BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0001.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776451.1| transcription regulator protein [Herbaspiril... 369 e-101 ref|YP_004753410.1| hypothetical protein CFU_2760 [Collimonas fu... 296 1e-78 ref|YP_550909.1| hypothetical protein Bpro_4118 [Polaromonas sp.... 252 2e-65 ref|YP_787607.1| hypothetical protein BAV3112 [Bordetella avium ... 249 1e-64 ref|YP_980735.1| hypothetical protein Pnap_0493 [Polaromonas nap... 249 1e-64 emb|CBJ40918.1| putative transcriptional regulator arsR family, ... 243 7e-63 ref|NP_522802.1| hypothetical protein RS03185 [Ralstonia solanac... 243 7e-63 ref|YP_003748548.1| ArsR family transcriptional regulator [Ralst... 243 1e-62 emb|CCA86852.1| putative transcriptional regulator arsR family,w... 242 1e-62 ref|YP_001892686.1| conserved hypothetical protein [Ralstonia pi... 242 2e-62 >ref|YP_003776451.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64543.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQS 60 MQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQS Sbjct: 10 MQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQS 69 Query: 61 WRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDK 120 WRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDK Sbjct: 70 WRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDK 129 Query: 121 QVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKFRLGSHPDKE 180 QVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKFRLGSHPDKE Sbjct: 130 QVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKFRLGSHPDKE 189 >ref|YP_004753410.1| hypothetical protein CFU_2760 [Collimonas fungivorans Ter331] gb|AEK62587.1| hypothetical protein CFU_2760 [Collimonas fungivorans Ter331] Length = 215 Score = 296 bits (757), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 154/185 (83%), Positives = 163/185 (88%), Gaps = 8/185 (4%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRFI HFGEMGSRWGINRTVGQIYALLY+ G+ LNAD+IADYL+FSRSNVSMGLKELQSW Sbjct: 22 QRFISHFGEMGSRWGINRTVGQIYALLYVLGQPLNADQIADYLTFSRSNVSMGLKELQSW 81 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 RLVKLLH+P DRREYFEPP DIWDIFK LLEERRRREIEPTLSMLRDALLE N DKQ Sbjct: 82 RLVKLLHQPGDRREYFEPPKDIWDIFKTLLEERRRREIEPTLSMLRDALLENPANDTDKQ 141 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKFRLGS------ 175 QQRMREMY LIELSSSWFD+VQRLSPETL SLMKMG+KVKKLLDVR+KFR+GS Sbjct: 142 AQQRMREMYNLIELSSSWFDDVQRLSPETLASLMKMGSKVKKLLDVRDKFRVGSGGSKSH 201 Query: 176 --HPD 178 HPD Sbjct: 202 HDHPD 206 >ref|YP_550909.1| hypothetical protein Bpro_4118 [Polaromonas sp. JS666] gb|ABE46011.1| transcriptional regulator, ArsR family [Polaromonas sp. JS666] Length = 217 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 116/170 (68%), Positives = 140/170 (82%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+ HFGEMGSRWGINRTVGQIYALLY+ RALNADEI + L+FSRSNVSMGLKELQSW Sbjct: 8 QRFVLHFGEMGSRWGINRTVGQIYALLYVSPRALNADEIGEALAFSRSNVSMGLKELQSW 67 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 LV+L H PNDRREYF P D+W IF+ L EERR+REI+PTLSMLRDAL+E N+DD Sbjct: 68 NLVRLQHLPNDRREYFSAPDDVWAIFRTLAEERRKREIDPTLSMLRDALMEQPANQDDIH 127 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171 Q RM++M++LIEL + W +VQ++ TL+SLMKMGAKV+KLL +++K Sbjct: 128 AQARMKQMHDLIELMTGWLADVQKMDSATLMSLMKMGAKVQKLLQMKDKV 177 >ref|YP_787607.1| hypothetical protein BAV3112 [Bordetella avium 197N] emb|CAJ50722.1| conserved hypothetical protein [Bordetella avium 197N] Length = 190 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 114/172 (66%), Positives = 147/172 (85%) Query: 1 MQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQS 60 ++RF+ HFGEMGSRWG+NRTVGQIYALL++ R L+AD+IA+ L FSRSNVSMGLKELQS Sbjct: 7 IERFVLHFGEMGSRWGVNRTVGQIYALLFLSPRPLHADDIAEALGFSRSNVSMGLKELQS 66 Query: 61 WRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDK 120 WRLVKL+H+ DRREYFE P D+W+IF++L+EE+R+REI+PTL++LR+ALLEP+ ++ Sbjct: 67 WRLVKLMHQVGDRREYFETPKDVWEIFRILMEEKRKREIDPTLTLLREALLEPSSEANEV 126 Query: 121 QVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKFR 172 QQRMREM ELIELS+ WFDEVQRL PETL +LM++G++V+K+L K R Sbjct: 127 HAQQRMREMLELIELSTGWFDEVQRLPPETLQNLMRLGSRVQKVLSFAGKLR 178 >ref|YP_980735.1| hypothetical protein Pnap_0493 [Polaromonas naphthalenivorans CJ2] gb|ABM35814.1| transcriptional regulator, ArsR family [Polaromonas naphthalenivorans CJ2] Length = 207 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/169 (68%), Positives = 140/169 (82%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+ HFGEMGSRWGINRTVGQIYALLY+ RALNAD+I + L+FSRSNVSMGLKELQSW Sbjct: 8 QRFVLHFGEMGSRWGINRTVGQIYALLYVSPRALNADDIGEALAFSRSNVSMGLKELQSW 67 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 LV+L H PNDRREYF+ P D+W IF+ L EERR+REI+PTLSMLRDAL+E +DD Sbjct: 68 NLVRLQHLPNDRREYFQAPEDVWAIFRTLAEERRKREIDPTLSMLRDALMEKPSGEDDIH 127 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREK 170 Q+RMR+M+ELIEL + W +VQ++ TL+SLMKMGAKV+KLL ++K Sbjct: 128 AQERMRQMHELIELMTGWLLDVQKMDSSTLISLMKMGAKVQKLLQAKDK 176 >emb|CBJ40918.1| putative transcriptional regulator arsR family, winged helix repressor DNA-binding domain [Ralstonia solanacearum CMR15] Length = 181 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 113/170 (66%), Positives = 137/170 (80%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIA+ L FSRSNVS+GLKEL+SW Sbjct: 3 QRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLKELESW 62 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 +LV+L HKP DRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE G+ DD+ Sbjct: 63 KLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPGDPDDRH 122 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171 Q RM+EMY LI L ++WFD+VQ+L + L LMKMGAKV+KLL+++ K Sbjct: 123 AQARMKEMYRLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKHKL 172 >ref|NP_522802.1| hypothetical protein RS03185 [Ralstonia solanacearum GMI1000] emb|CAD18392.1| probable cog1510, predicted transcriptional regulators protein [Ralstonia solanacearum GMI1000] Length = 186 Score = 243 bits (621), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 113/170 (66%), Positives = 137/170 (80%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIA+ L FSRSNVS+GLKEL+SW Sbjct: 8 QRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLKELESW 67 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 +LV+L HKP DRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE G+ DD+ Sbjct: 68 KLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPGDPDDRH 127 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171 Q RM+EMY LI L ++WFD+VQ+L + L LMKMGAKV+KLL+++ K Sbjct: 128 AQARMKEMYRLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKNKL 177 >ref|YP_003748548.1| ArsR family transcriptional regulator [Ralstonia solanacearum CFBP2957] emb|CBJ54164.1| putative transcriptional regulator arsR family, winged helix repressor DNA-binding domain [Ralstonia solanacearum CFBP2957] Length = 186 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/170 (65%), Positives = 137/170 (80%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIA+ L FSRSNVS+GLKEL+SW Sbjct: 8 QRFVLHFGEMGSRWGINRTVGQIYALLYAAREPINADEIAEALGFSRSNVSIGLKELESW 67 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 +LV+L HKP DRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE + DD+ Sbjct: 68 KLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPSDPDDRH 127 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171 Q RM+EMY+LI L ++WFD+VQ+L + L LMKMGAKV+KLL+++ K Sbjct: 128 AQARMKEMYQLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKNKL 177 >emb|CCA86852.1| putative transcriptional regulator arsR family,winged helix repressor DNA-binding domain [Ralstonia syzygii R24] Length = 192 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 112/170 (65%), Positives = 137/170 (80%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIA+ L FSRSNVS+GLKEL+SW Sbjct: 14 QRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLKELESW 73 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 +LV+L HKP DRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE + DD+ Sbjct: 74 KLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPADPDDRH 133 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171 Q RM+EMY+LI L ++WFD+VQ+L + L LMKMGAKV+KLL+++ K Sbjct: 134 AQARMKEMYQLITLVTTWFDDVQKLDVDALQQLMKMGAKVQKLLEMKNKL 183 >ref|YP_001892686.1| conserved hypothetical protein [Ralstonia pickettii 12J] ref|YP_002984187.1| hypothetical protein Rpic12D_4272 [Ralstonia pickettii 12D] ref|ZP_07673630.1| transcriptional regulator, arsr family [Ralstonia sp. 5_7_47FAA] gb|ACD29259.1| conserved hypothetical protein [Ralstonia pickettii 12J] gb|ACS65515.1| conserved hypothetical protein [Ralstonia pickettii 12D] gb|EFP68009.1| transcriptional regulator, arsr family [Ralstonia sp. 5_7_47FAA] Length = 186 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/170 (66%), Positives = 137/170 (80%) Query: 2 QRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNVSMGLKELQSW 61 QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIA+ L FSRSNVS+GLKEL+SW Sbjct: 8 QRFVLHFGEMGSRWGINRTVGQIYALLYAAREPINADEIAESLGFSRSNVSIGLKELESW 67 Query: 62 RLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEPAGNKDDKQ 121 +LV+L HKP DRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE + DD+ Sbjct: 68 KLVRLSHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPTDPDDRH 127 Query: 122 VQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 171 Q RM++MYELI L ++WFD+VQ+L E+L LMKMGAKV KLL+++ K Sbjct: 128 AQARMKQMYELITLMTNWFDDVQKLDAESLQQLMKMGAKVHKLLEMKNKL 177