BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0105.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776014.1| biopolymer transport protein [Herbaspirillum... 477 e-133 ref|YP_004750999.1| MotA/TolQ/ExbB proton channel [Collimonas fu... 253 1e-65 ref|YP_003911013.1| MotA/TolQ/ExbB proton channel [Burkholderia ... 156 3e-36 ref|ZP_02886225.1| MotA/TolQ/ExbB proton channel [Burkholderia g... 154 7e-36 ref|ZP_02889281.1| MotA/TolQ/ExbB proton channel [Burkholderia a... 152 4e-35 emb|CAZ87929.1| putative MotA/TolQ/ExbB proton channel [Thiomona... 125 4e-27 ref|ZP_06890201.1| MotA/TolQ/ExbB proton channel [Methylosinus t... 125 6e-27 ref|YP_003642704.1| MotA/TolQ/ExbB proton channel [Thiomonas int... 124 9e-27 ref|YP_004782669.1| MotA/TolQ/ExbB proton channel [Acidithiobaci... 122 5e-26 gb|ACI62915.1| TonB system transport protein ExbB7 [Acidithiobac... 121 9e-26 >ref|YP_003776014.1| biopolymer transport protein [Herbaspirillum seropedicae SmR1] gb|ADJ64106.1| biopolymer transport protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 240/241 (99%), Positives = 240/241 (99%) Query: 1 MSNLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRN 60 MSNLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRN Sbjct: 1 MSNLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRN 60 Query: 61 DAALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA 120 DAALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA Sbjct: 61 DAALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA 120 Query: 121 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY 180 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY Sbjct: 121 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY 180 Query: 181 FSKRVRLALLELDLIKLVFIKQHCLLEESIVLRHNAEAHLAGQGKAAPKRTADVAYAGAA 240 FSKRVRLALLELDLIKLVFIKQHCLLEESIVLRHNAEAH AGQGKAAPKRTADVAYAGAA Sbjct: 181 FSKRVRLALLELDLIKLVFIKQHCLLEESIVLRHNAEAHPAGQGKAAPKRTADVAYAGAA 240 Query: 241 S 241 S Sbjct: 241 S 241 >ref|YP_004750999.1| MotA/TolQ/ExbB proton channel [Collimonas fungivorans Ter331] gb|AEK60176.1| MotA/TolQ/ExbB proton channel [Collimonas fungivorans Ter331] Length = 238 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 137/210 (65%), Positives = 173/210 (82%) Query: 1 MSNLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRN 60 M+ +Q ++LS QSMGIIP+LAL+LL+VLAV++ER FF R +PSG +ID+ L DHR Sbjct: 1 MNAFQQFIDLSMQSMGIIPLLALILLIVLAVAIERIAFFGRTVPSGARIDRELSAIDHRQ 60 Query: 61 DAALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAA 120 + AL++IA RYRATVFG TL A V++R L + +AMDRY+DEAIVRTMP+LD+ LWL+ AA Sbjct: 61 EQALREIAVRYRATVFGGTLQAVVDARHLDTPDAMDRYVDEAIVRTMPQLDKHLWLVNAA 120 Query: 121 ITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSY 180 +TLGPLIGLLGTIIGITESFNVLG AG S+GAVT GIGH+L+ATGCGL+VA+ GVAANSY Sbjct: 121 VTLGPLIGLLGTIIGITESFNVLGAAGPSAGAVTGGIGHALIATGCGLIVAVVGVAANSY 180 Query: 181 FSKRVRLALLELDLIKLVFIKQHCLLEESI 210 F KR RL +L+LDL+KL+ I + L + S+ Sbjct: 181 FDKRARLTILQLDLLKLMCINRLHLTDYSV 210 >ref|YP_003911013.1| MotA/TolQ/ExbB proton channel [Burkholderia sp. CCGE1003] gb|ADN61722.1| MotA/TolQ/ExbB proton channel [Burkholderia sp. CCGE1003] Length = 203 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 132/194 (68%), Gaps = 2/194 (1%) Query: 4 LEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRNDAA 63 L L+ S QSMG+IPILA + L+ +++ VERF+FF+R + +GK ++ L + N + Sbjct: 2 LNTLINYSVQSMGLIPILAFIFLLGISIIVERFMFFSRAVKAGKTLEHDLKMVEPANLSD 61 Query: 64 LQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAITL 123 Q +A+ Y TV G + +A++ R ++R ++E I+ MP LDR LW+L A+TL Sbjct: 62 AQKVAEHYGQTVQGELVKSALKVRGKPEA-VVERELEETIMFQMPRLDRNLWILDTAVTL 120 Query: 124 GPLIGLLGTIIGITESFNVLGTAGSSS-GAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 GPL+GLLGTIIG+ ESFNVLGT+G+++ VT GIGH+L AT CGL +AI V +YF+ Sbjct: 121 GPLLGLLGTIIGMVESFNVLGTSGTANPNGVTGGIGHALTATACGLTIAIVCVIFLNYFN 180 Query: 183 KRVRLALLELDLIK 196 KR+R+ + + DLIK Sbjct: 181 KRIRMTVNQFDLIK 194 >ref|ZP_02886225.1| MotA/TolQ/ExbB proton channel [Burkholderia graminis C4D1M] gb|EDT08109.1| MotA/TolQ/ExbB proton channel [Burkholderia graminis C4D1M] Length = 203 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 132/194 (68%), Gaps = 2/194 (1%) Query: 4 LEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRNDAA 63 L L+ S QSMG+IP+LA + L+ +++ VERF+FF+R + +GK ++ L + N + Sbjct: 2 LNTLINYSVQSMGLIPLLAFIFLLGISIIVERFMFFSRAVKAGKTLEHDLKMVEPANLSD 61 Query: 64 LQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAITL 123 Q +A+ Y TV G + +A++ R ++R ++E I+ MP LDR LW+L A+TL Sbjct: 62 AQKVAEHYGQTVQGELVKSALKVRGKPEA-VVERELEETIMFQMPRLDRNLWILDTAVTL 120 Query: 124 GPLIGLLGTIIGITESFNVLGTAGSSS-GAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 GPL+GLLGTIIG+ ESFNVLGT+G+++ VT GIGH+L AT CGL +AI V +YF+ Sbjct: 121 GPLLGLLGTIIGMVESFNVLGTSGTANPNGVTGGIGHALTATACGLTIAIVCVIFLNYFN 180 Query: 183 KRVRLALLELDLIK 196 KR+R+ + + DLIK Sbjct: 181 KRIRMTVNQFDLIK 194 >ref|ZP_02889281.1| MotA/TolQ/ExbB proton channel [Burkholderia ambifaria IOP40-10] gb|EDT05130.1| MotA/TolQ/ExbB proton channel [Burkholderia ambifaria IOP40-10] Length = 203 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 130/194 (67%), Gaps = 2/194 (1%) Query: 4 LEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRNDAA 63 + L+ S QSMG+IP+LA + L+ +++ VERFIFF+R + +GK ++ L + N Sbjct: 2 INTLINYSVQSMGLIPLLAFIFLLGISIIVERFIFFSRAVKAGKTLEHDLKMVEPANLGD 61 Query: 64 LQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAITL 123 Q +A+ Y+ TV G + +A++ + ++R ++E I+ MP LDR LW+L A+TL Sbjct: 62 AQKVAEHYKQTVQGELVKSALKVQGKPEA-VVERELEETIMFQMPRLDRNLWILDTAVTL 120 Query: 124 GPLIGLLGTIIGITESFNVLGTAGSSS-GAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 GPL+GLLGTIIG+ ESFNVLG +G+S+ VT GIGH+L AT CGL +AI V +YF+ Sbjct: 121 GPLLGLLGTIIGMVESFNVLGASGTSNPNGVTGGIGHALTATACGLTIAIICVIFLNYFN 180 Query: 183 KRVRLALLELDLIK 196 KR+R+ + DLIK Sbjct: 181 KRIRMTANQFDLIK 194 >emb|CAZ87929.1| putative MotA/TolQ/ExbB proton channel [Thiomonas sp. 3As] Length = 238 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 14/204 (6%) Query: 3 NLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRN-- 60 +L+ L L++ S GI+ I+ALLL V LAVSVERF +R L S K + L H + Sbjct: 2 SLDTLTHLAQTSGGILYIMALLLFVALAVSVERFWAISRMLASAKGWIRELKSHAHVDVK 61 Query: 61 --DAALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYID---EAIVRTMPELDRALW 115 A + D A A V L + + +D + D EA++ P +DR LW Sbjct: 62 QLKAKVDDDADSPAAQVVAVALQHDL-------ADPLDHFTDRLEEAVMDQAPRIDRGLW 114 Query: 116 LLGAAITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGV 175 +L +TL PL+GLLGTIIG+ +F+ L G+++ AVT G+G +LLAT GL +A+ G+ Sbjct: 115 MLDTIVTLAPLLGLLGTIIGMFNTFSALSNPGAATQAVTGGVGEALLATAAGLFIAVLGL 174 Query: 176 AANSYFSKRVRLALLELDLIKLVF 199 A + ++RVRL + +L+ IKL+ Sbjct: 175 VAFNALNQRVRLVMHQLERIKLML 198 >ref|ZP_06890201.1| MotA/TolQ/ExbB proton channel [Methylosinus trichosporium OB3b] gb|EFH01321.1| MotA/TolQ/ExbB proton channel [Methylosinus trichosporium OB3b] Length = 224 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 120/207 (57%) Query: 3 NLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRNDA 62 + ++++EL+ S GI+ ++ L+LL+ L VS ER + + + L DH + A Sbjct: 2 SFDRIIELAAGSGGILYVMPLMLLLALTVSFERSWCLGGLVRRCRAVMARLSALDHIDRA 61 Query: 63 ALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAIT 122 A+ +R R L AA E+ L + I+EAI++ +P +DR+LWLL +T Sbjct: 62 AIGAEIERLREGPIARILRAAREAPNLRDRTLLQARIEEAILQEVPAIDRSLWLLDTIVT 121 Query: 123 LGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 L PL+GLLGTIIG+ SF VLG GSS +T G+ +L+AT GL +AI GV + Sbjct: 122 LAPLLGLLGTIIGMFNSFQVLGKPGSSPTDITAGVAEALVATAAGLFIAIVGVFFFNGLQ 181 Query: 183 KRVRLALLELDLIKLVFIKQHCLLEES 209 RVRL + +L+ +K+V + + ++++S Sbjct: 182 TRVRLHVHQLETLKMVLVNRMAIVDDS 208 >ref|YP_003642704.1| MotA/TolQ/ExbB proton channel [Thiomonas intermedia K12] gb|ADG30374.1| MotA/TolQ/ExbB proton channel [Thiomonas intermedia K12] Length = 238 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 14/204 (6%) Query: 3 NLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRN-- 60 +L+ L L++ S GI+ I+ALLL + LAVSVERF +R L S K L H + Sbjct: 2 SLDTLTHLAQTSGGILYIMALLLFIALAVSVERFWAISRMLASAKGWILELKSHAHVDVK 61 Query: 61 --DAALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYID---EAIVRTMPELDRALW 115 A ++D A A V L + + +D + D EA++ P +DR LW Sbjct: 62 QLKAKVEDDADSPAAQVVAVALQHDL-------ADPLDHFTDRLEEAVMDQAPRIDRGLW 114 Query: 116 LLGAAITLGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGV 175 +L +TL PL+GLLGTIIG+ +F+ L G+++ AVT G+G +LLAT GL +A+ G+ Sbjct: 115 MLDTIVTLAPLLGLLGTIIGMFNTFSALSNPGAATQAVTGGVGEALLATAAGLFIAVLGL 174 Query: 176 AANSYFSKRVRLALLELDLIKLVF 199 A + ++RVRL + +L+ IKL+ Sbjct: 175 VAFNALNQRVRLVMHQLERIKLML 198 >ref|YP_004782669.1| MotA/TolQ/ExbB proton channel [Acidithiobacillus ferrivorans SS3] gb|AEM46343.1| MotA/TolQ/ExbB proton channel [Acidithiobacillus ferrivorans SS3] Length = 229 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 123/239 (51%), Gaps = 14/239 (5%) Query: 3 NLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRNDA 62 N+ L+ L+ S G++ +LA LL+V L V V+RF + R + G Q L + + Sbjct: 2 NIAYLIHLANYSDGVLYVLAGLLVVALGVIVDRFWYLRRTILRGTVFVQELAQHGRLDRG 61 Query: 63 ALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAIT 122 ALQ +A L A G+ + ++E+I+ P+LDR LW+L IT Sbjct: 62 ALQTLADAAGDLPEAALLQTAASHSGHVQGDPLASRLEESILVMAPQLDRRLWVLDTIIT 121 Query: 123 LGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 L PL+GL GTIIG+ +F++L G + AVT G+ +L+AT GL +A+ G+ A + F+ Sbjct: 122 LAPLLGLFGTIIGMFHAFSILAAPGHAPAAVTGGVADALVATATGLFIAMTGLVAFNAFN 181 Query: 183 KRVRLALLELDLIKLVFIKQHCLLEESIVLRHNAEAHLAGQGK---AAPKRTADVAYAG 238 +VR LL+LD +K + + R + G+G A PK A VA AG Sbjct: 182 NQVRQILLQLDSVKTMLLN-----------RMDGHPITDGEGNIQTAMPKMAAAVARAG 229 >gb|ACI62915.1| TonB system transport protein ExbB7 [Acidithiobacillus thiooxidans] Length = 227 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 111/200 (55%) Query: 3 NLEQLLELSRQSMGIIPILALLLLVVLAVSVERFIFFARCLPSGKQIDQALMRADHRNDA 62 NL + L+ S G++ IL L+LLV LAV V+RF + R + G Q L R + Sbjct: 2 NLHYFIHLANYSDGVLYILGLMLLVELAVMVDRFWYLRRTILRGLVFVQELGRHGRLDRE 61 Query: 63 ALQDIAQRYRATVFGPTLHAAVESRALASGEAMDRYIDEAIVRTMPELDRALWLLGAAIT 122 AL +A+ L A GEA+ ++E+++ P+LDR LWLL IT Sbjct: 62 ALSTLAEDAGDLPEAALLRTAAAHSGQVKGEALASRLEESVLVIAPKLDRRLWLLDTIIT 121 Query: 123 LGPLIGLLGTIIGITESFNVLGTAGSSSGAVTNGIGHSLLATGCGLLVAIAGVAANSYFS 182 L PL+GL GTIIG+ +F+VL G + VT G+ +L++T GL +A+ G+ + F+ Sbjct: 122 LAPLLGLFGTIIGMFHAFSVLAQPGHAPMQVTGGVADALVSTASGLFIAMLGLLTFNAFN 181 Query: 183 KRVRLALLELDLIKLVFIKQ 202 +VR+ LL+LD +K + I + Sbjct: 182 NQVRMILLQLDSVKTMLINR 201