BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0106.p (132 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776013.1| biopolymer transport ExbD/TolR protein [Herb... 263 7e-69 ref|YP_004751000.1| biopolymer transport protein ExbD/TolR [Coll... 189 1e-46 emb|CAZ87928.1| putative Biopolymer transport exbD protein [Thio... 117 7e-25 ref|YP_003642703.1| Biopolymer transport protein ExbD/TolR [Thio... 115 2e-24 ref|YP_004783558.1| biopolymer transport protein ExbD/TolR [Acid... 112 1e-23 ref|YP_004748701.1| biopolymer transport protein ExbD/TolR [Acid... 109 2e-22 ref|YP_002220344.1| Biopolymer transport protein ExbD/TolR [Acid... 109 2e-22 ref|ZP_05293295.1| Biopolymer transport protein ExbD/TolR [Acidi... 108 2e-22 gb|ACI62888.1| TonB system transport protein ExbD4 [Acidithiobac... 107 5e-22 gb|ACI62914.1| TonB system transport protein ExbD7 [Acidithiobac... 107 5e-22 >ref|YP_003776013.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] gb|ADJ64105.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 132 Score = 263 bits (672), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 130/132 (98%), Positives = 132/132 (100%) Query: 1 MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS 60 MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS Sbjct: 1 MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS 60 Query: 61 LTIVVDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARA 120 LTIVVDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDK+VSLENLLHVMDVARA Sbjct: 61 LTIVVDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKEVSLENLLHVMDVARA 120 Query: 121 AGVEDIGIAAKH 132 AG+EDIGIAAKH Sbjct: 121 AGIEDIGIAAKH 132 >ref|YP_004751000.1| biopolymer transport protein ExbD/TolR [Collimonas fungivorans Ter331] gb|AEK60177.1| Biopolymer transport protein ExbD/TolR [Collimonas fungivorans Ter331] Length = 145 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/132 (70%), Positives = 111/132 (84%) Query: 1 MSRTRYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKS 60 MSRTRY++S EPHIEIIPMIDIMMFLLIFFMVTMLKMID SG+KINVPQA++AA LP S Sbjct: 14 MSRTRYMESHEPHIEIIPMIDIMMFLLIFFMVTMLKMIDASGIKINVPQASTAAPLPKTS 73 Query: 61 LTIVVDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARA 120 LTI V K G +F +G+ + L ++++++ AKLEVL+AGDK+VSLENLL VMDVARA Sbjct: 74 LTITVKKDGDLFLDGQAVSAALLTEKIRKQSLGAKLEVLIAGDKEVSLENLLRVMDVARA 133 Query: 121 AGVEDIGIAAKH 132 AGV+DIGIAAK Sbjct: 134 AGVDDIGIAAKR 145 >emb|CAZ87928.1| putative Biopolymer transport exbD protein [Thiomonas sp. 3As] Length = 156 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 55/128 (42%), Positives = 86/128 (67%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 +Y ++ + IEIIPMIDIM FLL+FF++ L MI +G+ +P +++A ++P +T+ Sbjct: 23 KYFEAKKARIEIIPMIDIMFFLLVFFIMVTLHMIPDAGIASRLPTSSTAQSMPKPQITLA 82 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 VDK+GA+ ++ K L L A LK + T ++V +AG++DVSL+ L+ VMD R AGV Sbjct: 83 VDKSGAIHYDSKVLSPQQLTALLKSKPDTDAMQVTIAGEEDVSLQQLMTVMDACRVAGVT 142 Query: 125 DIGIAAKH 132 IG+AA+ Sbjct: 143 KIGLAARQ 150 >ref|YP_003642703.1| Biopolymer transport protein ExbD/TolR [Thiomonas intermedia K12] gb|ADG30373.1| Biopolymer transport protein ExbD/TolR [Thiomonas intermedia K12] Length = 135 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/128 (42%), Positives = 85/128 (66%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 +Y ++ + IEIIPMIDIM FLL+FF++ L MI +G+ +P +++A ++P +T+ Sbjct: 2 KYFEAKKARIEIIPMIDIMFFLLVFFIMVTLHMIPDAGIASRLPTSSTAQSMPKPQITLA 61 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 VDK+GA+ ++ K L L A LK + T ++V +AG+ DVSL+ L+ VMD R AGV Sbjct: 62 VDKSGAIHYDSKVLSPQQLTALLKSKPDTDAMQVTIAGEDDVSLQQLMTVMDACRVAGVT 121 Query: 125 DIGIAAKH 132 IG+AA+ Sbjct: 122 KIGLAARQ 129 >ref|YP_004783558.1| biopolymer transport protein ExbD/TolR [Acidithiobacillus ferrivorans SS3] gb|AEM47232.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus ferrivorans SS3] Length = 133 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/127 (44%), Positives = 78/127 (61%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 RY + + +EIIPMIDIM+FLL+FF++ L+MI GL + +P A+ A LP TI Sbjct: 4 RYFEQKKGRVEIIPMIDIMLFLLVFFIMITLQMIPDKGLNLQLPTASQAQQLPHPHYTIN 63 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 +DK G++ +G + D L L + K +V +A DK V +N +HVMD + AGV Sbjct: 64 IDKDGSVNVKGHRYDLDGLQKMLATDSDPGKTQVTIAADKGVPFQNFVHVMDRCQKAGVS 123 Query: 125 DIGIAAK 131 DIGIAAK Sbjct: 124 DIGIAAK 130 >ref|YP_004748701.1| biopolymer transport protein ExbD/TolR [Acidithiobacillus caldus SM-1] gb|AEK58001.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus caldus SM-1] Length = 133 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 79/127 (62%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 RY + + +EIIPMIDIM+FLL+FF++ L+MI GL + +P+++ A LP TI Sbjct: 4 RYFEQRKGRVEIIPMIDIMLFLLVFFIMITLQMIPDQGLNLQLPKSSEAKALPRPHYTIN 63 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 ++K G + +GK + L + L AK E+ +A DK V ++ +HVMD + AGV Sbjct: 64 IEKDGTVEVKGKHYDLAGLQSMLAHDGDPAKTEITIAADKAVPFQDFIHVMDACQKAGVS 123 Query: 125 DIGIAAK 131 DIGIAAK Sbjct: 124 DIGIAAK 130 >ref|YP_002220344.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus ferrooxidans ATCC 53993] ref|YP_002426667.1| biopolymer transport protein, ExbD/TolR family [Acidithiobacillus ferrooxidans ATCC 23270] gb|ACH84137.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus ferrooxidans ATCC 53993] gb|ACK79423.1| biopolymer transport protein, ExbD/TolR family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 133 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 79/127 (62%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 RY + + +EIIPMIDIM+FLL+FF++ L+MI GL + +P+++ A LP TI Sbjct: 4 RYFEQKKGRVEIIPMIDIMLFLLVFFIMITLQMIPDKGLSLQLPRSSQAQQLPRPHYTIN 63 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 +DK G++ +G + D L L AK ++ +A DK V ++ +HVMD + AGV Sbjct: 64 IDKDGSVDVKGHHYDLDDLQKMLAGDGNPAKTQITIAADKGVPFQDFVHVMDRCQKAGVS 123 Query: 125 DIGIAAK 131 DIGIAAK Sbjct: 124 DIGIAAK 130 >ref|ZP_05293295.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus caldus ATCC 51756] gb|ACI62957.1| TonB system transport protein ExbD4 [Acidithiobacillus caldus] gb|EET26872.1| Biopolymer transport protein ExbD/TolR [Acidithiobacillus caldus ATCC 51756] Length = 133 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 79/127 (62%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 RY + + +EIIPMIDIM+FLL+FF++ L+MI GL + +P+++ A LP TI Sbjct: 4 RYFEQRKGRVEIIPMIDIMLFLLVFFIMITLQMIPDQGLNLQLPKSSEAKALPRPHYTIN 63 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 ++K G + +GK + L + L AK E+ +A DK V ++ +HVMD + AGV Sbjct: 64 IEKDGTVDVKGKHYDLAGLQSMLAHDGDPAKTEITIAADKAVPFQDFIHVMDACQKAGVS 123 Query: 125 DIGIAAK 131 DIGIAAK Sbjct: 124 DIGIAAK 130 >gb|ACI62888.1| TonB system transport protein ExbD4 [Acidithiobacillus thiooxidans] Length = 132 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 77/127 (60%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 RY + + +EIIPMIDIM+FLL+FF++ L+MI GL + +P ++ A +LP TI Sbjct: 4 RYFEQKKGRVEIIPMIDIMLFLLVFFIMITLQMIPDKGLNLQLPTSSEAQSLPRPHFTIN 63 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 + K G++ +G + D L L K ++ +A DK V ++ +HVMD + AGV Sbjct: 64 IQKDGSVNVKGHHYDLDGLEKMLASDGDPGKTQITIAADKGVPFQDFIHVMDRCQKAGVS 123 Query: 125 DIGIAAK 131 DIGIAAK Sbjct: 124 DIGIAAK 130 >gb|ACI62914.1| TonB system transport protein ExbD7 [Acidithiobacillus thiooxidans] Length = 132 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 77/127 (60%) Query: 5 RYLQSDEPHIEIIPMIDIMMFLLIFFMVTMLKMIDVSGLKINVPQAASAATLPSKSLTIV 64 RY + + +EIIPMIDIM+FLL+FF++ L+MI GL + +P ++ A +LP TI Sbjct: 4 RYFEQKKGRVEIIPMIDIMLFLLVFFIMITLQMIPDKGLNLQLPTSSEAQSLPRPHFTIN 63 Query: 65 VDKTGAMFFEGKPLEHDALVAQLKERAQTAKLEVLVAGDKDVSLENLLHVMDVARAAGVE 124 + K G++ +G + D L L K ++ +A DK V ++ +HVMD + AGV Sbjct: 64 IQKDGSVNVKGHHYDLDGLEKMLASDGDPGKTQITIAADKGVPFQDFIHVMDRCQKAGVS 123 Query: 125 DIGIAAK 131 DIGIAAK Sbjct: 124 DIGIAAK 130