BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0136.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subun... 416 e-114 ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subun... 382 e-104 ref|YP_001353221.1| protease subunit of ATP-dependent Clp protea... 381 e-104 ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subun... 379 e-103 ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subuni... 367 e-100 ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subuni... 361 4e-98 ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formi... 360 5e-98 ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit ... 355 3e-96 ref|YP_725985.1| ATP-dependent Clp protease proteolytic subunit ... 353 6e-96 emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit p... 353 8e-96 >ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum seropedicae SmR1] emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein [Herbaspirillum seropedicae] gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein [Herbaspirillum seropedicae SmR1] Length = 208 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 1 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF 60 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF Sbjct: 5 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF 64 Query: 61 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG 120 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG Sbjct: 65 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG 124 Query: 121 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD 180 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD Sbjct: 125 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD 184 Query: 181 RDNFMSADAAAEYGLIDKVLTERG 204 RDNFMSADAAAEYGLIDKVLTERG Sbjct: 185 RDNFMSADAAAEYGLIDKVLTERG 208 >ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas arsenicoxydans] emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) [Herminiimonas arsenicoxydans] Length = 209 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/202 (91%), Positives = 193/202 (95%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + SALDT MLGMVPMVIEQSGRGERAYDIYSRLLKER+IFLVGPVND ANLIVAQLLFL Sbjct: 7 RTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIVAQLLFL 66 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTGLAASMGAFLLAAG KGK Sbjct: 67 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGK 126 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILA++TG+T+E+IS+DTDR Sbjct: 127 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNQILADRTGKTLEEISRDTDR 186 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSADAA EYG+IDKVLT R Sbjct: 187 DNFMSADAAVEYGMIDKVLTTR 208 >ref|YP_001353221.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium sp. Marseille] sp|A6SY74.1|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium sp. Marseille] Length = 210 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/202 (91%), Positives = 192/202 (95%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + SALDT MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVND MANLIVAQLLFL Sbjct: 8 RTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFL 67 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAI+DTMQFIKP VSTLCTGLAASMGAFLLAAG KGK Sbjct: 68 ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGK 127 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILAE+TG++VE+I+KDTDR Sbjct: 128 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAERTGKSVEEIAKDTDR 187 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSADAA YG+IDKVL R Sbjct: 188 DNFMSADAAVTYGMIDKVLATR 209 >ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subunit [Collimonas fungivorans Ter331] gb|AEK62268.1| ATP-dependent Clp protease proteolytic subunit [Collimonas fungivorans Ter331] Length = 208 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/202 (89%), Positives = 194/202 (96%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + SALDT MLGMVP+VIEQSGRGER+YDIYSRLL+ERIIFLVGPVND ANL+VAQLLFL Sbjct: 6 RNSALDTDMLGMVPIVIEQSGRGERSYDIYSRLLRERIIFLVGPVNDQTANLVVAQLLFL 65 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAI+DTMQF+KP++STLCTG+AASMGAFLLAAGAKGK Sbjct: 66 ESENPDKDISLYINSPGGSVSAGMAIYDTMQFVKPEISTLCTGMAASMGAFLLAAGAKGK 125 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILA+KTGR++EQISKDTDR Sbjct: 126 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNGILADKTGRSIEQISKDTDR 185 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSADAA EYGLIDKVL R Sbjct: 186 DNFMSADAAVEYGLIDKVLATR 207 >ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31661.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae bacterium IMCC9480] Length = 206 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/202 (86%), Positives = 191/202 (94%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + A++ QMLGM+PMVIEQSGRGER+YDIYSRLLKER+IFLVGPVND +ANLIVAQLLFL Sbjct: 4 RNFAMEPQMLGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDGVANLIVAQLLFL 63 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTGLAASMGAFLLAAGAKGK Sbjct: 64 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGAKGK 123 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQP GGAQGQA+DIEIQA+EILYLRERLN ILA+KTGRT+E+I +DT+R Sbjct: 124 RFSLPNSRIMIHQPSGGAQGQATDIEIQAKEILYLRERLNGILADKTGRTIEEIRRDTER 183 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSAD A +YG+IDKVLT R Sbjct: 184 DNFMSADEAEKYGMIDKVLTTR 205 >ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter formigenes OXCC13] gb|EEO29234.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter formigenes OXCC13] Length = 207 Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 172/202 (85%), Positives = 190/202 (94%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + SALDT+MLGM+PMVIEQSGRGERAYDIYSRLLKERI+FLVGPV D ANLIVAQLLFL Sbjct: 5 RDSALDTRMLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFL 64 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAI+DTMQFIKPQVSTLCTGLAASMGAFLLAAG KGK Sbjct: 65 ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGK 124 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQP GGAQGQA+DIEI AREILYLRERLN ILA+ TG+++EQ+++DT+R Sbjct: 125 RFSLPNSRIMIHQPSGGAQGQATDIEIHAREILYLRERLNGILADNTGKSIEQVARDTER 184 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSA+ A +YGLID VL++R Sbjct: 185 DNFMSANEAKDYGLIDDVLSKR 206 >ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS] gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS] Length = 207 Score = 360 bits (925), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 175/200 (87%), Positives = 187/200 (93%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SALDT MLGM+PMVIEQSGRGERA+DIYSRLLKERIIFLVGPV D ANLIVAQLLFLES Sbjct: 7 SALDTSMLGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQLLFLES 66 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENP+KDISLYINSPGGSVSAGMAI+DTMQFI+PQVSTLCTGLAASMGAFLLAAGAKGKRF Sbjct: 67 ENPEKDISLYINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAGAKGKRF 126 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 SLPNSRIMIHQP GGAQGQA+DIEI AREILYLRERLN ILAE TG+ VEQI++DT+RDN Sbjct: 127 SLPNSRIMIHQPSGGAQGQATDIEIHAREILYLRERLNGILAENTGKPVEQIARDTERDN 186 Query: 184 FMSADAAAEYGLIDKVLTER 203 FMSA A +YGLID+VLT R Sbjct: 187 FMSAAEAKDYGLIDEVLTRR 206 >ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia solanacearum GMI1000] ref|ZP_00942970.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia solanacearum UW551] ref|YP_002259441.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum IPO1609] ref|YP_003752399.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] ref|YP_003745574.1| proteolytic subunit of clpa-clpp ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] sp|Q8XYP7.1|CLPP_RALSO RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp emb|CAD15413.1| probable atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp). transmembrane protein [Ralstonia solanacearum GMI1000] gb|EAP74724.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia solanacearum UW551] emb|CAQ36365.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum MolK2] emb|CAQ61373.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum IPO1609] emb|CBJ37925.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum CMR15] emb|CBJ42959.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum CFBP2957] emb|CBJ51116.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia solanacearum PSI07] gb|AEG69047.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase clp) protein [Ralstonia solanacearum Po82] emb|CCA79883.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [blood disease bacterium R229] emb|CCA86475.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Ralstonia syzygii R24] Length = 217 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/201 (83%), Positives = 188/201 (93%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SAL+TQ LG+VPMV+EQSGRGERAYDIYSRLLKER+IF+VG VND ANL+VAQLLFLES Sbjct: 16 SALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLES 75 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENPDKDISLYINSPGGSVSAG+A++DTMQF+KP VSTLC G+AASMGAFLLAAGAKGKR+ Sbjct: 76 ENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRY 135 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 +LPNSRIMIHQPLGGA+GQASDIEIQAREILYLRERLNTIL+E TG+ V++I++DTDRDN Sbjct: 136 ALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDN 195 Query: 184 FMSADAAAEYGLIDKVLTERG 204 FMS D A EYGLIDKVL RG Sbjct: 196 FMSGDQAKEYGLIDKVLARRG 216 >ref|YP_725985.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha H16] ref|YP_002005411.1| ATP-dependent clp protease proteolytic subunit [Cupriavidus taiwanensis LMG 19424] ref|YP_004685345.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator N-1] sp|Q0KBK4.1|CLPP_RALEH RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp sp|B3R4W1.1|CLPP_CUPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit; AltName: Full=Endopeptidase Clp emb|CAJ92617.1| Endopeptidase Clp (type 1) [Ralstonia eutropha H16] emb|CAQ69344.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease [Cupriavidus taiwanensis LMG 19424] gb|AEI76864.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator N-1] Length = 216 Score = 353 bits (907), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 168/201 (83%), Positives = 187/201 (93%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SAL+TQ LG+VPMV+EQSGRGERAYDIYSRLLKER++F+VG VND ANL+VAQLLFLES Sbjct: 16 SALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLES 75 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENPDKD+SLYINSPGGSVSAG+AI+DTMQFIKP VSTLC G+AASMGAFLLAAGAKGKR Sbjct: 76 ENPDKDVSLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRS 135 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 +LPNSRIMIHQPLGGA+GQASDIEIQAREILYLRERLNTIL+E TG+ VE+I++DTDRDN Sbjct: 136 ALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDN 195 Query: 184 FMSADAAAEYGLIDKVLTERG 204 FMS D A +YGLIDKVL RG Sbjct: 196 FMSGDQAVDYGLIDKVLARRG 216 >emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As] Length = 202 Score = 353 bits (906), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 169/200 (84%), Positives = 188/200 (94%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SA D Q LG+VPMVIEQSGRGERAYDIYSRLL+ER+IFLVGP+ND MANL+VAQLLFLES Sbjct: 2 SATDIQNLGLVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLES 61 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTG+AASMGAFL+AAGAKGKR+ Sbjct: 62 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRY 121 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 SLPNSRIMIHQP GGAQGQA+DIEIQAREILYLRERLN ILAE+TG+T+E+I DT+RD Sbjct: 122 SLPNSRIMIHQPSGGAQGQATDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTERDF 181 Query: 184 FMSADAAAEYGLIDKVLTER 203 FMSAD A +YGLID+V+++R Sbjct: 182 FMSADEAKDYGLIDEVISKR 201