BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0039.p (537 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776075.1| methyl-accepting chemotaxis II protein [Herb... 1054 0.0 ref|YP_003773827.1| methyl-accepting chemotaxis sensory transduc... 479 e-133 ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 431 e-118 ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 429 e-118 ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herba... 424 e-116 ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 392 e-106 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 391 e-106 ref|YP_003774566.1| methyl-accepting chemotaxis transducer trans... 391 e-106 ref|YP_001561203.1| methyl-accepting chemotaxis sensory transduc... 376 e-102 ref|YP_002909879.1| methyl-accepting chemotaxis sensory transduc... 367 2e-99 >ref|YP_003776075.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] gb|ADJ64167.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 537 Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/537 (99%), Positives = 535/537 (99%) Query: 1 VKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 +KKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK Sbjct: 1 MKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 Query: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQA 120 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDL+AALDTYRSQISEPEEKALYPQA Sbjct: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLEAALDTYRSQISEPEEKALYPQA 120 Query: 121 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA 180 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA Sbjct: 121 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA 180 Query: 181 ADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIG 240 ADTARIYRESLMWGVASLAISTFIGVALAV IARIISSPLSLAARIADTVAAGNLSTEIG Sbjct: 181 ADTARIYRESLMWGVASLAISTFIGVALAVIIARIISSPLSLAARIADTVAAGNLSTEIG 240 Query: 241 AAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL 300 AAGSDETGQVI ALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL Sbjct: 241 AAGSDETGQVIGALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL 300 Query: 301 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIV 360 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTM+DVVDTMSSISSASGRIV Sbjct: 301 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMQDVVDTMSSISSASGRIV 360 Query: 361 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID 420 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID Sbjct: 361 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID 420 Query: 421 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS 480 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS Sbjct: 421 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS 480 Query: 481 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRLPTSSAALARAGGARSASNARQA 537 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRLPTSSAALARAGGARSASNARQA Sbjct: 481 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRLPTSSAALARAGGARSASNARQA 537 >ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] gb|ADJ61919.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 269/513 (52%), Positives = 364/513 (70%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F + RI+ KL ++F +L+L G FS+ QL VNQ+A ELATNWLPSI++L D+K+ L Sbjct: 4 FYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMKVAL 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQASQR 123 +R+R+N++QL LY D + + + L+ L A Y QISEP EKAL+P + R Sbjct: 64 SRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGVNAR 123 Query: 124 LEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSAADT 183 +++ + HG + A+ + AK + G + + Y SLL D LA VN G QS Sbjct: 124 IDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQSTRSA 183 Query: 184 ARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIGAAG 243 Y ++ +W VA L + G+ALA+ IAR+I++PL A A +AAG+L+ +I A Sbjct: 184 ETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADITARS 243 Query: 244 SDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSLQQT 303 DETGQ+ AAL MN SL I+S V+S ++ IATAS QI++GNLDLSSRTEEQASSL++T Sbjct: 244 DDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSLEET 303 Query: 304 AAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIVEII 363 A+AME++T ++ + ++R+AN+LAL AS++A E G+ + V++TM SI ++S +IV+II Sbjct: 304 ASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIVDII 363 Query: 364 SVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLIDNTV 423 SVIDSIAFQTNILALNAAVEAARAG+ GRGFA+VA EVRSLAQRSATAAKEIK LIDN+V Sbjct: 364 SVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSV 423 Query: 424 DQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDSVTQ 483 QVG GS LVQKAG T+ VV+SV++VT ++++I+A S Q++ I ++N AI QMD VTQ Sbjct: 424 QQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQ 483 Query: 484 QNAALVEEAEAASQALQEQAMQLSSMVSRFRLP 516 QNAALVEEA +ASQ+L QA +LS +V FRLP Sbjct: 484 QNAALVEEAASASQSLSHQAQRLSELVGVFRLP 516 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 262/546 (47%), Positives = 362/546 (66%), Gaps = 12/546 (2%) Query: 1 VKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 +K F DLRISRKL +F +++ + G FS+ QL VN ++ E++TNWLPSI+TL ++ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQA 120 L ++RLRS E Q IL A D + ++ + +L A Y +QISEPEEKA+YP+ Sbjct: 61 LAMSRLRSFELQHIL-AKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEV 119 Query: 121 SQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA 180 + + + EH ++ Q A+ + G S+ Y + L+ LA VN +G D S Sbjct: 120 EKLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISN 179 Query: 181 ADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIG 240 IY ++ +W + ++A + + LAV ++R+I+ PL A +A VA G+L+T I Sbjct: 180 KQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIE 239 Query: 241 AAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL 300 AG DETGQ++ AL MN SL I+ V+ ++TI TAS +IA+GNLDLSSRTEEQASSL Sbjct: 240 PAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSL 299 Query: 301 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIV 360 ++TA+AME++T ++ + ++R+AN+LA+ AS VA + G + VVDTM SI+++S +I Sbjct: 300 EETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIA 359 Query: 361 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID 420 +II VID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVRSLAQRSA AAKEIK LI+ Sbjct: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIE 419 Query: 421 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS 480 +V QV GS+LV++AG TM VV SV +VT IV +I++ S QS+ I ++N AIAQMD Sbjct: 420 GSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDE 479 Query: 481 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRL-----------PTSSAALARAGGAR 529 VTQQNAALVEEA AA+Q+LQEQA L+ V F+L P +A++AR R Sbjct: 480 VTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPPVRAASVARTAAVR 539 Query: 530 SASNAR 535 A R Sbjct: 540 HAPATR 545 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 254/519 (48%), Positives = 357/519 (68%), Gaps = 15/519 (2%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F +L+I++KL +SF ++VL + G F++ +L VNQ++ ++ATNWLP+IK ++ L Sbjct: 4 FNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASL 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDT-------YRSQISEPEEKAL 116 R+R +E Q++ AA P A +D LK + + LD Y +QISE EEK L Sbjct: 64 PRMRISELQMV-TAATP-------AEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVL 115 Query: 117 YPQASQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGG 176 Y + S+ L+ L A+ A+A+F G S+ + S++++ + VN G Sbjct: 116 YEKFSKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGS 175 Query: 177 DQSAADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLS 236 +S ++YR + +W + LA I + LAV +AR +S PL+ A +A+ VA G+L+ Sbjct: 176 KRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLT 235 Query: 237 TEIGAAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQ 296 +I A +DETG ++ +L MN SL I+ V++ ++TI TASQ+IATGNLDLSSRTEEQ Sbjct: 236 MDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQ 295 Query: 297 ASSLQQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSAS 356 A SL++TA+AME++T ++ + ++R+AN+LA AS +A + G + VV TM I+ +S Sbjct: 296 AGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESS 355 Query: 357 GRIVEIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIK 416 RI +IISVID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVRSLAQRSA+AAKEIK Sbjct: 356 NRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK 415 Query: 417 NLIDNTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIA 476 LID++V++VGAGSQLV++AG TM VVASV +VT +VA+I+A S+ QS I EIN AI Sbjct: 416 QLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAIT 475 Query: 477 QMDSVTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 QMD VTQQNAALVEEA AA+Q+LQ+QA +LS +VS F+L Sbjct: 476 QMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >ref|YP_003777141.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] gb|ADJ65233.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/512 (48%), Positives = 358/512 (69%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F++L+I+RKL ++F +LVL + G FS+ QL+ V +++E++T+W+P+ K LGD+KL Sbjct: 4 FKNLKIARKLQLAFLAVLVLMAILGIFSISQLAKVKNASSEISTDWMPAQKKLGDLKLYF 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQASQR 123 RLR ESQL +Y D L +R+ +L LD + Y + + E+ LY + + + Sbjct: 64 VRLRGTESQLAIYDGDVEAMNGLVSRSQAILTGLDKTMKDYEASLDNVPERELYTKVAGQ 123 Query: 124 LEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSAADT 183 + + L EH ++ A +D + +F G S+ LY +L D L +N+ GG+ + AD Sbjct: 124 IGEFLAEHKKIVAAFLARDNPQGRDLFLGYSNKLYPQILGDLEKLIKINQDGGNAATADA 183 Query: 184 ARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIGAAG 243 + +S + + LA + IG+ LA+ +ARII+ PL A IA VA G+L +I Sbjct: 184 DDTFSKSRVGVLVLLAAALAIGMGLALYVARIIARPLQDAVDIARRVAEGDLGAQIQVQS 243 Query: 244 SDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSLQQT 303 DETGQ++ AL MN+ L ++ V+S +++IATAS +IATGNLDLS RTE+QA++L++T Sbjct: 244 KDETGQLMQALDTMNEGLRKVVGQVRSGTDSIATASTEIATGNLDLSRRTEQQATALEET 303 Query: 304 AAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIVEII 363 A+A+E++T ++ + T ++R+AN+LA+ AS VA G + VV+TM +I+ AS RIVEII Sbjct: 304 ASALEELTSTVKQNTDNARQANQLAMAASGVAARGGGVVGQVVETMEAINEASNRIVEII 363 Query: 364 SVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLIDNTV 423 SVID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVRSLAQRSA+AAKEIK LID++V Sbjct: 364 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSV 423 Query: 424 DQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDSVTQ 483 +VGAG+ LV++AG TM VV SV++VT +V++I+A S QS I EIN A+ QMD VTQ Sbjct: 424 SKVGAGTSLVRQAGSTMSEVVESVKRVTDVVSEISAASTEQSVGIDEINRAVTQMDEVTQ 483 Query: 484 QNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 QNAALVEEA AA+Q++QEQA +L++ VS F+L Sbjct: 484 QNAALVEEAAAAAQSMQEQASRLAATVSVFKL 515 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 249/513 (48%), Positives = 348/513 (67%), Gaps = 3/513 (0%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F +L+I+ KL +F ++LV G FS +L+ VN+S+ ++A NWLPSI L + L L Sbjct: 4 FYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMSLAL 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQASQR 123 AR RS + Q +L AD K + R D + L + Y +SEP EK LYP+ + Sbjct: 64 ARSRSFDMQQLL-TADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIERN 122 Query: 124 LEQLLKEHGALMNALAQQDVA-AAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSAAD 182 + L KE M+AL +QD AA A+ S+ +Y L + L++VN +G S AD Sbjct: 123 I-ALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDAD 181 Query: 183 TARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIGAA 242 IY ++ M +A + + +AL+ IAR+++ PL+ A IA VAAG+L+ +I A Sbjct: 182 ADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPTA 241 Query: 243 GSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSLQQ 302 DETGQ++ AL +MN +L +I+ V+ ++TI TAS +IATGN+DLSSRTE+QA +L++ Sbjct: 242 HRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALEE 301 Query: 303 TAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIVEI 362 TA+AME++T ++ + + ++R+AN+LA+ AS VA G + VV TMS+I+ +S +IV+I Sbjct: 302 TASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDI 361 Query: 363 ISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLIDNT 422 I VID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVR+LAQRSA AA EIK LID++ Sbjct: 362 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDDS 421 Query: 423 VDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDSVT 482 V +V GS+LV +AGQTM VVASV++V+ IVA+I A Q++ I +IN A+ QMD T Sbjct: 422 VAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDENT 481 Query: 483 QQNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 QQNAALVE+A AA++ALQEQA +LS VS FRL Sbjct: 482 QQNAALVEQAAAAAKALQEQAGRLSETVSVFRL 514 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/515 (47%), Positives = 338/515 (65%), Gaps = 8/515 (1%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F +L+I+ KL +SF LIL+L V G S+ QL VN + NE+ +NWLPS++ L +K L Sbjct: 99 FYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLKSNL 158 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQASQR 123 A LR+ E Q ++ + K+ Q D+ D+ L Y +SE EE+A+Y Q + Sbjct: 159 ALLRNVEMQHVMSNDAADMDKSAQF-IGDIRGDVQKTLSEYAPLVSE-EERAVYDQLKDK 216 Query: 124 LEQLLKEHGALMN---ALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQSA 180 + + L+ +++ A + D A K I G S L K L +N G SA Sbjct: 217 IPRYLEMDKKIVDISRAFRKDD--AIKEI-RGDSLAAIVELDKQVERLVKINSDGSAASA 273 Query: 181 ADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEIG 240 D IY ++ W + + +G ALA+ IAR+++ PL A +A VA G+L+ +I Sbjct: 274 KDGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADIE 333 Query: 241 AAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASSL 300 SDETGQ++ AL MN SL I+ V+S ++TIATAS QIA GN +LS RTE+QASSL Sbjct: 334 VRSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSL 393 Query: 301 QQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRIV 360 ++TAA+MEQ+T ++ + ++ +AN+LA+ AS VA G + VV TM +I+++S +IV Sbjct: 394 EETAASMEQLTSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIV 453 Query: 361 EIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLID 420 +II VID IAFQTNILALNAAVEAARAG+ GRGFA+VAAEVRSLAQRSA AAKEIK LID Sbjct: 454 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLID 513 Query: 421 NTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMDS 480 ++V++VG G++LV +AG TM+ +VASV +VT I+ +I A S Q+ I +IN AI+QMD Sbjct: 514 DSVEKVGLGTRLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQ 573 Query: 481 VTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 VTQQNAALVEEA AA+ +LQ+QA L+ +V F+L Sbjct: 574 VTQQNAALVEEAAAAAASLQDQAGALAGVVGAFKL 608 >ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62658.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/516 (44%), Positives = 339/516 (65%), Gaps = 9/516 (1%) Query: 4 FRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVKLLL 63 F +L I++KL +SF +++ L + G F++ +L VN+++ E+ + W+P++ +++ L Sbjct: 4 FYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSL 63 Query: 64 ARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRS----QISEPEEKALYPQ 119 LR NE +L+ +T +A + +KD AL R+ ++SEP+EK Y Q Sbjct: 64 PPLRLNELELV-----TAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQ 118 Query: 120 ASQRLEQLLKEHGALMNALAQQDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRGGDQS 179 + L +K L A Q +A+F G S+ LY S++ + + +N G Q+ Sbjct: 119 FLKNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQA 178 Query: 180 AADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEI 239 + + ++R + W V LA + I LA +A +S PL A +IA VA G+L+ I Sbjct: 179 DEEASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRI 238 Query: 240 GAAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASS 299 AG DETG ++ AL MN+SL I+S V+ ++TI TAS +IA GNLDLS+RTE+QA S Sbjct: 239 RPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGS 298 Query: 300 LQQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRI 359 L++TA+AME++T ++ + ++R+AN+LA AS +A + G+ + VV TM I+ +S RI Sbjct: 299 LEETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRI 358 Query: 360 VEIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLI 419 +IISVID IAFQTNILALNAAVEAARAG+ GRGFA+VA+EVRSLAQRSA AAKEIK LI Sbjct: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI 418 Query: 420 DNTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMD 479 D++V +V AGS LV++AG TM VVASV +VT +VA+I+A + QS I+E+N AI QMD Sbjct: 419 DDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMD 478 Query: 480 SVTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 TQQNAALVE+A AA+ +L+ QA L+++V +F+L Sbjct: 479 ETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 >ref|YP_001561203.1| methyl-accepting chemotaxis sensory transducer [Delftia acidovorans SPH-1] gb|ABX32818.1| methyl-accepting chemotaxis sensory transducer [Delftia acidovorans SPH-1] Length = 550 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 247/545 (45%), Positives = 354/545 (64%), Gaps = 12/545 (2%) Query: 1 VKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 ++ FR+L+IS KL ++F +L L T G +++ QLS +NQ++ ++AT W+PS + L D++ Sbjct: 1 MQAFRNLKISSKLLLAFVAVLALTTFVGLYAVLQLSRINQASIDIATRWMPSSRMLLDIR 60 Query: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQA 120 AR R NE Q ++ ++ + ++ K + D Y S IS EKA Y + Sbjct: 61 ATTARYRVNELQYLISTSEQDI-GAFDRIMGELWKKTQTSYDNYASFISSAPEKAAYDEL 119 Query: 121 SQRLEQLLKEHGALMNALAQQDVAAAKAIFA-GASSDLYFSLLKDFSTLADVNRRGGDQS 179 + + KEH +M ALA+ + A G S +L L + ++ GG Q+ Sbjct: 120 GRLRNEYAKEHAMVM-ALARNGRKDEALVLAQGESLELSRRLYDQIDRMVQIDHEGGQQA 178 Query: 180 AADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNLSTEI 239 +YR + +W V L S +G+ALA+T+ARI++ PL+ A +A VA G+L+ I Sbjct: 179 NDHANALYRSARIWVVGLLGASILLGLALALTLARIVARPLNEALGVAQAVAEGDLTRRI 238 Query: 240 GAAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEEQASS 299 A +DETGQ++ AL +M+QSL HI+ V++ +++IATAS QIA+GN DLS RTE QASS Sbjct: 239 QATTTDETGQLLHALHRMDQSLIHIVRQVRNGTDSIATASCQIASGNNDLSVRTEHQASS 298 Query: 300 LQQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSASGRI 359 L++TAA+MEQ+T ++ + T ++R+AN+LA AS+VA + G+ + VVDTM +I ++S +I Sbjct: 299 LEETAASMEQLTVTVRQNTDNARQANQLAASASAVAQQGGEVVSQVVDTMGAIHASSRKI 358 Query: 360 VEIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEIKNLI 419 +II VID+IAFQTNILALNAAVEAARAG+ GRGFA+VAAEVR+LA+R A AAKEIK LI Sbjct: 359 ADIIGVIDAIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALARRCADAAKEIKLLI 418 Query: 420 DNTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAIAQMD 479 +++ +V GS LV +AGQTMQ +V+SV VT I+ +I A S Q+ + +IN AI+QMD Sbjct: 419 EDSNGKVSTGSALVAQAGQTMQNIVSSVRNVTDIMGEITAASVEQTAGLEQINQAISQMD 478 Query: 480 SVTQQNAALVEEAEAASQALQEQAMQLSSMVSRFR---------LPTSSAALARAGGARS 530 VTQQNAALVEEA AA+ +LQEQA L VS F+ LP + + G AR Sbjct: 479 QVTQQNAALVEEAAAAAHSLQEQAYGLQQAVSVFKLEQGLELTALPATPQPMPAPGLARI 538 Query: 531 ASNAR 535 AS A+ Sbjct: 539 ASAAQ 543 >ref|YP_002909879.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR32643.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 515 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 223/520 (42%), Positives = 333/520 (64%), Gaps = 10/520 (1%) Query: 1 VKKFRDLRISRKLFISFGLILVLATVTGTFSLWQLSLVNQSANELATNWLPSIKTLGDVK 60 +K F ++RI +L ++F +L L + G F+L Q S ++ + +++TNWLPS++TLGDV+ Sbjct: 1 MKLFSNVRIGVRLGLAFTAMLSLLCMVGGFALIQASRIHDNTTDISTNWLPSVQTLGDVR 60 Query: 61 LLLARLRSNESQLILYAADPGLTKTLQARTDDVLKDLDAALDTYRSQISEPEEKALYPQA 120 +R +L D + + L+A++ Y IS PEE LY Sbjct: 61 AYANTVRRASMARVLALTDTD-RHLYWEKHEAAANSLNASMKKYDGYISSPEEGELY--- 116 Query: 121 SQRLEQLLKEHGA---LMNALAQ--QDVAAAKAIFAGASSDLYFSLLKDFSTLADVNRRG 175 +R++ + A +N+L + + AA+++ AG S+ LY + + + +N RG Sbjct: 117 -RRIKSAWNNYSAADAHLNSLLESTDNFDAARSLAAGDSTRLYSAFNEALAQDIQLNARG 175 Query: 176 GDQSAADTARIYRESLMWGVASLAISTFIGVALAVTIARIISSPLSLAARIADTVAAGNL 235 ++A+ Y SL + +AIS +GV +A I R I+ P+S + IA+ VA G+L Sbjct: 176 AAHASAEADESYNASLWFASILIAISFGVGVTVAYLITRSITVPISRSVAIAEAVARGDL 235 Query: 236 STEIGAAGSDETGQVIAALGKMNQSLCHIISGVKSCSETIATASQQIATGNLDLSSRTEE 295 +++I G DET +++ AL MN+ L ++ V++ S+ IA +++Q+A GN DLS RTEE Sbjct: 236 TSQIEVRGKDETSRLLRALKNMNEQLVKVVGRVRAGSDNIAVSAEQLAAGNTDLSQRTEE 295 Query: 296 QASSLQQTAAAMEQITGSMLETTAHSRRANELALGASSVAGEAGQTMKDVVDTMSSISSA 355 QA+SL++TAA+MEQ+T ++ + T +++ N +A AS VA G + VV TM IS++ Sbjct: 296 QAASLEETAASMEQLTATVKQNTESAQQGNVIAANASEVARNGGDIVGRVVSTMREISAS 355 Query: 356 SGRIVEIISVIDSIAFQTNILALNAAVEAARAGDGGRGFAIVAAEVRSLAQRSATAAKEI 415 S ++ EIISVI+SIAFQTNILALNAAVEAARAGD GRGFA+VA EVR+LAQRSATAAKEI Sbjct: 356 SAKVAEIISVIESIAFQTNILALNAAVEAARAGDQGRGFAVVAGEVRTLAQRSATAAKEI 415 Query: 416 KNLIDNTVDQVGAGSQLVQKAGQTMQAVVASVEQVTSIVADIAAVSDHQSKEISEINFAI 475 K+LI+N+V++V GS+LV +AG+TM VV SV++V ++ +I A S Q I ++N A+ Sbjct: 416 KSLIENSVERVHTGSELVDEAGRTMNEVVRSVKRVADLMGEITAASIEQRTGIEQVNTAV 475 Query: 476 AQMDSVTQQNAALVEEAEAASQALQEQAMQLSSMVSRFRL 515 QMD VTQQN+ALVEEA AA+Q++ Q+ L VS FRL Sbjct: 476 VQMDQVTQQNSALVEEAAAAAQSMAAQSNSLRDTVSIFRL 515