BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0026.p (449 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776088.1| TRAP-type C4-dicarboxylate transport system ... 873 0.0 ref|YP_004752362.1| TRAP dicarboxylate transporter, DctM subunit... 806 0.0 ref|ZP_08276094.1| TRAP dicarboxylate transporter, DctM subunit,... 761 0.0 ref|YP_523099.1| TRAP dicarboxylate transporter subunit DctM [Rh... 719 0.0 ref|YP_287218.1| TRAP dicarboxylate transporter, DctM subunit [D... 676 0.0 ref|YP_001155412.1| TRAP dicarboxylate transporter, DctM subunit... 661 0.0 ref|YP_001991795.1| TRAP dicarboxylate transporter subunit DctM ... 643 0.0 ref|YP_001755578.1| TRAP dicarboxylate transporter subunit DctM ... 641 0.0 ref|YP_001205682.1| putative TRAP-type C4-dicarboxylate transpor... 637 e-180 ref|YP_532397.1| TRAP C4-dicarboxylate transport system permease... 633 e-179 >ref|YP_003776088.1| TRAP-type C4-dicarboxylate transport system large permease [Herbaspirillum seropedicae SmR1] gb|ADJ64180.1| TRAP-type C4-dicarboxylate transport system, large permease component protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/449 (100%), Positives = 449/449 (100%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT Sbjct: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL Sbjct: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL Sbjct: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF Sbjct: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 LALMFLAVLLLCMFPGIATLLPDLLMGAK Sbjct: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 >ref|YP_004752362.1| TRAP dicarboxylate transporter, DctM subunit [Collimonas fungivorans Ter331] gb|AEK61539.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Collimonas fungivorans Ter331] Length = 449 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/449 (90%), Positives = 430/449 (95%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MSPL LG LYG+VTI+VMCSGMPIAFALGVVAT FMYFFMP SSLDTITQNVYEEIAS+T Sbjct: 1 MSPLALGALYGIVTIIVMCSGMPIAFALGVVATSFMYFFMPASSLDTITQNVYEEIASVT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIG+SPAG+DLYSAIHAWL+KVPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGRSPAGRDLYSAIHAWLSKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVA+EQSLGRLFLAG+ Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVASEQSLGRLFLAGV 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPGVLLV+LFAGYAVYRARKEYRLAH +YS GG KSAYLDDEHFT AQKVEMLPRVLPFL Sbjct: 181 GPGVLLVILFAGYAVYRARKEYRLAHEIYSQGGIKSAYLDDEHFTFAQKVEMLPRVLPFL 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 ILLIGVM+ALYGG ATPSETAGLGALLA+VLIAVVYR+++PR++ PFL+STIKES MLLL Sbjct: 241 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYRMWRPRDLMPFLNSTIKESCMLLL 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAAQWVV LHLSKWLLLAVIL MVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVALHLSKWLLLAVILLMVIVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPL+ AGFDLIWFG+VMTVVMEMGLIHPPVGLNLFVIKNIAPDI L DVIKGT+PF Sbjct: 361 PIILPPLREAGFDLIWFGVVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSDVIKGTLPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 L LMFLA++LLC+FPGI T LPDLLMGA+ Sbjct: 421 LLLMFLAIILLCLFPGIVTGLPDLLMGAR 449 >ref|ZP_08276094.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30441.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 449 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/449 (86%), Positives = 416/449 (92%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS LTLG++YGV T+VVM SGMPIAFALGVVA FMYFFMP SSLDT+TQNVYEE+ASIT Sbjct: 1 MSELTLGLMYGVATLVVMFSGMPIAFALGVVAVSFMYFFMPASSLDTVTQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIGKSPAGKDLYSAIH WL+KVPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHTWLHKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPGVLLV LF+GYAVYRARKEYRLAHA + G SAYL+ EHFTLAQKVEMLPRVLPF+ Sbjct: 181 GPGVLLVGLFSGYAVYRARKEYRLAHAAFLNNGTASAYLEVEHFTLAQKVEMLPRVLPFI 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 +LL+GVMVALYGG ATPSETAGLGA+LALVLIA+VY I+KPR++AP LSSTIKES MLLL Sbjct: 241 VLLLGVMVALYGGYATPSETAGLGAMLALVLIAIVYGIWKPRDLAPILSSTIKESSMLLL 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAAQWVV + LSKW+LL VIL MV+V GFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVAMELSKWVLLTVILLMVVVFGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFG+VMT+VMEMGLIHPPVGLN+FVIKNIAPDI L DVI G +PF Sbjct: 361 PIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNIAPDIPLKDVIVGVMPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 + LMF+AV+LLC+FP IAT LP +LMG K Sbjct: 421 VGLMFVAVILLCVFPEIATGLPAMLMGVK 449 >ref|YP_523099.1| TRAP dicarboxylate transporter subunit DctM [Rhodoferax ferrireducens T118] gb|ABD69568.1| TRAP dicarboxylate transporter- DctM subunit [Rhodoferax ferrireducens T118] Length = 449 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/449 (82%), Positives = 411/449 (91%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS L++G+ YG VT++VM SGMPIAFALG VA FMYFFMP SSLDT+TQNVYEE+ASIT Sbjct: 1 MSELSIGLSYGAVTLLVMFSGMPIAFALGTVAVTFMYFFMPASSLDTVTQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFI+KGAAIGKSPAG+DLYSAIHAWL+KVPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFIMKGAAIGKSPAGQDLYSAIHAWLHKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMR+RGYSPGFAAGIIAAGGTLGILLPPSI MILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRKRGYSPGFAAGIIAAGGTLGILLPPSIVMILYAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPG+LLV LFAGYAV RAR+EY+ A +Y GG KSAYL +EHFTLAQKVEMLPRVLPF+ Sbjct: 181 GPGLLLVALFAGYAVVRARQEYKQALVIYQQGGPKSAYLIEEHFTLAQKVEMLPRVLPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 ILLIGVMVALYGGLATPSETAGLG L+AL LIAVVY I++P+++AP L+ST+KES ML+L Sbjct: 241 ILLIGVMVALYGGLATPSETAGLGGLMALGLIAVVYGIWRPKDVAPILTSTLKESTMLML 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMS+LHISQ AAQW+V + LSKW+LL VIL MVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSHLHISQGAAQWIVAMQLSKWVLLGVILLMVIVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFG+VMT+VMEMGLIHPPVGLN+FVIKN+APDI L DVI G +PF Sbjct: 361 PIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNVAPDIPLKDVIWGVMPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 + LMF AV LLC+FPGI T LP+L+MG K Sbjct: 421 VGLMFGAVFLLCLFPGIVTGLPNLVMGVK 449 >ref|YP_287218.1| TRAP dicarboxylate transporter, DctM subunit [Dechloromonas aromatica RCB] gb|AAZ48748.1| TRAP dicarboxylate transporter, DctM subunit [Dechloromonas aromatica RCB] Length = 450 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/447 (76%), Positives = 393/447 (87%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 M+ ++G+LYG+ T+ VM SG+PIAFALG +A FM FMP ++ DTITQNV+EE+A+IT Sbjct: 1 MAESSIGILYGLGTLAVMFSGIPIAFALGSIAVLFMLLFMPAAATDTITQNVFEEMANIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIG+S AG DLY AIHAW++K+PGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGRSRAGADLYLAIHAWMHKIPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIG AGIPEMR RGYSPGFAAGIIAAGGTLGILLPPSITMIL+AVAAEQSLGRLFLAGI Sbjct: 121 SAIGGAGIPEMRARGYSPGFAAGIIAAGGTLGILLPPSITMILFAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 PG+LLV LFAGYAV+R + EY A V+ +GGAKSAYLD+ T A K MLPRV+PF+ Sbjct: 181 FPGLLLVFLFAGYAVFRFKVEYNSALDVWHSGGAKSAYLDEMRMTRADKTRMLPRVIPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 +LLIGVM+ALYGG ATPSETAGLG +LAL LIA +Y +++P ++ P L+ST+KES ML+ Sbjct: 241 LLLIGVMLALYGGYATPSETAGLGGILALALIAGIYGVWRPSQLKPILNSTLKESTMLMF 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAA+W+V +HLSKWLLLA IL V++LGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAEWIVAMHLSKWLLLAAILIFVVILGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLN+FVIKN+APDI L D++ G PF Sbjct: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNIFVIKNVAPDIPLKDIVWGVFPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMG 447 + LMFLAV+LLC+FPGIAT LPD++MG Sbjct: 421 VGLMFLAVILLCIFPGIATWLPDVVMG 447 >ref|YP_001155412.1| TRAP dicarboxylate transporter, DctM subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP33848.1| TRAP dicarboxylate transporter, DctM subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 450 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/448 (73%), Positives = 388/448 (86%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS LT+G+L+ VVT+++M SG+ IAFALG+VA FMYFFMP SSLDT+ QNVYEE++SIT Sbjct: 1 MSILTIGLLFAVVTLLIMFSGISIAFALGIVAIIFMYFFMPASSLDTVAQNVYEEMSSIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 L+SIPLFILKGAAIG+S AGKDLY A+H W+ KVPGGLG+ANVFACALFAAMAGSSPATC Sbjct: 61 LMSIPLFILKGAAIGRSRAGKDLYDALHVWMGKVPGGLGVANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMR+RGYSPGFAAGIIAAGGTLGILLPPSITMILY+VAAEQSLGRLFLA I Sbjct: 121 SAIGSAGIPEMRKRGYSPGFAAGIIAAGGTLGILLPPSITMILYSVAAEQSLGRLFLAAI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPGV+LV+ F+GY +YR RKEY A+ Y S LD + +T+ QK+ LPRVLPFL Sbjct: 181 GPGVMLVIFFSGYTIYRFRKEYSTAYEAYELNKTPSPILDRQTYTMQQKMSSLPRVLPFL 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 ILLIGVMVALYGG ATP+ETAGLGA+ A +LIAV+Y++++ +++ P L TI+ES ML+ Sbjct: 241 ILLIGVMVALYGGYATPAETAGLGAVFAFLLIAVIYKMWRFKDLYPLLDVTIRESAMLMF 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLL++ VMSYLH+SQSAAQ +VDL S+W+LLA IL MVIVLGFFLPPVSIILMT+ Sbjct: 301 IIGMSLLFANVMSYLHLSQSAAQAIVDLGASRWVLLAAILVMVIVLGFFLPPVSIILMTS 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PI LPPL+AAGFDLIWFG+VMT+VME GLIHPPVGLN+FVIKNIAPDI L ++I G +PF Sbjct: 361 PIFLPPLRAAGFDLIWFGVVMTIVMETGLIHPPVGLNIFVIKNIAPDITLTEIINGVLPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMGA 448 + +M L+V+LLC+FPGIAT L D +MGA Sbjct: 421 VVIMLLSVVLLCVFPGIATGLSDWVMGA 448 >ref|YP_001991795.1| TRAP dicarboxylate transporter subunit DctM [Rhodopseudomonas palustris TIE-1] gb|ACF01320.1| TRAP dicarboxylate transporter, DctM subunit [Rhodopseudomonas palustris TIE-1] Length = 452 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/449 (74%), Positives = 392/449 (87%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 M+ L +G+ YG+ T+ M SGMPIAFALG VA FM +MP +SLDT+TQNVYEE+ASIT Sbjct: 1 MTVLGIGISYGLATLAAMFSGMPIAFALGAVALVFMAIYMPHASLDTVTQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIGKS AG+DLYSA+HAWL++VPGGLG+ANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSRAGQDLYSALHAWLHRVPGGLGVANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMR+RGYS GFAAGIIAAGGTLGILLPPSITMIL+AVAAE+SLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRKRGYSGGFAAGIIAAGGTLGILLPPSITMILFAVAAEKSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPG+LLV LF YAV R RKEY A A Y A G SA L DE FT+AQ+ LPRVLPF+ Sbjct: 181 GPGLLLVTLFGIYAVIRFRKEYATAKAAYEATGQTSAILTDEKFTMAQRFGALPRVLPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 ILL GVM+ALYGG ATPSETAGLG LLAL+LIA++Y ++KP +++P ++ST++ES ML++ Sbjct: 241 ILLTGVMIALYGGYATPSETAGLGGLLALLLIALIYGVWKPSDLSPIMTSTVRESTMLMM 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAA+ +V + L +W LLA IL +V+VLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAEAIVAMQLPRWGLLAAILALVVVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPL+AAGFD+IWFG+VMT+VMEMGLIHPPVGLN+FVI+N+APDI L +VI GT+PF Sbjct: 361 PIILPPLRAAGFDIIWFGVVMTIVMEMGLIHPPVGLNIFVIRNVAPDIPLSEVIWGTLPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 + LM AVLLLC+ PGI+T LPDL+MG + Sbjct: 421 VLLMMFAVLLLCLVPGISTWLPDLVMGPE 449 >ref|YP_001755578.1| TRAP dicarboxylate transporter subunit DctM [Methylobacterium radiotolerans JCM 2831] gb|ACB24895.1| TRAP dicarboxylate transporter, DctM subunit [Methylobacterium radiotolerans JCM 2831] Length = 450 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/446 (72%), Positives = 378/446 (84%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS +G LY T+ M SG+PIAFALG VA FM FMP +SLDT+ QNVYEE+ASIT Sbjct: 1 MSTAAIGFLYAGATLGAMLSGIPIAFALGFVALTFMVAFMPGASLDTVAQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIG+S AG+DLY+A+HAW++++PGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGRSKAGQDLYTAMHAWMHRIPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMR+RGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRKRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPG+LLV LFA +++ R R EY A GG S L DE +++AQ+ LPRVLPF+ Sbjct: 181 GPGLLLVGLFAAWSMVRFRSEYAAAKEALERGGPASPILADEQYSMAQRFSTLPRVLPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 +LL GVMVALYGG ATPSETAGLG L+AL LIA +Y +++ R++ P L++T++ES ML+L Sbjct: 241 VLLTGVMVALYGGYATPSETAGLGGLMALALIAAIYGVWRFRDVTPILTATLRESTMLML 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLY+YVMSYLHISQSAA +V + LS W+LL IL +VI LGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYAYVMSYLHISQSAAAAIVAMQLSPWVLLVTILALVIALGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDL+WFG+VMT+ MEMGLIHPPVGLN+FVIKNIAPDI L D+I GT+PF Sbjct: 361 PIILPPLKAAGFDLVWFGVVMTITMEMGLIHPPVGLNIFVIKNIAPDIPLSDIIWGTLPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLM 446 + LM +A+L+LC+ PGIA LPDLL+ Sbjct: 421 VILMAVAILILCLVPGIAMWLPDLLL 446 >ref|YP_001205682.1| putative TRAP-type C4-dicarboxylate transport system large permease component DctM [Bradyrhizobium sp. ORS 278] emb|CAL77456.1| putative TRAP-type C4-dicarboxylate transporter, DctM subunit; putative membrane component [Bradyrhizobium sp. ORS 278] Length = 452 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 327/447 (73%), Positives = 384/447 (85%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS +G+ YG+ T+ M +GMPIAFALG VA FM +MP +SLDT+TQNVYEE+ASIT Sbjct: 1 MSVFGIGIAYGLSTLFAMFAGMPIAFALGAVAVVFMAIYMPTASLDTVTQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIG+S AG+DLYSA+HAWL++VPGGLG+ANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGRSRAGQDLYSALHAWLHRVPGGLGVANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMR+RGYS GFAAGIIAAGGTLGILLPPSITMIL+A+AAE+SLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRKRGYSGGFAAGIIAAGGTLGILLPPSITMILFAIAAEKSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPG+LLV LF YAV R R+EY A A Y GA S L + FT+AQ+ +LPRV+PF+ Sbjct: 181 GPGLLLVTLFGVYAVVRFRQEYAQAKAAYEKSGAWSDILTKDDFTMAQRFSVLPRVIPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 +LL GVMVALYGG ATPSETAGLG +LALVLIA++YR++ P ++AP + +T++ES ML+L Sbjct: 241 LLLTGVMVALYGGFATPSETAGLGGILALVLIAIIYRVWTPSDLAPIMRATLRESTMLML 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQS A+ +V +HL +W LL IL MV+VLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSVAESIVAMHLPRWELLFAILLMVVVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPL+AA FD+IWFG+VMT+VMEMGLIHPPVGLN+FVI+N+APDI L DVI GT+PF Sbjct: 361 PIILPPLRAANFDIIWFGVVMTIVMEMGLIHPPVGLNIFVIRNVAPDIPLRDVIWGTLPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMG 447 + LM AVLLLC P I+T LP+L+MG Sbjct: 421 VLLMMAAVLLLCFVPQISTGLPNLVMG 447 >ref|YP_532397.1| TRAP C4-dicarboxylate transport system permease DctM [Rhodopseudomonas palustris BisB18] gb|ABD88078.1| TRAP dicarboxylate transporter- DctM subunit [Rhodopseudomonas palustris BisB18] Length = 452 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 333/449 (74%), Positives = 384/449 (85%) Query: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS L +G+ YGV T++ M SGMPIAFALG VA FM +MP +SLDT+TQNVYEE+ASIT Sbjct: 1 MSVLGIGISYGVATLLAMFSGMPIAFALGAVAVLFMAIYMPAASLDTVTQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIGKS AG+DLYSA+HAWLN+VPGGLG+ANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSRAGQDLYSALHAWLNRVPGGLGVANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMR+RGYS GFAAGIIAAGGTLGILLPPSITMIL+AVAAE+SLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRKRGYSGGFAAGIIAAGGTLGILLPPSITMILFAVAAEKSLGRLFLAGI 180 Query: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPG+LLVLLF YAV+R RKEY A +Y G + L + FT+AQ+ LPRV PF+ Sbjct: 181 GPGLLLVLLFGSYAVFRFRKEYAAASRLYEQTGVDAPILARDKFTMAQRFNALPRVAPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 ILL GVM+ALYGG ATPSETAGLG LLAL LIA++Y +++P ++AP L +TI+ES ML++ Sbjct: 241 ILLTGVMIALYGGYATPSETAGLGGLLALALIALIYGVWRPTDLAPILQATIRESTMLMM 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQS A+ +V + L +W LLA IL MV+VLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSVAESIVAMQLPRWELLAAILVMVVVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPL+AA FD+IWFGIVMT+VMEMGLIHPPVGLN+FVI+N+APDI L +VI GT+PF Sbjct: 361 PIILPPLRAANFDIIWFGIVMTIVMEMGLIHPPVGLNIFVIRNVAPDIPLSEVIWGTLPF 420 Query: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 + LM AVLLLC P IAT PDL+MG + Sbjct: 421 VLLMMFAVLLLCFVPQIATGFPDLVMGPE 449