BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0003.p (541 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 ... 1090 0.0 ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Co... 907 0.0 ref|YP_003050307.1| cytochrome bd ubiquinol oxidase subunit I [M... 808 0.0 ref|ZP_02361570.1| cytochrome d ubiquinol oxidase, subunit I [Bu... 806 0.0 ref|ZP_03268416.1| cytochrome bd ubiquinol oxidase subunit I [Bu... 805 0.0 ref|ZP_02354381.1| cytochrome d ubiquinol oxidase, subunit I [Bu... 805 0.0 ref|YP_556904.1| putative cytochrome bd ubiquinol oxidase,subuni... 805 0.0 ref|ZP_02462237.1| cytochrome d ubiquinol oxidase, subunit I [Bu... 804 0.0 ref|ZP_02372614.1| cytochrome d ubiquinol oxidase, subunit I [Bu... 804 0.0 ref|YP_441012.1| cytochrome d ubiquinol oxidase subunit I [Burkh... 804 0.0 >ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 [Herbaspirillum seropedicae SmR1] gb|ADJ64545.1| cytochrome bd-type quinol oxidase, subunit 1, protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/541 (99%), Positives = 540/541 (99%) Query: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK Sbjct: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 Query: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG Sbjct: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120 Query: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN Sbjct: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL Sbjct: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 Query: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT Sbjct: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 Query: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL Sbjct: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360 Query: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA Sbjct: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420 Query: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG Sbjct: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480 Query: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESAPGDVLPPPLNPSANAGSH 540 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKES PGDVLPPPLNPSANAG+H Sbjct: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESGPGDVLPPPLNPSANAGNH 540 Query: 541 P 541 P Sbjct: 541 P 541 >ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] gb|AEK62589.1| Cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] Length = 528 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/516 (83%), Positives = 479/516 (92%) Query: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 M+PIDEVV+LSRLQFA TA++HFLFVPLTLGL+WILVIMESVYVMTG+ IYKDMTRFWGK Sbjct: 1 MIPIDEVVALSRLQFAATAMFHFLFVPLTLGLAWILVIMESVYVMTGSPIYKDMTRFWGK 60 Query: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120 LFGINFAMG+ATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEG+MAFFLESTFVGLFFFG Sbjct: 61 LFGINFAMGIATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMMAFFLESTFVGLFFFG 120 Query: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 WD+LSR QHL++T LVALGS+LSALWILIANGWMNNPVGAEFN+ETMRMEL S+ DVIFN Sbjct: 121 WDRLSRVQHLLITFLVALGSSLSALWILIANGWMNNPVGAEFNYETMRMELTSIVDVIFN 180 Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 PVAQVKFVHT++AGYV ASMFVLG+SA+YLLK RDTAFALRSFA+AAGFGLA+TLSVIVL Sbjct: 181 PVAQVKFVHTLSAGYVAASMFVLGISAYYLLKGRDTAFALRSFAIAAGFGLASTLSVIVL 240 Query: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 GDESGYTAGEVNKVK+AA+EAEW T PAPAG+T+FG PN+KE+RTD+A KIPYVLGLI T Sbjct: 241 GDESGYTAGEVNKVKMAAMEAEWHTEPAPAGITVFGWPNEKEQRTDFAFKIPYVLGLIGT 300 Query: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360 RS D Q+ GI DLKKEHE RIRNGMLAYAALT+LK GDKSPEA A FDKLK DLGYGLLL Sbjct: 301 RSVDKQITGIHDLKKEHEVRIRNGMLAYAALTRLKGGDKSPEAVAAFDKLKDDLGYGLLL 360 Query: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420 KKYT KVVDATPEQI+MAVNDT PK+AP+FWSFR MV LG LFLFIFS SF+FL +K+LA Sbjct: 361 KKYTPKVVDATPEQIAMAVNDTFPKIAPMFWSFRLMVGLGILFLFIFSCSFYFLIRKKLA 420 Query: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480 QRWLLRLAV SIPLPW+A ELGW++AEYGRQPWTI+G+LPTHLSAS+LQPGSLYFSLAG Sbjct: 421 KQRWLLRLAVYSIPLPWVAIELGWLLAEYGRQPWTISGVLPTHLSASTLQPGSLYFSLAG 480 Query: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWEN 516 F+ FY FL ++EMILMVKYAR GPSSLHTG+Y+WE Sbjct: 481 FLGFYGFLFIIEMILMVKYARRGPSSLHTGKYHWER 516 >ref|YP_003050307.1| cytochrome bd ubiquinol oxidase subunit I [Methylovorus glucosetrophus SIP3-4] gb|ACT49780.1| cytochrome bd ubiquinol oxidase subunit I [Methylovorus glucosetrophus SIP3-4] Length = 522 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/522 (75%), Positives = 449/522 (86%) Query: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 M+P EVV LSRLQF TALYHFLFVPLTLGLSW+LVIMESVYVMTG Q+Y+DMT+FWGK Sbjct: 1 MLPSAEVVDLSRLQFGATALYHFLFVPLTLGLSWMLVIMESVYVMTGKQVYRDMTKFWGK 60 Query: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120 LFGINFAMGV TGIT+EFQFGTNW+YYSHYVGDIFG PLAIEGLMAFFLESTFVGLFFFG Sbjct: 61 LFGINFAMGVTTGITMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFG 120 Query: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 WD+LS+KQHL+VT LVALGSNLSALWILIANGWM NPVGAEFNFETMRME+ + ++FN Sbjct: 121 WDRLSKKQHLVVTFLVALGSNLSALWILIANGWMQNPVGAEFNFETMRMEMTNFAHLLFN 180 Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 PVAQVKFVHTVAAGY TA+MFVLG+S+WYLLK RDTAFALRS AVA+GFGLA+ LSVI+L Sbjct: 181 PVAQVKFVHTVAAGYTTAAMFVLGISSWYLLKKRDTAFALRSIAVASGFGLASILSVIIL 240 Query: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 GDESGY GEV KVKLAA+EAEW T P PA TLFGLPN KEERTDYAVKIPYV+G+IAT Sbjct: 241 GDESGYATGEVQKVKLAAVEAEWHTEPPPASFTLFGLPNQKEERTDYAVKIPYVMGIIAT 300 Query: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360 RS D V G+ D+K+E+E RIRNGM+AYAAL KLKSGD S EA A F+ +K DLG+GLLL Sbjct: 301 RSLDEPVAGLVDIKRENEDRIRNGMVAYAALQKLKSGDTSAEAVAAFNAVKDDLGHGLLL 360 Query: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420 KKYT VVDAT EQ+ +A DTIP V LFWSFR MV LG L LF+ A+F++ AK+ +A Sbjct: 361 KKYTPNVVDATDEQVKLAAADTIPNVFVLFWSFRVMVGLGVLMLFMLGAAFYYSAKRTIA 420 Query: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480 + WLLRLAV +IP+PWIAAE+GW+VAE GRQPWTI+GILPTHLS SSL G LYFS+AG Sbjct: 421 SKTWLLRLAVAAIPVPWIAAEMGWVVAEMGRQPWTISGILPTHLSTSSLNTGELYFSIAG 480 Query: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESA 522 F+ FYT LL++E+ LM KYARLGPSSLHTG+Y++E + +A Sbjct: 481 FLGFYTLLLLIELFLMFKYARLGPSSLHTGRYHFEVSSRAAA 522 >ref|ZP_02361570.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia oklahomensis C6786] Length = 531 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/518 (75%), Positives = 442/518 (85%), Gaps = 2/518 (0%) Query: 5 DEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGI 64 EVV LSRLQF +TALYHFLFVPLTLG+SW+LVIME+VYVMTG Q+YKDMT+FWGKLFGI Sbjct: 4 SEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGI 63 Query: 65 NFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFGWDKL 124 NFAMGV TGITLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFFLESTFVGLFFFGW++L Sbjct: 64 NFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRL 123 Query: 125 SRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQ 184 S+ QHLIVT LVALGSNLSALWIL+ANGWMNNPVGAEFN++TMRMEL ++ DVIFNPVAQ Sbjct: 124 SKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVIFNPVAQ 183 Query: 185 VKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDES 244 VKFVHTV+AGYVTA+MFVLGVSAWYLLK RDT FALRSFAVAAGFGLA+TL VIVLGDES Sbjct: 184 VKFVHTVSAGYVTAAMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLGDES 243 Query: 245 GYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSAD 304 GYT GEV K+KLAAIE+EW+T PAPA TL GLPN EERTDYA+KIPY LGLI TRS D Sbjct: 244 GYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIVTRSID 303 Query: 305 TQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLLKKYT 364 V+G+++L K E I++GM+AY AL KLK+GD S E +A FD+ K+ LGYGL+LK++T Sbjct: 304 EPVIGLRELAKRSEEHIQSGMVAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFT 363 Query: 365 NKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAP--Q 422 V DATP+QI A TIP VAP+F+SFR MV LGFLFL F A+FWF A++QL + Sbjct: 364 QNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRQLLQDNR 423 Query: 423 RWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFI 482 RW LR AV +IPLPW+AAE GW+VAE GRQPWTIAGILPTHLSASSL LY SLAGFI Sbjct: 424 RWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTSTDLYLSLAGFI 483 Query: 483 LFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKE 520 LFYT L ++E+ LM KYARLGPSSLHTG+Y+ E ++ Sbjct: 484 LFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAKRQ 521 >ref|ZP_03268416.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia sp. H160] gb|EDZ99977.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia sp. H160] Length = 530 Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/536 (72%), Positives = 456/536 (85%), Gaps = 8/536 (1%) Query: 2 VPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKL 61 +P+ EVV+LSRLQFA+TALYHFLFVPLTLGL+W+LVIMESVYVMTG QIYKDMT+FWGKL Sbjct: 1 MPVSEVVALSRLQFAITALYHFLFVPLTLGLAWLLVIMESVYVMTGKQIYKDMTQFWGKL 60 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFGW 121 FGINFAMGVATG+TLEFQFGTNW+YYSHYVGDIFG PLA+EGLMAFFLESTFVGLFFFGW Sbjct: 61 FGINFAMGVATGLTLEFQFGTNWAYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW 120 Query: 122 DKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 ++LS+ QHLIVT VALGSNLSALWIL+ANGWMNNPVGA+FN++TMRMEL S+ VIFNP Sbjct: 121 NRLSKVQHLIVTFCVALGSNLSALWILVANGWMNNPVGAQFNYQTMRMELDSIGSVIFNP 180 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLG 241 VAQVKFVHTV+AGYVTA+MFVLGVS+WYLLK RDT FALRSFA+AAGFGLA+ L VIVLG Sbjct: 181 VAQVKFVHTVSAGYVTAAMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASALCVIVLG 240 Query: 242 DESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATR 301 DESGY GEV +VKLAAIE+EW+T PAPA T+FG+PN KE+RTDYA+++PY LG+IATR Sbjct: 241 DESGYRTGEVQQVKLAAIESEWETAPAPAPFTVFGIPNQKEQRTDYAIRVPYALGIIATR 300 Query: 302 SADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLLK 361 S D V+G++DL E+E RI+NGMLA++AL +LK+GD S EA AEFDK K+DLGYGLLLK Sbjct: 301 SLDEPVVGLRDLIAENEGRIKNGMLAFSALQRLKAGDSSDEAHAEFDKYKEDLGYGLLLK 360 Query: 362 KYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQ--L 419 ++T V DATP+QI+ A TIP V PLF+SFR MV LG LFL F +FWF A++ L Sbjct: 361 QFTPNVTDATPDQIAEAAKSTIPPVLPLFFSFRMMVGLGLLFLATFVLAFWFCAQRTLLL 420 Query: 420 APQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLA 479 +RW LR AV +IPLPW+AAE GWIVAE GRQPW+IAGILPT+L+AS+L P LY S+ Sbjct: 421 EKRRWFLRWAVAAIPLPWLAAEFGWIVAEMGRQPWSIAGILPTNLAASTLTPRDLYLSIG 480 Query: 480 GFILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESAPGDVLPPPLNPSA 535 GF+LFYT L ++E++LM KYARLGPSSLHTG+Y+ EN V PP NP+A Sbjct: 481 GFVLFYTGLFIIEIMLMFKYARLGPSSLHTGRYHHENDQP------VTPPLSNPAA 530 >ref|ZP_02354381.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia oklahomensis EO147] Length = 531 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/518 (75%), Positives = 442/518 (85%), Gaps = 2/518 (0%) Query: 5 DEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGI 64 EVV LSRLQF +TALYHFLFVPLTLG+SW+LVIME+VYVMTG Q+YKDMT+FWGKLFGI Sbjct: 4 SEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGI 63 Query: 65 NFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFGWDKL 124 NFAMGV TGITLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFFLESTFVGLFFFGW++L Sbjct: 64 NFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRL 123 Query: 125 SRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQ 184 S+ QHLIVT LVALGSNLSALWIL+ANGWMNNPVGAEFN++TMRMEL ++ DVIFNPVAQ Sbjct: 124 SKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVIFNPVAQ 183 Query: 185 VKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDES 244 VKFVHTV+AGYVTA+MFVLGVSAWYLLK RDT FALRSFAVAAGFGLA+TL VIVLGDES Sbjct: 184 VKFVHTVSAGYVTAAMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLGDES 243 Query: 245 GYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSAD 304 GYT GEV K+KLAAIE+EW+T PAPA TL GLPN EERTDYA+KIPY LGLI TRS D Sbjct: 244 GYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIVTRSFD 303 Query: 305 TQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLLKKYT 364 V+G+++L K E I++GM+AY AL KLK+GD S E +A FD+ K+ LGYGL+LK++T Sbjct: 304 EPVIGLRELAKRSEEHIQSGMVAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFT 363 Query: 365 NKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAP--Q 422 V DATP+QI A TIP VAP+F+SFR MV LGFLFL F A+FWF A++QL + Sbjct: 364 QNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRQLLQDNR 423 Query: 423 RWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFI 482 RW LR AV +IPLPW+AAE GW+VAE GRQPWTIAGILPTHLSASSL LY SLAGFI Sbjct: 424 RWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTSTDLYLSLAGFI 483 Query: 483 LFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKE 520 LFYT L ++E+ LM KYARLGPSSLHTG+Y+ E ++ Sbjct: 484 LFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAERQ 521 >ref|YP_556904.1| putative cytochrome bd ubiquinol oxidase,subunit I [Burkholderia xenovorans LB400] ref|YP_559109.1| cytochrome bd ubiquinol oxidase, subunit I [Burkholderia xenovorans LB400] gb|ABE28852.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Burkholderia xenovorans LB400] gb|ABE31057.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Burkholderia xenovorans LB400] Length = 535 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/536 (73%), Positives = 451/536 (84%), Gaps = 3/536 (0%) Query: 2 VPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKL 61 +P+ EVV LSRLQFA+TALYHFLFVPLTLGLSW+LVIMESVYVMTG QIYKDMT+FWGKL Sbjct: 1 MPVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKL 60 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFGW 121 FGINFAMGV TG+TLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFFLESTFVGLFFFGW Sbjct: 61 FGINFAMGVTTGLTLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW 120 Query: 122 DKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 +LSR QH+IVT LVALGSNLSALWIL+ANGWMNNPVGA FN++TMRMEL S+ V+FNP Sbjct: 121 KRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGATFNYQTMRMELDSIFSVLFNP 180 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLG 241 VAQVKFVHTV+AGYVTASMFVLGVS+WYLLK RDT FALRSFA+AAGFGLA+TL VIVLG Sbjct: 181 VAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG 240 Query: 242 DESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATR 301 DESGY GEV +VKLAAIE+EW+T PAPA T+ G+PN KEERTDYA+++PY LGLIATR Sbjct: 241 DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATR 300 Query: 302 SADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLLK 361 S D V+G+KDL +EARIRNGMLAYAAL KLK GD + EA+A FD K+DLGYGL+LK Sbjct: 301 SLDEPVVGLKDLMVRNEARIRNGMLAYAALQKLKQGDVTDEAKAAFDAHKQDLGYGLMLK 360 Query: 362 KYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQ--L 419 ++T V DATP+QI+ A TIP VAP+F+SFR MV LG LFL F +FWF A++ L Sbjct: 361 QFTANVTDATPDQITQAAKKTIPPVAPVFFSFRLMVGLGILFLATFVLAFWFCAQRSLLL 420 Query: 420 APQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLA 479 +RW LR A+ +IPLPW+AAE GWIVAE GRQPWTIAGILPT+LSASSL G LY S+ Sbjct: 421 EKRRWFLRWALWAIPLPWLAAEFGWIVAEVGRQPWTIAGILPTNLSASSLTAGDLYLSIG 480 Query: 480 GFILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESAPGDVLPPPLNPSA 535 GF++FYT L ++E++LM KYARLGPSSLHTG+Y+ E + P D P P + A Sbjct: 481 GFVVFYTVLFIIEIMLMFKYARLGPSSLHTGRYHHEQPSPDQ-PLDNRPLPTSTVA 535 >ref|ZP_02462237.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia thailandensis MSMB43] Length = 531 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/517 (75%), Positives = 441/517 (85%), Gaps = 2/517 (0%) Query: 5 DEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGI 64 EVV LSRLQF +TALYHFLFVPLTLG+SW+LVIME+VYVMTG Q+YKDMT+FWGKLFGI Sbjct: 4 SEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGI 63 Query: 65 NFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFGWDKL 124 NFAMGV TGITLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFFLESTFVGLFFFGW++L Sbjct: 64 NFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRL 123 Query: 125 SRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQ 184 S+ QHL+VT LVALGSNLSALWIL+ANGWMNNPVGAEFN++TMRMEL ++ DV+FNPVAQ Sbjct: 124 SKVQHLVVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVLFNPVAQ 183 Query: 185 VKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDES 244 VKFVHTV+AGYVTASMFVLGVSAWYLLK RDT FALRSFAVAAGFGLA+TL VIVLGDES Sbjct: 184 VKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLGDES 243 Query: 245 GYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSAD 304 GYT GEV K+KLAAIE+EW+T PAPA TL GLPN + ERTDYA+KIPY LGLI TRS Sbjct: 244 GYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQEAERTDYAIKIPYALGLIVTRSIS 303 Query: 305 TQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLLKKYT 364 V+G++DL K E I++GM+AY AL KLK+GD S E +A FD+ K+ LGYGL+LK++T Sbjct: 304 EPVVGLRDLAKRSEEHIQSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFT 363 Query: 365 NKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAP--Q 422 V DATP+QI A TIP VAP+F+SFR MV LGFLFL F A+FWF A++QL + Sbjct: 364 QNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRQLLQDNR 423 Query: 423 RWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFI 482 RW LR AV +IPLPW+AAE GW+VAE GRQPWTIAGILPTHLSASSL LY SLAGFI Sbjct: 424 RWFLRYAVWAIPLPWLAAEFGWVVAELGRQPWTIAGILPTHLSASSLTATDLYLSLAGFI 483 Query: 483 LFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGK 519 LFYT L ++E+ LM KYARLGPSSLHTG+Y+ E G+ Sbjct: 484 LFYTTLFIIEITLMFKYARLGPSSLHTGRYHHEQAGR 520 >ref|ZP_02372614.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia thailandensis TXDOH] Length = 531 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/517 (75%), Positives = 442/517 (85%), Gaps = 2/517 (0%) Query: 5 DEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGI 64 EVV LSRLQF +TALYHFLFVPLTLG+SW+LVIME+VYVMTG Q+YKDMT+FWGKLFGI Sbjct: 4 SEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGI 63 Query: 65 NFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFGWDKL 124 NFAMGV TGITLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFFLESTFVGLFFFGW++L Sbjct: 64 NFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRL 123 Query: 125 SRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQ 184 ++ QHLIVT LVALGSNLSALWIL+ANGWMNNPVGAEFN++TMRMEL ++ DV+FNPVAQ Sbjct: 124 TKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVLFNPVAQ 183 Query: 185 VKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDES 244 VKFVHTV+AGYVTASMFVLGVSAWYLLK RDT FALRSFAVAAGFGLA+TL VIVLGDES Sbjct: 184 VKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLGDES 243 Query: 245 GYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSAD 304 GYT GEV K+KLAAIE+EW+T PAPA TL GLPN EERTDYA+KIPY LGLIATRS Sbjct: 244 GYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIATRSIS 303 Query: 305 TQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLLKKYT 364 V+G+++L K EA I++GM+AY AL KLK+GD S E +A FD+ K+ LGYGL+LK++T Sbjct: 304 EPVIGLRELAKRSEAHIQSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFT 363 Query: 365 NKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAP--Q 422 V DATP+QI A TIP VAP+F+SFR MV LGFLFL F A+FW A++QL + Sbjct: 364 QNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWLCARRQLLQDNR 423 Query: 423 RWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFI 482 RW LR AV +IPLPW+AAE GW+VAE GRQPWTIAGILPTHLSASSL LY SLAGFI Sbjct: 424 RWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLAGFI 483 Query: 483 LFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGK 519 +FYT L ++E+ LM KYARLGPSSLHTG+Y+ E G+ Sbjct: 484 VFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGR 520 >ref|YP_441012.1| cytochrome d ubiquinol oxidase subunit I [Burkholderia thailandensis E264] ref|ZP_02386447.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia thailandensis Bt4] ref|ZP_05588597.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia thailandensis E264] gb|ABC38198.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia thailandensis E264] Length = 531 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/517 (75%), Positives = 442/517 (85%), Gaps = 2/517 (0%) Query: 5 DEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGI 64 EVV LSRLQF +TALYHFLFVPLTLG+SW+LVIME+VYVMTG Q+YKDMT+FWGKLFGI Sbjct: 4 SEVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGI 63 Query: 65 NFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFGWDKL 124 NFAMGV TGITLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFFLESTFVGLFFFGW++L Sbjct: 64 NFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRL 123 Query: 125 SRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQ 184 ++ QHLIVT LVALGSNLSALWIL+ANGWMNNPVGAEFN++TMRMEL ++ DV+FNPVAQ Sbjct: 124 TKVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVLFNPVAQ 183 Query: 185 VKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDES 244 VKFVHTV+AGYVTASMFVLGVSAWYLLK RDT FALRSFAVAAGFGLA+TL VIVLGDES Sbjct: 184 VKFVHTVSAGYVTASMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLGDES 243 Query: 245 GYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSAD 304 GYT GEV K+KLAAIE+EW+T PAPA TL GLPN EERTDYA+KIPY LGLIATRS Sbjct: 244 GYTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIATRSIS 303 Query: 305 TQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLLKKYT 364 V+G+++L K EA I++GM+AY AL KLK+GD S E +A FD+ K+ LGYGL+LK++T Sbjct: 304 EPVIGLRELAKRSEAHIQSGMIAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFT 363 Query: 365 NKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAP--Q 422 V DATP+QI A TIP VAP+F+SFR MV LGFLFL F A+FW A++QL + Sbjct: 364 QNVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWLCARRQLLQDNR 423 Query: 423 RWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFI 482 RW LR AV +IPLPW+AAE GW+VAE GRQPWTIAGILPTHLSASSL LY SLAGFI Sbjct: 424 RWFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTATDLYLSLAGFI 483 Query: 483 LFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGK 519 +FYT L ++E+ LM KYARLGPSSLHTG+Y+ E G+ Sbjct: 484 VFYTALFIIEITLMFKYARLGPSSLHTGRYHHEQAGR 520