BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0031.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776084.1| phosphoribosyl-dephospho-CoA transferase [He... 454 e-126 ref|YP_004752367.1| phosphoribosyl-dephospho-CoA transferase [Co... 165 4e-39 ref|ZP_08273813.1| Phosphoribosyl-dephospho-CoA transferase [Oxa... 154 8e-36 emb|CAL61644.2| putative phosphoribosyl-dephospho-CoA transferas... 149 5e-34 ref|YP_001099771.1| phosphoribosyl-dephospho-CoA transferase [He... 142 3e-32 ref|YP_001354249.1| malonate decarboxylase epsilon subunit [Jant... 137 1e-30 ref|YP_001580228.1| phosphoribosyl-dephospho-CoA transferase [Bu... 102 5e-20 ref|ZP_03574586.1| holo-ACP synthase, malonate decarboxylase-spe... 101 1e-19 ref|YP_003451525.1| malonate decarboxylase [Azospirillum sp. B51... 100 3e-19 ref|YP_002947238.1| holo-ACP synthase, malonate decarboxylase-sp... 100 3e-19 >ref|YP_003776084.1| phosphoribosyl-dephospho-CoA transferase [Herbaspirillum seropedicae SmR1] gb|ADJ64176.1| phosphoribosyl-dephospho-CoA transferase protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 233/237 (98%), Positives = 235/237 (99%) Query: 1 MTPAPRHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEADAGADELCAG 60 MTPAPRHHLLWLTEAAWTRLQ QSQDSREQAVLARW+QMRWPVVVRRAEADAGADELCAG Sbjct: 1 MTPAPRHHLLWLTEAAWTRLQTQSQDSREQAVLARWRQMRWPVVVRRAEADAGADELCAG 60 Query: 61 IALPPDAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQA 120 IALPPDAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQA Sbjct: 61 IALPPDAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQA 120 Query: 121 AGIALAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLAQQAAMLPLDGEI 180 AGIALAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLA+QAAMLPLDGEI Sbjct: 121 AGIALAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLARQAAMLPLDGEI 180 Query: 181 VFPDGAAVSWKEWQQVMSKETKSDARVMVKRPAAVALEPVAQLLAALAAREGQACVV 237 VFPDGAAVSWKEWQQVM KETKSDARVMVKRPAAVALEPVAQLLAALAAREGQACVV Sbjct: 181 VFPDGAAVSWKEWQQVMRKETKSDARVMVKRPAAVALEPVAQLLAALAAREGQACVV 237 >ref|YP_004752367.1| phosphoribosyl-dephospho-CoA transferase [Collimonas fungivorans Ter331] gb|AEK61544.1| Phosphoribosyl-dephospho-CoA transferase [Collimonas fungivorans Ter331] Length = 221 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 7/222 (3%) Query: 6 RHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEADAGADELCAGIALPP 65 RH L+WL+ W R AQ+ + +A L RWQ WP V+RR E D ++LC G+ALPP Sbjct: 4 RHSLVWLSADGWQR-AAQTAAAGNRAALERWQSHDWPAVLRRREPDTPEEQLCLGLALPP 62 Query: 66 DAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIAL 125 DA G+K R+ + Q +V P LR A L P W + A +GIA+ Sbjct: 63 DANGDKARIPFQAQFGDVRRITDPLALR----AALPHAPPAWSRALNAFAGDCLHSGIAM 118 Query: 126 AVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLAQQAAMLPLDGEIVFPDG 185 ++GS +WQ +T Q+Y+ +SDIDLLF P S + +G+ LLAQ AA LPLDGE+VF DG Sbjct: 119 RIYGSWAWQVLTQQSYLTRTSDIDLLFTPGSTEEFRRGIALLAQHAARLPLDGEVVFADG 178 Query: 186 AAVSWKEWQQVMSKETKSDARVMVKRPAAVALEPVAQLLAAL 227 AV+WKE Q + + +V+VK + V L P+A L++ L Sbjct: 179 QAVAWKECWQALQGDGGQ--QVLVKARSTVRLVPMAALVSTL 218 >ref|ZP_08273813.1| Phosphoribosyl-dephospho-CoA transferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32713.1| Phosphoribosyl-dephospho-CoA transferase [Oxalobacteraceae bacterium IMCC9480] Length = 214 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 131/225 (58%), Gaps = 15/225 (6%) Query: 6 RHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEADAGADELCAGIALPP 65 RH L +L+ A W + Q + +R A + RW WP++VRR EAD ++C G+ALPP Sbjct: 4 RHSLSFLSAAGWASARLQVE-ARHHAAIERWCAADWPLIVRRHEADCPTGQVCLGLALPP 62 Query: 66 DAQ-GNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIA 124 + + G K RL LR+ EV S P L ++ RL LP WQA + A A + Sbjct: 63 EPESGIKHRLPLRIAIDEVTRSRPPLTLAEV---RL-VLPPAWQAALPA-------ATMP 111 Query: 125 LAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLAQQAAMLPLDGEIVFPD 184 LAVFGS + QAIT Y+R +SD+D+L P + A L GL LL Q A+LPLDGEIVFP Sbjct: 112 LAVFGSTALQAITGLPYLRETSDLDILLQPTTLAALTDGLALLTQVEALLPLDGEIVFPS 171 Query: 185 GAAVSWKEWQQVMSKETKSDARVMVKRPAAVALEPVAQLLAALAA 229 GAAV+WKEW+ ++ + RV+ K V L V LLA+L A Sbjct: 172 GAAVAWKEWRAASAQ--GAAMRVLAKHDEGVMLVRVDALLASLTA 214 >emb|CAL61644.2| putative phosphoribosyl-dephospho-CoA transferase [Herminiimonas arsenicoxydans] Length = 222 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 8/223 (3%) Query: 6 RHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEADAGADELCAGIALPP 65 RH+ +WL+ W A+ + + ++ RW + WP +VRR++ADA D LC G+A PP Sbjct: 4 RHNRVWLSANGWQAACARLPAAHAKELM-RWAEHDWPAIVRRSDADAQPDTLCLGVAPPP 62 Query: 66 DA-QGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIA 124 + G K R+ V A++ AP +L +A L W+ AL + + G+ Sbjct: 63 EPDSGVKTRIPFTVGAADIVRHEAPLVL----SAAESALSPAWRCAFSALAVEAGSRGLE 118 Query: 125 LAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLAQQAAMLPLDGEIVFPD 184 V+GS++ QAIT+ Y+ +SSDIDLLF P +QAQL +G+ LL+ A LPLDGEIVFP Sbjct: 119 FRVYGSVALQAITSLPYLAASSDIDLLFYPRTQAQLQEGMALLSLYAKQLPLDGEIVFPS 178 Query: 185 GAAVSWKEWQQVMSKETKSDARVMVKRPAAVALEPVAQLLAAL 227 AV+WKEW Q + + RV+ K +++ L VA LLA L Sbjct: 179 ARAVAWKEWAQAFANPVRP--RVLAKGMSSLNLVQVADLLAEL 219 >ref|YP_001099771.1| phosphoribosyl-dephospho-CoA transferase [Herminiimonas arsenicoxydans] Length = 192 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/194 (42%), Positives = 115/194 (59%), Gaps = 7/194 (3%) Query: 35 RWQQMRWPVVVRRAEADAGADELCAGIALPPDAQ-GNKPRLALRVQRAEVAASHAPYLLR 93 RW + WP +VRR++ADA D LC G+A PP+ G K R+ V A++ AP +L Sbjct: 2 RWAEHDWPAIVRRSDADAQPDTLCLGVAPPPEPDSGVKTRIPFTVGAADIVRHEAPLVL- 60 Query: 94 DIAAARLHGLPQGWQAGMEALQQQMQAAGIALAVFGSLSWQAITAQAYVRSSSDIDLLFA 153 +A L W+ AL + + G+ V+GS++ QAIT+ Y+ +SSDIDLLF Sbjct: 61 ---SAAESALSPAWRCAFSALAVEAGSRGLEFRVYGSVALQAITSLPYLAASSDIDLLFY 117 Query: 154 PDSQAQLAQGLQLLAQQAAMLPLDGEIVFPDGAAVSWKEWQQVMSKETKSDARVMVKRPA 213 P +QAQL +G+ LL+ A LPLDGEIVFP AV+WKEW Q + + RV+ K + Sbjct: 118 PRTQAQLQEGMALLSLYAKQLPLDGEIVFPSARAVAWKEWAQAFANPVRP--RVLAKGMS 175 Query: 214 AVALEPVAQLLAAL 227 ++ L VA LLA L Sbjct: 176 SLNLVQVADLLAEL 189 >ref|YP_001354249.1| malonate decarboxylase epsilon subunit [Janthinobacterium sp. Marseille] gb|ABR89263.1| malonate decarboxylase epsilon subunit [Janthinobacterium sp. Marseille] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 121/223 (54%), Gaps = 8/223 (3%) Query: 6 RHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEADAGADELCAGIALPP 65 RH +WL+ W R A + D + RW WP+VVRR++ + L G+ALPP Sbjct: 4 RHKRIWLSSRGWQR-AAAAVDKVHLPDMERWAANDWPLVVRRSDVGFEVESLAVGLALPP 62 Query: 66 DAQ-GNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIA 124 DA G K R+ L V +VA P A+A LP WQ L ++ AA + Sbjct: 63 DADSGRKVRIPLSVHPNDVARHETPLAFVHAASA----LPLAWQPAFADLSHELTAAQLE 118 Query: 125 LAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQLAQGLQLLAQQAAMLPLDGEIVFPD 184 V+GS++ QA+T YV ++SDID+LF P + AQL QGL LL A LPLDGEIVFP Sbjct: 119 FRVYGSVALQAMTGLPYVTATSDIDILFYPCTHAQLQQGLHLLQLYAQSLPLDGEIVFPS 178 Query: 185 GAAVSWKEWQQVMSKETKSDARVMVKRPAAVALEPVAQLLAAL 227 G AV+WKEW + + K +V+VK V L V LL+ L Sbjct: 179 GHAVAWKEWVEAVKSPDK--VKVLVKSMRTVNLMDVTALLSEL 219 >ref|YP_001580228.1| phosphoribosyl-dephospho-CoA transferase [Burkholderia multivorans ATCC 17616] ref|YP_001945674.1| phosphoribosyl-dephospho-CoA transferase [Burkholderia multivorans ATCC 17616] gb|ABX15731.1| phosphoribosyl-dephospho-CoA transferase [Burkholderia multivorans ATCC 17616] dbj|BAG43138.1| phosphoribosyl-dephospho-CoA transferase [Burkholderia multivorans ATCC 17616] Length = 222 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 109/222 (49%), Gaps = 18/222 (8%) Query: 6 RHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEAD-AGADELCAGIALP 64 RH L+ LT W A+ V+ W P+VVRRA D A A + GI LP Sbjct: 10 RHTLVTLTAHGWRTAFARDPALGADPVVRAWAAGGRPLVVRRASPDEAAAGRVPLGIPLP 69 Query: 65 PDAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIA 124 P A K R+AL V R VA + P D+ AA P W+ + L G+ Sbjct: 70 PAA--GKRRIALNVARDAVATAGPPPAFADVLAA----APHAWRPTLRELDALGARCGVQ 123 Query: 125 LAVFGSLSWQAITAQAYVRSSSDIDLLF---APDSQAQLAQGLQLLAQQAAMLPLDGEIV 181 VFGSL+WQA+T +Y+ +SSD+D+LF A A L GL +A +A M +DGE++ Sbjct: 124 GRVFGSLAWQALTGDSYLNASSDLDVLFPLPAASCIAPLLDGLAAIAARAPMR-IDGELL 182 Query: 182 FPDGAAVSWKEWQQVMSKETKSDARVMVKRPAAVALEPVAQL 223 DGA V+W+E Q + + V VK AV L P A Sbjct: 183 RDDGAGVNWRELQARLPE-------VAVKTAIAVELMPAAAF 217 >ref|ZP_03574586.1| holo-ACP synthase, malonate decarboxylase-specific [Burkholderia multivorans CGD2M] ref|ZP_03586875.1| holo-ACP synthase, malonate decarboxylase-specific [Burkholderia multivorans CGD1] gb|EED98552.1| holo-ACP synthase, malonate decarboxylase-specific [Burkholderia multivorans CGD1] gb|EEE11223.1| holo-ACP synthase, malonate decarboxylase-specific [Burkholderia multivorans CGD2M] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 108/225 (48%), Gaps = 18/225 (8%) Query: 3 PAPRHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEAD-AGADELCAGI 61 P RH L+ LT W A+ V+ W P+VVRRA D A A + GI Sbjct: 7 PLRRHTLVTLTADGWRTAFARDPALAADPVVRAWADGARPLVVRRASPDEAAAGRVPLGI 66 Query: 62 ALPPDAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAA 121 LPP A K R+AL V VA + P D+ AA P WQ + L Sbjct: 67 PLPPAA--GKRRIALNVAHNAVATAGPPPAFADVLAAA----PHAWQLTLRELDALGARC 120 Query: 122 GIALAVFGSLSWQAITAQAYVRSSSDIDLLF---APDSQAQLAQGLQLLAQQAAMLPLDG 178 G+ VFGSL+WQA+T +Y+ +SSD+D+LF A A L GL +A A M +DG Sbjct: 121 GVQGRVFGSLAWQALTGDSYLSASSDLDVLFPLPAASCIAPLLDGLAAIAAHAPMR-IDG 179 Query: 179 EIVFPDGAAVSWKEWQQVMSKETKSDARVMVKRPAAVALEPVAQL 223 E++ DGA V+W+E Q + + V VK AV L P A Sbjct: 180 ELLRDDGAGVNWRELQARLPE-------VAVKTAIAVELMPAAAF 217 >ref|YP_003451525.1| malonate decarboxylase [Azospirillum sp. B510] dbj|BAI74981.1| malonate decarboxylase [Azospirillum sp. B510] Length = 236 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 103/213 (48%), Gaps = 17/213 (7%) Query: 20 LQAQSQDSREQAVLARWQQMRWPVVVRRAEADAGADELCAGIALPPDAQGNKPRLALRVQ 79 L D +A + W + P+V+ R G L G+A P +K R+ L V Sbjct: 38 LDKAGLDKAARAEVGDWCRAGRPLVIARGRPGDGVGALRLGLATP-----DKRRIGLHVG 92 Query: 80 RAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQAAGIALAVFGSLSWQAITAQ 139 VA P L + A + P+GW+ + L ++ AV+GSL+WQ T Sbjct: 93 TDAVAERRPPLPLAETAGS----APEGWRPMLGDLARRALDLDAPAAVYGSLAWQHQTGL 148 Query: 140 AYVRSSSDIDLLFAPDSQAQLAQGLQLLAQQAAMLP-LDGEIVFPDGAAVSWKEWQQVMS 198 YVR SDIDLLF P + L + L LLA+ P LDGEI+ PDGAAV+W+E Sbjct: 149 RYVRPDSDIDLLFTPSGRRSLERVLALLAEAGDGTPRLDGEILLPDGAAVAWREL----- 203 Query: 199 KETKSDARVMVKRPAAVALEPVAQLLAALAARE 231 AR++VK PAAV L ++ +LA E Sbjct: 204 --AGRPARLLVKGPAAVELRDLSAVLALFEREE 234 >ref|YP_002947238.1| holo-ACP synthase, malonate decarboxylase-specific [Variovorax paradoxus S110] gb|ACS21972.1| holo-ACP synthase, malonate decarboxylase-specific [Variovorax paradoxus S110] Length = 229 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 108/221 (48%), Gaps = 14/221 (6%) Query: 1 MTPAPRHHLLWLTEAAWTRLQAQSQDSREQAVLARWQQMRWPVVVRRAEADAGADELCAG 60 M RH L WLT + W + + D + + LA W R P+V+ R A AGAD A Sbjct: 4 MVSLHRHQLAWLTRSGWAAVLGRPWDVQARDCLAHWALHRLPLVMTRQPAHAGADGWIA- 62 Query: 61 IALPPDAQGNKPRLALRVQRAEVAASHAPYLLRDIAAARLHGLPQGWQAGMEALQQQMQA 120 + LP A + RLAL+V A V L D+ LP +A + L ++ Sbjct: 63 LGLPAPACWGRRRLALQVPHAAVDGLGEFPRLADV-----QHLPPSARAAVRELLGRLSQ 117 Query: 121 AGIALAVFGSLSWQAITAQAYVRSSSDIDLLFAPDSQAQ---LAQGLQLLAQQAAMLPLD 177 A VFGS WQAI+ +VR+ SD+DL A + +A L L +A L LD Sbjct: 118 CHAAARVFGSYGWQAISGLEHVRAGSDLDLSVAVEGAVHADAVACALGLF--EAPQLRLD 175 Query: 178 GEIVFPDGAAVSWKEWQQVMSKETKSDARVMVKRPAAVALE 218 GE++F DGAAV+W+EW + ++ VMVKR V L Sbjct: 176 GELMFGDGAAVAWREWAEWRGGRARA---VMVKRLDGVHLH 213