BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0025.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776089.1| TRAP-type C4-dicarboxylate transport system ... 381 e-104 ref|YP_004752361.1| Tripartite ATP-independent periplasmic trans... 254 5e-66 ref|ZP_08276093.1| TRAP dicarboxylate transporter, DctQ subunit,... 233 8e-60 ref|YP_523098.1| tripartite ATP-independent periplasmic transpor... 201 4e-50 ref|YP_287219.1| tripartite ATP-independent periplasmic transpor... 196 1e-48 ref|YP_001755577.1| tripartite ATP-independent periplasmic trans... 190 9e-47 ref|YP_001526216.1| C4-dicarboxylate transport precursor [Azorhi... 187 7e-46 ref|YP_001638859.1| tripartite ATP-independent periplasmic trans... 185 2e-45 ref|YP_002420453.1| tripartite ATP-independent periplasmic trans... 185 3e-45 ref|YP_002962414.1| tripartite ATP-independent periplasmic trans... 184 5e-45 >ref|YP_003776089.1| TRAP-type C4-dicarboxylate transport system small permease [Herbaspirillum seropedicae SmR1] gb|ADJ64181.1| TRAP-type C4-dicarboxylate transport system, small permease component protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/192 (98%), Positives = 189/192 (98%) Query: 1 MSHGFEMPGAAATRPEVPASAPVAWLAAFLRGYHRVAVFLGMIALLVTSCILTYSVVVRY 60 MSHGFEMPGAAATRPEVPASAPVAWL AFLRGYHRVAVFLGMIALLVTSCILTYSVVVRY Sbjct: 1 MSHGFEMPGAAATRPEVPASAPVAWLGAFLRGYHRVAVFLGMIALLVTSCILTYSVVVRY 60 Query: 61 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMFIVDVVS 120 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPL NRVRMFIVDVVS Sbjct: 61 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLANRVRMFIVDVVS 120 Query: 121 LLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRIT 180 LLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRIT Sbjct: 121 LLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRIT 180 Query: 181 GTVAATPAGGAQ 192 GTV ATPAGGAQ Sbjct: 181 GTVPATPAGGAQ 192 >ref|YP_004752361.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Collimonas fungivorans Ter331] gb|AEK61538.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Collimonas fungivorans Ter331] Length = 197 Score = 254 bits (649), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/182 (67%), Positives = 145/182 (79%), Gaps = 1/182 (0%) Query: 1 MSHGFE-MPGAAATRPEVPASAPVAWLAAFLRGYHRVAVFLGMIALLVTSCILTYSVVVR 59 MSHGF+ P A P +P + VA LA L +H++A++L M AL++TS I+TYSVV R Sbjct: 1 MSHGFDPKPNAGPALPAMPDNPVVAVLAGILERFHKLALYLSMTALMLTSLIMTYSVVAR 60 Query: 60 YFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMFIVDVV 119 YFFH PTDWQD+A+VFMLVGVIFLC+ Y QSLRGHIGIEAL+ +L N VR+ +VD+V Sbjct: 61 YFFHVPTDWQDDATVFMLVGVIFLCAGYAQSLRGHIGIEALSSVLPAGVNAVRLLLVDLV 120 Query: 120 SLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRI 179 S LFC FF+WKSW LFHEAW EGQTTSSTFAPPLWIPYSLMALGMT+LTLQLL QVL R+ Sbjct: 121 SFLFCGFFSWKSWTLFHEAWSEGQTTSSTFAPPLWIPYSLMALGMTVLTLQLLAQVLARL 180 Query: 180 TG 181 T Sbjct: 181 TD 182 >ref|ZP_08276093.1| TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30440.1| TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 233 bits (595), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 116/182 (63%), Positives = 139/182 (76%), Gaps = 2/182 (1%) Query: 1 MSHGFEMPGAAATRPEVPASAPVAWLAAFLRGYHRVAVFLGMIALLVTSCILTYSVVVRY 60 MSHGFE+ P VP + VA LA L +++ + L M AL++T+ +LTYSVV RY Sbjct: 1 MSHGFELEPVKG--PAVPDNPVVAKLAKALDAFNQGLLMLSMGALILTALVLTYSVVSRY 58 Query: 61 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMFIVDVVS 120 FF PTDWQDEASVFMLVGV F C AYVQ+LRGHIGIEALA +L P N RM VDV+S Sbjct: 59 FFKLPTDWQDEASVFMLVGVTFFCCAYVQALRGHIGIEALASILPPRVNAARMMFVDVMS 118 Query: 121 LLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRIT 180 LLFC FF+WKSWALFHEA+VEG TTSSTFAPPLWIPY +MA GM++L+LQ+ +QVL+R+T Sbjct: 119 LLFCLFFSWKSWALFHEAFVEGFTTSSTFAPPLWIPYGMMAFGMSLLSLQIAMQVLIRVT 178 Query: 181 GT 182 Sbjct: 179 ND 180 >ref|YP_523098.1| tripartite ATP-independent periplasmic transporter DctQ [Rhodoferax ferrireducens T118] gb|ABD69567.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Rhodoferax ferrireducens T118] Length = 165 Score = 201 bits (511), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 92/125 (73%), Positives = 105/125 (84%) Query: 40 LGMIALLVTSCILTYSVVVRYFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEA 99 L M AL++TS +LTYSV RYFF TDWQDEASVFMLVG IF+C+AYVQS+RGH+GIEA Sbjct: 16 LSMAALVLTSAVLTYSVATRYFFKTATDWQDEASVFMLVGAIFMCTAYVQSMRGHVGIEA 75 Query: 100 LAGMLSPLTNRVRMFIVDVVSLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSL 159 LA +L NRVR +VD+VS LFC+FF WKSW LFHEAW EGQTTSS+FAPPLWIPYSL Sbjct: 76 LATLLPASVNRVRATVVDIVSTLFCSFFAWKSWTLFHEAWAEGQTTSSSFAPPLWIPYSL 135 Query: 160 MALGM 164 MA+GM Sbjct: 136 MAVGM 140 >ref|YP_287219.1| tripartite ATP-independent periplasmic transporter DctQ [Dechloromonas aromatica RCB] gb|AAZ48749.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Dechloromonas aromatica RCB] Length = 183 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/164 (58%), Positives = 116/164 (70%), Gaps = 1/164 (0%) Query: 1 MSHGFEMPGAAATRPEVPASAPVAWLAAFLRGYHRVAVFLGMIALLVTSCILTYSVVVRY 60 MSHGFE+ GA PE+P + + + + G H +FL ALL + IL SV +RY Sbjct: 1 MSHGFEIEGAVKA-PEIPETGILGGINRVMTGLHTAIMFLSSGALLGAALILCSSVFLRY 59 Query: 61 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMFIVDVVS 120 F PTDWQDE SVF+LVG F+C+ YVQS RGHIGIEAL G+L PL NR+R+ D+VS Sbjct: 60 FLKIPTDWQDEMSVFLLVGATFMCAGYVQSQRGHIGIEALGGLLPPLANRLRLLFCDLVS 119 Query: 121 LLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGM 164 LLFCAFF+WKS LFHEAWV+GQTTSS++APPL IPY M GM Sbjct: 120 LLFCAFFSWKSILLFHEAWVDGQTTSSSWAPPLAIPYGFMTAGM 163 >ref|YP_001755577.1| tripartite ATP-independent periplasmic transporter DctQ [Methylobacterium radiotolerans JCM 2831] gb|ACB24894.1| Tripartite ATP-independent periplasmic transporter DctQ component [Methylobacterium radiotolerans JCM 2831] Length = 230 Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 93/183 (50%), Positives = 126/183 (68%), Gaps = 13/183 (7%) Query: 1 MSHGFEMPGAA-----ATRPEVPASAPVAWLAAFLRG---YHRVAVFLGMIALLVTSCIL 52 MSHGF+ AA A P +P L AF RG +RV + LG + L+ +L Sbjct: 1 MSHGFDAATAAPEARGAEEPRLPG-----LLGAFDRGMRLLNRVILALGGLCLVAACLVL 55 Query: 53 TYSVVVRYFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVR 112 T+SVVVRY +PT+WQDE +VF+++G FL +A VQ+ RGH+ IEAL G+L P NRVR Sbjct: 56 THSVVVRYLLKEPTEWQDEMAVFLIIGATFLSAAGVQAKRGHVAIEALTGLLPPAANRVR 115 Query: 113 MFIVDVVSLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLL 172 + + D+VSL FC FF WKSW+L HEAWV+GQ + ST+ PPLWIPY+LM++GM++L LQ + Sbjct: 116 LLLADLVSLAFCLFFAWKSWSLDHEAWVDGQVSQSTWGPPLWIPYTLMSVGMSLLCLQFV 175 Query: 173 VQV 175 +Q+ Sbjct: 176 LQI 178 >ref|YP_001526216.1| C4-dicarboxylate transport precursor [Azorhizobium caulinodans ORS 571] dbj|BAF89298.1| C4-dicarboxylate transport precursor [Azorhizobium caulinodans ORS 571] Length = 192 Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 94/187 (50%), Positives = 127/187 (67%), Gaps = 8/187 (4%) Query: 2 SHGFEMPGAAATRPEVPASAPVAW---LAAFLRG----YHRVAVFLGMIALLVTSCILTY 54 +HGFE+P A A+ PE A + L L+G +R+ + +AL+ S IL+Y Sbjct: 3 AHGFELPSAGAS-PEARALSAAQAAHPLLGVLQGALTFVNRIILIGASVALIAASVILSY 61 Query: 55 SVVVRYFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMF 114 SVV+R FH PT WQDEASVF+LVG F+ +AYVQ RGH+ IEAL +L P N+ R+ Sbjct: 62 SVVIRLLFHAPTYWQDEASVFLLVGATFMTAAYVQGRRGHVAIEALTALLPPAVNKARLL 121 Query: 115 IVDVVSLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQ 174 +VD+ S FCAFFTWKS+ L HEAWVEG +SST+APP+WIPYS+M LGM +L++Q+ +Q Sbjct: 122 LVDLASFAFCAFFTWKSYVLLHEAWVEGHVSSSTWAPPMWIPYSVMTLGMGLLSVQIALQ 181 Query: 175 VLVRITG 181 + + G Sbjct: 182 FICALAG 188 >ref|YP_001638859.1| tripartite ATP-independent periplasmic transporter DctQ [Methylobacterium extorquens PA1] gb|ABY29788.1| Tripartite ATP-independent periplasmic transporter DctQ component [Methylobacterium extorquens PA1] Length = 241 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/180 (50%), Positives = 121/180 (67%), Gaps = 7/180 (3%) Query: 1 MSHGFEMPGAA-----ATRPEVPASAPVAWLAAFLRGYHRVAVFLGMIALLVTSCILTYS 55 MSH F+ AA A P +P V + R + V + G +AL+ +L+YS Sbjct: 1 MSHAFDAASAASETKRAEEPRIPGLLGV--IERTTRRLNHVILVCGGVALVAACLVLSYS 58 Query: 56 VVVRYFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMFI 115 V+ RY FH+PT+WQDE +VF++VG FL +A VQ+ RGH+ IEAL G+LSP NRVR+ Sbjct: 59 VLTRYVFHEPTEWQDETAVFLIVGATFLSAAGVQAKRGHVAIEALTGLLSPGVNRVRLIF 118 Query: 116 VDVVSLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQV 175 VD+VSL F FF WKSW+LFHEAW +GQ + ST+ PPLWIPY LMA GM++L +Q ++Q+ Sbjct: 119 VDIVSLAFVTFFAWKSWSLFHEAWEDGQISQSTWGPPLWIPYLLMAAGMSLLAVQFVLQI 178 >ref|YP_002420453.1| tripartite ATP-independent periplasmic transporter DctQ component [Methylobacterium chloromethanicum CM4] gb|ACK82525.1| Tripartite ATP-independent periplasmic transporter DctQ component [Methylobacterium chloromethanicum CM4] Length = 241 Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 89/180 (49%), Positives = 121/180 (67%), Gaps = 7/180 (3%) Query: 1 MSHGFEMPGAA-----ATRPEVPASAPVAWLAAFLRGYHRVAVFLGMIALLVTSCILTYS 55 MSH F+ AA A P +P + + R + V + G +AL+ +L+YS Sbjct: 1 MSHAFDAASAASETKRAEEPRIPGL--LGMIERTTRRLNHVILVCGGVALVAACLVLSYS 58 Query: 56 VVVRYFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMFI 115 V+ RY FH+PT+WQDE +VF++VG FL +A VQ+ RGH+ IEAL G+LSP NRVR+ Sbjct: 59 VLTRYVFHEPTEWQDETAVFLIVGATFLSAAGVQAKRGHVAIEALTGLLSPGVNRVRLIF 118 Query: 116 VDVVSLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQV 175 VD+VSL F FF WKSW+LFHEAW +GQ + ST+ PPLWIPY LMA GM++L +Q ++Q+ Sbjct: 119 VDIVSLAFVTFFAWKSWSLFHEAWEDGQISQSTWGPPLWIPYLLMAAGMSLLAVQFVLQI 178 >ref|YP_002962414.1| tripartite ATP-independent periplasmic transporter permease (DctQ) subunit; membrane protein [methylobacterium extorquens AM1] gb|ACS39137.1| putative tripartite ATP-independent periplasmic transporter, permease (DctQ) subunit; putative membrane protein [Methylobacterium extorquens AM1] Length = 241 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 89/180 (49%), Positives = 121/180 (67%), Gaps = 7/180 (3%) Query: 1 MSHGFEMPGAA-----ATRPEVPASAPVAWLAAFLRGYHRVAVFLGMIALLVTSCILTYS 55 MSH F+ AA A P +P V + R + + + G +AL+ +L+YS Sbjct: 1 MSHAFDAASAASETKRAEEPRIPGLLGV--IERTTRRLNHLILVCGGVALVAACLVLSYS 58 Query: 56 VVVRYFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLTNRVRMFI 115 V+ RY FH+PT+WQDE +VF++VG FL +A VQ+ RGH+ IEAL G+LSP NRVR+ Sbjct: 59 VLTRYVFHEPTEWQDETAVFLIVGATFLSAAGVQAKRGHVAIEALTGLLSPGVNRVRLIF 118 Query: 116 VDVVSLLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQV 175 VD+VSL F FF WKSW+LFHEAW +GQ + ST+ PPLWIPY LMA GM++L +Q ++Q+ Sbjct: 119 VDIVSLAFVTFFAWKSWSLFHEAWDDGQISQSTWGPPLWIPYLLMAAGMSLLAVQFVLQI 178