BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0098.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776020.1| intracellular protease/amidase [Herbaspirill... 462 e-128 ref|YP_001767635.1| ThiJ/PfpI domain-containing protein [Methylo... 241 6e-62 ref|ZP_01301899.1| hypothetical protein SKA58_02455 [Sphingomona... 237 1e-60 ref|ZP_08387055.1| DJ-1/PfpI family protein [Sphingomonas sp. S1... 237 1e-60 ref|YP_002275347.1| ThiJ/PfpI domain-containing protein [Glucona... 236 2e-60 ref|ZP_05044303.1| transcriptional regulator, Fis family [Cyanob... 231 5e-59 ref|ZP_01220855.1| putative ThiJ/PfpI family protein [Photobacte... 230 1e-58 ref|YP_130934.1| putative ThiJ/PfpI family protein [Photobacteri... 230 1e-58 ref|YP_957294.1| ThiJ/PfpI domain-containing protein [Marinobact... 229 2e-58 ref|ZP_02887290.1| ThiJ/PfpI domain protein [Burkholderia gramin... 229 3e-58 >ref|YP_003776020.1| intracellular protease/amidase [Herbaspirillum seropedicae SmR1] emb|CAM32588.1| Intracellular protease/amidase protein [Herbaspirillum seropedicae] gb|ADJ64112.1| intracellular protease/amidase protein [Herbaspirillum seropedicae SmR1] Length = 232 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 230/232 (99%), Positives = 231/232 (99%) Query: 1 MSQAKILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGS 60 MSQAKILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGS Sbjct: 1 MSQAKILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGS 60 Query: 61 VKPRGENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVK 120 VKPRGENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDA+VK Sbjct: 61 VKPRGENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDAHVK 120 Query: 121 AIVEAAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFL 180 AIVEAAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFL Sbjct: 121 AIVEAAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFL 180 Query: 181 LESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALELRA 232 LESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEAL LRA Sbjct: 181 LESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALALRA 232 >ref|YP_001767635.1| ThiJ/PfpI domain-containing protein [Methylobacterium sp. 4-46] gb|ACA15201.1| ThiJ/PfpI domain protein [Methylobacterium sp. 4-46] Length = 231 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 132/231 (57%), Positives = 164/231 (70%) Query: 1 MSQAKILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGS 60 M++ ILMI TS++ MGD KPTG+W EELA PY A VDAGA V +AS AGG PIDP S Sbjct: 1 MARFSILMIATSAATMGDPAKPTGVWFEELATPYCAFVDAGAAVTLASIAGGPVPIDPRS 60 Query: 61 VKPRGENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVK 120 VKP+GEN+A VER L DA + +A T + + E DAVF PGGHGTM DLP A + Sbjct: 61 VKPKGENEAAVERFLGDAAASKALAETPAIAAIDAEADDAVFLPGGHGTMVDLPESAALA 120 Query: 121 AIVEAAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFL 180 A++ A+A GK VA+VCHG AGLV+A G P+VQG RV FTD+EER VGL + VPFL Sbjct: 121 ALLGKAWAQGKVVAAVCHGPAGLVNAKAETGAPLVQGRRVTGFTDSEERAVGLDAAVPFL 180 Query: 181 LESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALELR 231 +E+RLRELGGV+E ++ FA+ DG+L+TGQNP SS A ++L+AL R Sbjct: 181 VETRLRELGGVYERAADFHPFAVADGRLVTGQNPASSALTARLVLDALAAR 231 >ref|ZP_01301899.1| hypothetical protein SKA58_02455 [Sphingomonas sp. SKA58] gb|EAT10604.1| hypothetical protein SKA58_02455 [Sphingomonas sp. SKA58] Length = 231 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 122/225 (54%), Positives = 151/225 (67%) Query: 5 KILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSVKPR 64 +ILM+ TS+ RM +PTG+W EEL PYYA DAGAEV +AS GG P+D SV Sbjct: 3 RILMVATSADRMTPGTEPTGVWLEELTTPYYAFRDAGAEVTLASIKGGAIPVDQRSVNAD 62 Query: 65 GENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKAIVE 124 GENDA VER L D L+ +A T + G+DA+F PGGHGTM+D P + +VE Sbjct: 63 GENDASVERYLKDEALKGEVASTLVFTSIDPAGYDALFLPGGHGTMFDYPVSDELARLVE 122 Query: 125 AAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLLESR 184 GK VA+VCHG AGLVSA +ADG P V G RV FTD+EER VGL VPFLLE+R Sbjct: 123 RFDREGKIVAAVCHGPAGLVSAKKADGTPFVAGRRVAGFTDSEERAVGLDQAVPFLLETR 182 Query: 185 LRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALE 229 L+ELGG EG ++ FA+RDG L+TGQNP S+ AE+++EAL+ Sbjct: 183 LKELGGKHEGGPDFAPFALRDGNLVTGQNPASATLTAELVMEALK 227 >ref|ZP_08387055.1| DJ-1/PfpI family protein [Sphingomonas sp. S17] gb|EGI57086.1| DJ-1/PfpI family protein [Sphingomonas sp. S17] Length = 226 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/225 (53%), Positives = 149/225 (66%) Query: 8 MIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSVKPRGEN 67 MI TS+ RM +PTG+W EEL PYYA D GA+V +AS GG P+D SV GEN Sbjct: 1 MIATSADRMTPGTEPTGVWLEELTTPYYAFRDGGADVTLASIKGGAIPVDQRSVNADGEN 60 Query: 68 DAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKAIVEAAY 127 DA VER L D L+ +A T + +DAVF PGGHGTM+D PG + +VE Sbjct: 61 DASVERYLKDEALKAEVADTLAFTSIDASVYDAVFLPGGHGTMFDYPGSEELARLVERFD 120 Query: 128 AGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLLESRLRE 187 GK VA+VCHG AGLVSA + DG P V G RV +FTD+EER VGL VPFLLE+R++E Sbjct: 121 REGKIVAAVCHGPAGLVSAKKPDGTPFVAGRRVAAFTDSEERAVGLDQAVPFLLETRMKE 180 Query: 188 LGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALELRA 232 LG EG ++Q FA+RDG L+TGQNP S+ R AE+++EAL +A Sbjct: 181 LGAHHEGGPDFQPFALRDGNLVTGQNPASATRTAELVMEALTAKA 225 >ref|YP_002275347.1| ThiJ/PfpI domain-containing protein [Gluconacetobacter diazotrophicus PAl 5] gb|ACI50732.1| ThiJ/PfpI domain protein [Gluconacetobacter diazotrophicus PAl 5] Length = 267 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 119/228 (52%), Positives = 153/228 (67%) Query: 2 SQAKILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSV 61 +Q KILMI TS+ R+G TG+W EEL P+YA DAGAEV +AS AGG PID SV Sbjct: 39 TQMKILMIATSADRLGQGGHATGVWLEELTTPFYAFQDAGAEVTLASIAGGTVPIDTRSV 98 Query: 62 KPRGENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKA 121 K G+N+A V+R LAD L++ +A T + GFDAVF PGGHGTM D P + + Sbjct: 99 KEVGQNEASVDRYLADPALRQTVAATPKFTAIDAAGFDAVFLPGGHGTMTDYPENLALAH 158 Query: 122 IVEAAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLL 181 ++E G+ V++VCHG AGL++A + DG P V G RV++F D+EER VGL VPFLL Sbjct: 159 LIEQFDRNGRIVSAVCHGPAGLLTARKPDGTPFVAGRRVSAFADSEERAVGLEHAVPFLL 218 Query: 182 ESRLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALE 229 E RLR LG V+E ++ FAI DG LITGQNP S+ RVA +++E L+ Sbjct: 219 EDRLRALGAVYEQGPDFASFAISDGNLITGQNPASAARVAALVMERLK 266 >ref|ZP_05044303.1| transcriptional regulator, Fis family [Cyanobium sp. PCC 7001] gb|EDY37612.1| transcriptional regulator, Fis family [Cyanobium sp. PCC 7001] Length = 232 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 117/225 (52%), Positives = 150/225 (66%), Gaps = 1/225 (0%) Query: 5 KILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSVKPR 64 +ILM++TS R+GDT +PTG W EELAAPYY L DAGA V +AS GG+ P+DP S P Sbjct: 2 RILMVLTSHDRLGDTGEPTGFWLEELAAPYYVLRDAGAVVTLASPLGGQPPLDPKSSAPD 61 Query: 65 GENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKAIVE 124 + DA R AD QE +A T PL ++ + F+AVFFPGGHG +WDL D V+A++E Sbjct: 62 FQTDA-TRRFQADPAAQEALAATLPLAQVRADSFEAVFFPGGHGPLWDLAHDPTVRALIE 120 Query: 125 AAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLLESR 184 A A GK VA+VCH +A L +A G+P+V G RV F+++EE VGL VVPFL+E R Sbjct: 121 AFVAQGKPVAAVCHASAVLQAATTPAGEPLVAGRRVTGFSNSEEAAVGLTEVVPFLVEDR 180 Query: 185 LRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALE 229 L+ LGG + +WQ + DG LITGQNP SS+ A LLE L+ Sbjct: 181 LKALGGRYAAAADWQPHVLEDGPLITGQNPASSDPAARALLERLQ 225 >ref|ZP_01220855.1| putative ThiJ/PfpI family protein [Photobacterium profundum 3TCK] gb|EAS42641.1| putative ThiJ/PfpI family protein [Photobacterium profundum 3TCK] Length = 226 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/224 (50%), Positives = 151/224 (67%), Gaps = 1/224 (0%) Query: 5 KILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSVKPR 64 KILM++TS ++GDTD TG W EE AAPYY +D A++ +AS AGG+ PIDP S + Sbjct: 2 KILMVLTSHDKLGDTDHKTGFWIEEFAAPYYRFLDENADITLASPAGGQPPIDPNSELEQ 61 Query: 65 GENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKAIVE 124 + +A V R D Q Q V+A+TR L ++ + +DA+F+PGGHG +WDL D++ A++E Sbjct: 62 SQTEATV-RFNRDEQAQAVLANTRKLSDVNEQDYDAIFYPGGHGPLWDLVSDSDSIALIE 120 Query: 125 AAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLLESR 184 A + GK V++VCH A L++A ADG+ ++ G V FT++EE VGLA VVPFLLE Sbjct: 121 AFWQAGKPVSAVCHAPAVLLNAKTADGEYIISGKAVTGFTNSEETAVGLAEVVPFLLEDE 180 Query: 185 LRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEAL 228 L+ GG FE +W AI+DG LITGQNP SSE VAE LL L Sbjct: 181 LKARGGQFEAAQDWNSLAIQDGMLITGQNPASSEAVAEALLSLL 224 >ref|YP_130934.1| putative ThiJ/PfpI family protein [Photobacterium profundum SS9] emb|CAG21132.1| putative ThiJ/PfpI family protein [Photobacterium profundum SS9] Length = 228 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/224 (50%), Positives = 152/224 (67%), Gaps = 1/224 (0%) Query: 5 KILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSVKPR 64 KILM++TS ++GDTD TG W EE AAPYY +D A++ +AS AGG+ PIDP S + Sbjct: 4 KILMVLTSHDKLGDTDHKTGFWIEEFAAPYYRFLDENADITLASPAGGQPPIDPNSELEQ 63 Query: 65 GENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKAIVE 124 + +A V R +D Q Q V+A+TR L +++ + +DAVF+ GGHG +WDL D++ A++E Sbjct: 64 SQTEATV-RFNSDEQAQAVLANTRKLSDVSEQDYDAVFYSGGHGPLWDLVSDSDSIALIE 122 Query: 125 AAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLLESR 184 A + GK V++VCH A L++A ADG+ ++ G V FT++EE VGLA VVPFLLE Sbjct: 123 AFWQAGKPVSAVCHAPAVLLNAKTADGEYIISGKAVTGFTNSEETAVGLAEVVPFLLEDE 182 Query: 185 LRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEAL 228 L+ GG FE +W AI+DG LITGQNP SSE VAE LL L Sbjct: 183 LKSRGGQFESAQDWNSLAIQDGMLITGQNPASSEAVAEALLSLL 226 >ref|YP_957294.1| ThiJ/PfpI domain-containing protein [Marinobacter aquaeolei VT8] gb|ABM21379.1| ThiJ/PfpI domain protein [Marinobacter aquaeolei VT8] Length = 227 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/226 (50%), Positives = 154/226 (68%), Gaps = 1/226 (0%) Query: 4 AKILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSVKP 63 +K+L++VTS +GDT K TG W EELAAPYY + DAG EV +AS GG+ P+DP S Sbjct: 2 SKVLVVVTSHDTLGDTGKKTGFWLEELAAPYYVMKDAGVEVTLASPKGGQPPLDPASEGE 61 Query: 64 RGENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKAIV 123 + DA R DA+ Q +A+T L E+ VE FDA+F+PGGHG +WDL D + +V Sbjct: 62 EFQTDA-TRRFEQDAEAQRDLANTALLSEMKVEDFDAIFYPGGHGPLWDLTNDTDSIRLV 120 Query: 124 EAAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLLES 183 E +A GK V++VCH A L+ A ++DG P V G+RV FT+ EE VGL +VPFL+E Sbjct: 121 EQFHAAGKPVSAVCHAPAVLLKAKKSDGTPFVDGVRVTGFTNGEEAAVGLTEIVPFLVED 180 Query: 184 RLRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEALE 229 L++ GG++E ++ FAI+DG +ITGQNP SSE VAE+LL++L+ Sbjct: 181 SLQQQGGLYEKKADFTAFAIQDGLIITGQNPMSSEGVAELLLDSLK 226 >ref|ZP_02887290.1| ThiJ/PfpI domain protein [Burkholderia graminis C4D1M] gb|EDT07163.1| ThiJ/PfpI domain protein [Burkholderia graminis C4D1M] Length = 225 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/224 (50%), Positives = 154/224 (68%), Gaps = 2/224 (0%) Query: 5 KILMIVTSSSRMGDTDKPTGLWAEELAAPYYALVDAGAEVVVASTAGGRAPIDPGSVKPR 64 K+LM++TS + +G+T KPTG W EE APYYA VDA EV VAS GG+ PIDP S +P Sbjct: 2 KVLMVLTSHNVLGNTGKPTGFWLEEFTAPYYAFVDADVEVTVASVKGGQPPIDPKSDEPG 61 Query: 65 GENDAIVERMLADAQLQEVIAHTRPLGELTVEGFDAVFFPGGHGTMWDLPGDANVKAIVE 124 + D++ ER DA Q ++A+T L E++ +G+D+VF+PGGHG +WDL D N A++E Sbjct: 62 NQTDSM-ERFKKDAATQAILANTVKLSEVSSDGYDSVFYPGGHGPLWDLVEDRNSIALIE 120 Query: 125 AAYAGGKFVASVCHGAAGLVSAVRADGKPMVQGLRVNSFTDAEEREVGLASVVPFLLESR 184 A Y GK VA+VCH A +++ V G+P+V+G RV FT++EE V L +VVPFL+E Sbjct: 121 AFYNAGKPVAAVCHAPA-VLNNVTYQGQPIVKGKRVTGFTNSEEEAVQLTAVVPFLVEDE 179 Query: 185 LRELGGVFEGTDNWQVFAIRDGQLITGQNPQSSERVAEMLLEAL 228 L+ LGG+FE +W V+ I DG+LITGQNP SS A L++ L Sbjct: 180 LKRLGGLFEKGPDWSVYTIVDGRLITGQNPASSGPAARELIKLL 223