BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0052.p         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002980243.1| hypothetical protein Rpic12D_0264 [Ralstonia...   129   2e-28

>ref|YP_002980243.1| hypothetical protein Rpic12D_0264 [Ralstonia pickettii 12D]
 gb|ACS61571.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 180

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 20  AQQPPEAIMESCLLFDRATDPSILISPISGRAQVMEQGGPAP-YRLFLPDGDNKAMRVGY 78
           A  P ++I++SCLLFD+    +I I PI G A+V++     P Y +F P   + ++ VGY
Sbjct: 19  ASAPSDSIVDSCLLFDKPVRSTISILPIDG-AEVLQDDYEVPGYTVFRPGFKSNSLGVGY 77

Query: 79  ASGKGKEGDYIFVNAHRGYIDRAAAAGFFSPRRLESPRQASFALLRQRGTRYVCVMEGRG 138
           A+ K    D++ V  HRGYI RA   G + P+R+E P +A +A++R+   +YVC++E  G
Sbjct: 78  ATSKHGNDDFVIVGRHRGYISRAIPRGQYKPQRIEPPERALYAVIREDAQQYVCLVESNG 137

Query: 139 RGGSTILRSAFVARIPPKMGGELILYYRLQDMRQL 173
            G +  +RSAFVARIPP     L LY+++ D+++L
Sbjct: 138 NGSAAFVRSAFVARIPPDRNAGLTLYFKVADIKKL 172