BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0030.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776085.1| malonate decarboxylase gamma-subunit [Herbas... 500 e-140 ref|ZP_08273962.1| Malonate decarboxylase gamma subunit [Oxaloba... 361 5e-98 ref|ZP_08273814.1| Malonate decarboxylase gamma subunit [Oxaloba... 346 2e-93 ref|YP_001354250.1| malonate decarboxylase gamma subunit [Janthi... 338 5e-91 ref|YP_004752366.1| malonate decarboxylase subunit gamma [Collim... 332 3e-89 ref|YP_001099770.1| malonate decarboxylase subunit MdcE [Hermini... 331 8e-89 ref|YP_001022080.1| malonate decarboxylase subunit gamma [Methyl... 301 5e-80 ref|YP_001789116.1| malonate decarboxylase subunit gamma [Leptot... 293 1e-77 ref|YP_001562792.1| malonate decarboxylase subunit gamma [Delfti... 290 9e-77 ref|YP_002947239.1| malonate decarboxylase, gamma subunit [Vario... 288 5e-76 >ref|YP_003776085.1| malonate decarboxylase gamma-subunit [Herbaspirillum seropedicae SmR1] gb|ADJ64177.1| malonate decarboxylase gamma-subunit protein [Herbaspirillum seropedicae SmR1] Length = 246 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MTATPTPGQVDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIA 60 MTATPTPGQVDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIA Sbjct: 1 MTATPTPGQVDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIA 60 Query: 61 LAQATAILDTVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRV 120 LAQATAILDTVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRV Sbjct: 61 LAQATAILDTVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRV 120 Query: 121 IGLVYDQALSGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVF 180 IGLVYDQALSGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVF Sbjct: 121 IGLVYDQALSGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVF 180 Query: 181 APGPENYLRMGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAVAH 240 APGPENYLRMGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAVAH Sbjct: 181 APGPENYLRMGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAVAH 240 Query: 241 DAPLNG 246 DAPLNG Sbjct: 241 DAPLNG 246 >ref|ZP_08273962.1| Malonate decarboxylase gamma subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF32568.1| Malonate decarboxylase gamma subunit [Oxalobacteraceae bacterium IMCC9480] Length = 233 Score = 361 bits (927), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 173/229 (75%), Positives = 198/229 (86%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 ++W+ LA LFP GH +TE++HFLSG+AQVDGHT+ V+GTT H PIGIEIALAQA IL Sbjct: 1 MEWQQLAAALFPAGHTVTETDHFLSGSAQVDGHTIAVIGTTNHAPIGIEIALAQAQTILT 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 VR P R I+ILVDTQGQRLRHRDEMLGINSYMAHLGKC+ELAR +GH+VI LVYDQAL Sbjct: 61 IVREQPQRPILILVDTQGQRLRHRDEMLGINSYMAHLGKCIELARCRGHKVIALVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSG++ADACYALP++TIRVMGLPAMARITKVP ERLTELAK NPVFAPGP+NYLR Sbjct: 121 SGGFITSGMMADACYALPESTIRVMGLPAMARITKVPLERLTELAKDNPVFAPGPDNYLR 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAV 238 MGG+ IW GDLAQ + +ALA+A+ +D RAALG ARGGR AQ VI+AV Sbjct: 181 MGGIEAIWEGDLAQQLVEALANANGSDRRAALGLARGGRLLAQPVIEAV 229 >ref|ZP_08273814.1| Malonate decarboxylase gamma subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF32714.1| Malonate decarboxylase gamma subunit [Oxalobacteraceae bacterium IMCC9480] Length = 231 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/230 (74%), Positives = 190/230 (82%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 +DW+ LA LFPQGHQIT S FLSG A V TV V+GTT HTPIG+EIALAQA A+L Sbjct: 1 MDWQTLATQLFPQGHQITASASFLSGNATVGDTTVAVIGTTDHTPIGVEIALAQARAVLA 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 TVR+ P R I+ILVDTQGQRLRHRDEMLGINSYMAHLGKC+ LAR+ GHRVIGLVYDQAL Sbjct: 61 TVRDFPQRPILILVDTQGQRLRHRDEMLGINSYMAHLGKCIALARQSGHRVIGLVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSGL+AD CYALP TIRVMGLPAMARITKVPEERL ELAK NPVFAPGPENY+R Sbjct: 121 SGGFITSGLMADDCYALPGTTIRVMGLPAMARITKVPEERLIELAKDNPVFAPGPENYVR 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAVA 239 MGG+ IW GDL+ + +ALA+AD D R+ LG RGGR+ A+ V DAVA Sbjct: 181 MGGLQAIWQGDLSARLVEALAAADPVDRRSTLGLERGGRKMARPVSDAVA 230 >ref|YP_001354250.1| malonate decarboxylase gamma subunit [Janthinobacterium sp. Marseille] gb|ABR89262.1| malonate decarboxylase gamma subunit [Janthinobacterium sp. Marseille] Length = 238 Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 164/229 (71%), Positives = 189/229 (82%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 + W+ LA LFPQGH I E ++FL GTA+VD TV V+GTTGHTPIG+EIALAQA AILD Sbjct: 1 MKWQTLATQLFPQGHDIVEHDYFLRGTAKVDQQTVAVIGTTGHTPIGVEIALAQANAILD 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 T+RN PGR +VILVDTQGQRLR+RDEMLGIN YMAHLGKC+++ARR+GH+VIGLVYDQAL Sbjct: 61 TMRNFPGRPLVILVDTQGQRLRYRDEMLGINRYMAHLGKCIDVARRRGHKVIGLVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSGL+ADACYALP+A IRVMGL AMARITKVP ERLTELA++NPVFAPG ENYL Sbjct: 121 SGGFITSGLMADACYALPEAEIRVMGLAAMARITKVPLERLTELAQANPVFAPGAENYLN 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAV 238 MGGV IW GDL + +AL AD+ D R+A G RGGR+ + V V Sbjct: 181 MGGVEAIWQGDLESCLARALQQADSIDHRSARGLERGGRKMSLPVTQLV 229 >ref|YP_004752366.1| malonate decarboxylase subunit gamma [Collimonas fungivorans Ter331] gb|AEK61543.1| Malonate decarboxylase gamma subunit [Collimonas fungivorans Ter331] Length = 240 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 166/233 (71%), Positives = 188/233 (80%), Gaps = 1/233 (0%) Query: 12 WRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILDTV 71 W+ LA TLFP GH + E + FL+GTAQV G TVTV+GTTGH IG+EIAL QA AIL TV Sbjct: 7 WKILAATLFPDGHTVVEQDDFLTGTAQVGGDTVTVIGTTGHAAIGVEIALLQAQAILATV 66 Query: 72 RNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQALSG 131 R+HP R+IVIL+DTQGQRLRHRDEMLGINSYMA L KC++LARR+ H++IGLVYDQALSG Sbjct: 67 RDHPQRSIVILIDTQGQRLRHRDEMLGINSYMAQLAKCIDLARRRQHKIIGLVYDQALSG 126 Query: 132 GFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLRMG 191 GFITSGL+AD CYALP+ATIRVMGL AMARITKVPE RLTELAKSNPVFAPG NYL+MG Sbjct: 127 GFITSGLMADGCYALPEATIRVMGLAAMARITKVPEARLTELAKSNPVFAPGAVNYLQMG 186 Query: 192 GVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAVA-HDAP 243 GV IW DLAQ + QAL A+ D+R+A G RGGR A V AV H +P Sbjct: 187 GVEAIWHADLAQQLVQALDQANPHDLRSAAGLQRGGRSQAWTVTQAVIDHASP 239 >ref|YP_001099770.1| malonate decarboxylase subunit MdcE [Herminiimonas arsenicoxydans] emb|CAL61643.1| Malonate decarboxylase gamma-subunit, MdcE [Herminiimonas arsenicoxydans] Length = 238 Score = 331 bits (848), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 160/229 (69%), Positives = 183/229 (79%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 ++W+ LA LFP+GH I E + FL G A + G TV+GTTGHTPIG+EIALAQA AIL+ Sbjct: 1 MEWQKLAAELFPEGHDIVERDFFLRGNATISGRVATVIGTTGHTPIGVEIALAQAHAILE 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 T+R PGR ++ILVDTQGQRLRHRDEMLGIN YMAHLGKC++ ARR GH VIGLVYDQAL Sbjct: 61 TMREFPGRPLIILVDTQGQRLRHRDEMLGINRYMAHLGKCIDRARRNGHPVIGLVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSGL+ADACYALP+A IRVMGLPAMARITKVPEE+L ELAKSNPVFAPG ENYL Sbjct: 121 SGGFITSGLMADACYALPEAEIRVMGLPAMARITKVPEEKLRELAKSNPVFAPGAENYLN 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAV 238 MGGV IW DLA + +AL D +D R+ G RGGR+ A+ VI V Sbjct: 181 MGGVEAIWHDDLAACLSRALQQTDASDRRSERGLERGGRKMARPVIQGV 229 >ref|YP_001022080.1| malonate decarboxylase subunit gamma [Methylibium petroleiphilum PM1] gb|ABM95845.1| malonate decarboxylase gamma subunit [Methylibium petroleiphilum PM1] Length = 233 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 148/232 (63%), Positives = 180/232 (77%), Gaps = 4/232 (1%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 +DW LA LF H I++ L G + DG+ +TV+GTT H PIG+ +AL QA +LD Sbjct: 1 MDWNTLATALFGADHGISQEGDVLRGNVRFDGNPLTVIGTTNHAPIGVRLALEQARVVLD 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 TV HPGR I++L+DTQGQ LR RDE+LGIN MAHLG ++ ARR+GHRV+GLVYDQAL Sbjct: 61 TVAQHPGRPILLLIDTQGQMLRRRDELLGINRAMAHLGMSIDFARRRGHRVLGLVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSGLIADAC ALP+A IRVM +PAMAR+TK+ E+RLTEL++SNPVFAPG ENY+ Sbjct: 121 SGGFITSGLIADACDALPEAEIRVMRIPAMARVTKISEDRLTELSRSNPVFAPGVENYVA 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWA----QRVIDA 237 MGGV +W+GDLA A+R+ALASA DVRAA GR RGGR+ A QRV+DA Sbjct: 181 MGGVRRLWTGDLAVALREALASASGEDVRAADGRTRGGRRLAAAVIQRVLDA 232 >ref|YP_001789116.1| malonate decarboxylase subunit gamma [Leptothrix cholodnii SP-6] gb|ACB32351.1| malonate decarboxylase, gamma subunit [Leptothrix cholodnii SP-6] Length = 233 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 156/232 (67%), Positives = 182/232 (78%), Gaps = 4/232 (1%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 +DW L Q LF H + FL GTAQ+DG T+ +VGTTGH PIG+ +AL QA A+LD Sbjct: 1 MDWHTLLQRLFGDAHAVQADGDFLHGTAQLDGATLAIVGTTGHAPIGVALALRQARAVLD 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 T+ HPGRAIV+L+DTQGQ+LR RDE+LGIN MAHLG C++ ARRQGHRVIGLVYDQAL Sbjct: 61 TLALHPGRAIVLLIDTQGQQLRRRDELLGINRAMAHLGCCIDQARRQGHRVIGLVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSGLIADACYALP+A IRVM +PAMAR+TK+ EERLT L+K NPVFAPG +NY+ Sbjct: 121 SGGFITSGLIADACYALPEAEIRVMRIPAMARVTKISEERLTALSKDNPVFAPGVQNYVA 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWA----QRVIDA 237 MGG+ +WSGDLA A+R ALA A DVRAA G RGGRQ A QRV+DA Sbjct: 181 MGGIRALWSGDLAAALRDALAHAPTDDVRAADGAERGGRQLAAAVVQRVLDA 232 >ref|YP_001562792.1| malonate decarboxylase subunit gamma [Delftia acidovorans SPH-1] ref|YP_004490202.1| malonate decarboxylase subunit gamma [Delftia sp. Cs1-4] gb|ABX34407.1| malonate decarboxylase, gamma subunit [Delftia acidovorans SPH-1] gb|AEF91847.1| malonate decarboxylase, gamma subunit [Delftia sp. Cs1-4] Length = 233 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 144/229 (62%), Positives = 173/229 (75%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 + W LA+ LF GHQI + FL G A DG T+ +VGTTGH PIG+ +ALAQA +L+ Sbjct: 1 MQWNTLAEHLFGPGHQIHANGDFLEGHAVFDGQTLAIVGTTGHAPIGVRLALAQARVVLE 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 TV HPGR IV+L+DTQGQ+LR DE+LGIN MAHLG C++LARR+GHRVIGLVYDQAL Sbjct: 61 TVGAHPGRPIVLLIDTQGQQLRRHDELLGINRAMAHLGTCIDLARRRGHRVIGLVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSGLIADACYALP+A IRVM +PAM+RITK+PE L L++SNPVFAPG NY+ Sbjct: 121 SGGFITSGLIADACYALPEAEIRVMRIPAMSRITKLPESLLNALSESNPVFAPGVGNYVA 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWAQRVIDAV 238 MGGV +W GDL A+R ALA + D+RA G RGGR+ A V+ V Sbjct: 181 MGGVRGLWQGDLQAALRDALAHSPREDMRALDGAERGGRKLAAEVVQRV 229 >ref|YP_002947239.1| malonate decarboxylase, gamma subunit [Variovorax paradoxus S110] gb|ACS21973.1| malonate decarboxylase, gamma subunit [Variovorax paradoxus S110] Length = 233 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 144/232 (62%), Positives = 174/232 (75%), Gaps = 4/232 (1%) Query: 10 VDWRALAQTLFPQGHQITESEHFLSGTAQVDGHTVTVVGTTGHTPIGIEIALAQATAILD 69 + W +L LF H + FL G + +TV+GTT H PIG+ +ALAQA A+LD Sbjct: 1 MQWNSLVTQLFGSFHGLRADGDFLQGEVIFEREPLTVIGTTNHAPIGVRLALAQARAVLD 60 Query: 70 TVRNHPGRAIVILVDTQGQRLRHRDEMLGINSYMAHLGKCVELARRQGHRVIGLVYDQAL 129 TVR HPGR I++L+DTQGQ+LR RDE+LGIN MAHLG ++LARR+GHRVIGLVYDQAL Sbjct: 61 TVRQHPGRPILLLIDTQGQQLRRRDELLGINRAMAHLGASIDLARRRGHRVIGLVYDQAL 120 Query: 130 SGGFITSGLIADACYALPDATIRVMGLPAMARITKVPEERLTELAKSNPVFAPGPENYLR 189 SGGFITSGLIADACYALP+A IRVM +PAMAR+TK+PE+RLTEL+KSNPVFAPG +NY+ Sbjct: 121 SGGFITSGLIADACYALPEAEIRVMRIPAMARVTKLPEDRLTELSKSNPVFAPGVQNYVA 180 Query: 190 MGGVAEIWSGDLAQAMRQALASADNADVRAALGRARGGRQWA----QRVIDA 237 MGGV +W+GDL +R ALA D RA G RGGR+ A QRV+DA Sbjct: 181 MGGVRALWTGDLQTRLRDALAHTPTEDRRARDGAERGGRRLAAAVVQRVLDA 232