positives = 281/378 (74%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGN 61 +FDY TLK+IWW +GVL+IGFA+ DG D GVG +LPF G++D ERR++IN +GP WEGN Sbjct: 1 MFDYSTLKIIWWLLIGVLLIGFAIMDGHDMGVGTLLPFVGRSDMERRVIINTVGPHWEGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWD 121 Q WFIT GGA FAAWPLVYA AFSGFY A++V+L++LFFRPVGFDYRSK+ + WR+AWD Sbjct: 61 QVWFITGGGALFAAWPLVYAAAFSGFYWAMLVVLWALFFRPVGFDYRSKIHNASWRSAWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WGLF+GG VPPLI GVAFGNLLLGVPF +D + Y+GSF+ LLNPF LLAG+LS AM+ Sbjct: 121 WGLFVGGAVPPLIFGVAFGNLLLGVPFQFDTYLVSTYSGSFWQLLNPFALLAGVLSSAMI 180 Query: 182 LMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSAF 241 MHG + +TE + R+ K +GAALV VL F+A G W+ + GYRI S+ + + Sbjct: 181 TMHGGVYLAHRTEGVIQARAIKGAMGAALVMVLAFVAAGVWLQFLDGYRITSIINPGALP 240 Query: 242 TPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTG 301 P+ KTV AGAW NY P+ L P +GV GA+LA L +R AF+ SAL++ G Sbjct: 241 DPMNKTVVREAGAWMANYGHQPLLWLLPVIGVLGALLAVLQLRLRRTLTAFVCSALALLG 300 Query: 302 IILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRV 361 +I TAG S+FPF+MPSS +SLT+WDSVSSH TLG+M + LIF+PLI++YT W YRV Sbjct: 301 VIGTAGASMFPFIMPSSSMPGASLTVWDSVSSHLTLGIMLGVTLIFMPLIVLYTSWAYRV 360 Query: 362 VKGKVTARDIHENEHTAY 379 ++GKVTA + ENEH AY Sbjct: 361 MRGKVTAAYVKENEHGAY 378 >ref|YP_556903.1| cytochrome bd ubiquinol oxidase, subunit II [Burkholderia xenovorans LB400] gb|ABE28851.1| cytochrome bd quinol oxidase subunit 2 apoprotein [Burkholderia xenovorans LB400] Length = 378 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 223/377 (59%), Positives = 277/377 (73%), Gaps = 1/377 (0%) Query: 4 DYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEGNQT 63 DY TLKLIWW +GVL+IGFALTDGFD G ++LPF GK D ERRI++N +G TWEGNQ Sbjct: 2 DYATLKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIGKTDAERRIVVNTVGATWEGNQV 61 Query: 64 WFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAWDWG 123 W ITAGGA FAAWPLVYA +FSGFY A++++LFSLFFRPVGFDYRSK DPRWR+AWDW Sbjct: 62 WLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFSLFFRPVGFDYRSKREDPRWRSAWDWA 121 Query: 124 LFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAMLLM 183 LF+GGFVP L+ GVAFGNLL GVPF +D +RV Y G FFALLNPF +L GL+SV+ML Sbjct: 122 LFVGGFVPALVFGVAFGNLLQGVPFSFDTDLRVTYHGGFFALLNPFAVLCGLVSVSMLAA 181 Query: 184 HGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQM-PGYRIVSMPDANSAFT 242 HGAAF +K + VAER+ + A+ V+LF+ G +A M GY++V ++ Sbjct: 182 HGAAFVKMKADDIVAERASLALRIASFAAVVLFLIAGALIATMIGGYQLVDAAPLDTVAN 241 Query: 243 PLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVTGI 302 PL K+V G W NYA +P P G+AG VLA LLA R + AF+A++L + G+ Sbjct: 242 PLLKSVTGAPGLWLANYATYPWMVAAPVAGLAGGVLATLLARSRFEKSAFLATSLMIIGV 301 Query: 303 ILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRVV 362 ILTAG S+FPF+MPSSLD +SSLT+WDS SS TL +M V++FLPLI++YT WVYRV+ Sbjct: 302 ILTAGFSMFPFIMPSSLDGRSSLTVWDSTSSRMTLQIMLIAVIVFLPLILIYTSWVYRVM 361 Query: 363 KGKVTARDIHENEHTAY 379 +GKVTA + EN H+ Y Sbjct: 362 RGKVTAAALEENHHSMY 378