BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0121.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776001.1| response regulator consisting of a CheY-like... 363 4e-99 ref|YP_001901261.1| two component Fis family transcriptional reg... 238 2e-61 ref|YP_724722.1| response regulator [Ralstonia eutropha H16] >gi... 237 6e-61 emb|CCA88329.1| putative response regulator/transcriptional regu... 236 2e-60 emb|CCA80829.1| putative response regulator/transcriptional regu... 235 2e-60 ref|ZP_00944229.1| PrrA [Ralstonia solanacearum UW551] >gi|83726... 235 2e-60 ref|YP_003753947.1| Fis family transcriptional regulator [Ralsto... 235 3e-60 ref|NP_518161.1| response regulator transcription regulator prot... 234 3e-60 ref|YP_001795540.1| response regulator, rega/prra/actr family (c... 234 4e-60 ref|YP_004684042.1| response regulator containing a Fis-type DNA... 234 5e-60 >ref|YP_003776001.1| response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Herbaspirillum seropedicae SmR1] gb|ADJ64093.1| response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain, protein [Herbaspirillum seropedicae SmR1] Length = 182 Score = 363 bits (933), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 181/182 (99%), Positives = 182/182 (100%) Query: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS Sbjct: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 Query: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDG 120 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSG+G Sbjct: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGNG 120 Query: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV Sbjct: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 Query: 181 AR 182 AR Sbjct: 181 AR 182 >ref|YP_001901261.1| two component Fis family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002983324.1| two component Fis family transcriptional regulator [Ralstonia pickettii 12D] ref|ZP_07674981.1| response regulator [Ralstonia sp. 5_7_47FAA] gb|ACD28829.1| two component transcriptional regulator, Fis family [Ralstonia pickettii 12J] gb|ACS64652.1| two component transcriptional regulator, Fis family [Ralstonia pickettii 12D] gb|EFP66579.1| response regulator [Ralstonia sp. 5_7_47FAA] Length = 192 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 142/191 (74%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ RF Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALALARQTRFSYVTVDLHLAASDKG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+L+LTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLILTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >ref|YP_724722.1| response regulator [Ralstonia eutropha H16] emb|CAJ91354.1| response regulator containing a Fis-type DNA-binding domain [Ralstonia eutropha H16] Length = 203 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 125/188 (66%), Positives = 143/188 (76%), Gaps = 13/188 (6%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEK------ 58 FL++DD++VFAGTLAR+L RRG+ VAH G AL A R F Y T+DL LE Sbjct: 19 FLVIDDDEVFAGTLARALTRRGYAVQVAHDGRTALALASRIEFAYVTLDLHLEPPPDAGS 78 Query: 59 ----DSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSAL 114 +SGLQ VSPLRQALP AR+L+LTGYASIAT V A+K GAD YLAKPANVDSIL+AL Sbjct: 79 TVPAESGLQLVSPLRQALPDARILILTGYASIATAVAAVKQGADEYLAKPANVDSILTAL 138 Query: 115 SHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRK 174 +G E AA+ L EE PLS+ RLEWEHIQRVLAEH+GNIS+TARALNMHRRTLQRK Sbjct: 139 -MAGVSEDAAQAAL--EEPVPLSVARLEWEHIQRVLAEHDGNISATARALNMHRRTLQRK 195 Query: 175 LAKRPVAR 182 L KRPV+R Sbjct: 196 LGKRPVSR 203 >emb|CCA88329.1| putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [Ralstonia syzygii R24] Length = 192 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >emb|CCA80829.1| putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [blood disease bacterium R229] Length = 204 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 17 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQMPFAYVTVDLHLAASDRG 76 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 77 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 136 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 137 LAL-QVGVSEAVAEQTM--ENPAPLSMARLEWEHIQRVLAEHGGNISATARALNMHRRTL 193 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 194 QRKLGKRPVAK 204 >ref|ZP_00944229.1| PrrA [Ralstonia solanacearum UW551] gb|EAP73296.1| PrrA [Ralstonia solanacearum UW551] emb|CAQ56374.1| response regulator protein [Ralstonia solanacearum MolK2] gb|AEG70611.1| two component heavy metal response transcriptional regulator [Ralstonia solanacearum Po82] Length = 192 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQAPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LTPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >ref|YP_003753947.1| Fis family transcriptional regulator [Ralstonia solanacearum PSI07] emb|CBJ52687.2| putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [Ralstonia solanacearum PSI07] Length = 204 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 17 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQMPFAYVTVDLHLAASDRG 76 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 77 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 136 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 137 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 193 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 194 QRKLGKRPVAK 204 >ref|NP_518161.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD13568.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CBJ39611.1| putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [Ralstonia solanacearum CMR15] Length = 192 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVL+EH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >ref|YP_001795540.1| response regulator, rega/prra/actr family (chey-like receiver domain + fis-type hth domain) [Cupriavidus taiwanensis LMG 19424] emb|CAP62818.1| putative response regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) [Cupriavidus taiwanensis LMG 19424] Length = 203 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 124/188 (65%), Positives = 142/188 (75%), Gaps = 13/188 (6%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEK------ 58 FL++DD++VFAGTLAR+L RRG+ VAH G AL A R F Y T+DL LE Sbjct: 19 FLVIDDDEVFAGTLARALTRRGYAVAVAHDGRTALALAARTDFAYVTLDLHLEPPPEAGS 78 Query: 59 ----DSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSAL 114 +SGLQ V+PLRQALP AR+L+LTGYASIAT V A+K GAD YLAKPANVDSIL+AL Sbjct: 79 TAPAESGLQLVAPLRQALPDARILILTGYASIATAVAAVKQGADEYLAKPANVDSILTAL 138 Query: 115 SHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRK 174 +G E AA+ L EE PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTLQRK Sbjct: 139 -MAGVSEDAAQAAL--EEPVPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTLQRK 195 Query: 175 LAKRPVAR 182 L KRPV+R Sbjct: 196 LGKRPVSR 203 >ref|YP_004684042.1| response regulator containing a Fis-type DNA-binding domain [Cupriavidus necator N-1] gb|AEI75561.1| response regulator containing a Fis-type DNA-binding domain [Cupriavidus necator N-1] Length = 203 Score = 234 bits (597), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 124/188 (65%), Positives = 142/188 (75%), Gaps = 13/188 (6%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEK------ 58 FL++DD++VFAGTLAR+L RRG+ VAH AL A R F Y T+DL LE Sbjct: 19 FLVIDDDEVFAGTLARALTRRGYAVQVAHDSRTALALASRIEFAYVTLDLHLEPPPDAGS 78 Query: 59 ----DSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSAL 114 +SGLQ VSPLRQALP AR+L+LTGYASIAT V A+K GAD YLAKPANVDSIL+AL Sbjct: 79 TVPAESGLQLVSPLRQALPDARILILTGYASIATAVAAVKQGADEYLAKPANVDSILTAL 138 Query: 115 SHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRK 174 +G E AA+ L EE PLS+ RLEWEHIQRVLAEH+GNIS+TARALNMHRRTLQRK Sbjct: 139 -MAGVSEDAAQAAL--EEPVPLSVARLEWEHIQRVLAEHDGNISATARALNMHRRTLQRK 195 Query: 175 LAKRPVAR 182 L KRPV+R Sbjct: 196 LGKRPVSR 203