BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0024.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776090.1| TRAP-type C4-dicarboxylate transport system ... 583 e-164 ref|YP_004752360.1| TRAP transporter solute receptor [Collimonas... 549 e-154 ref|ZP_08276092.1| TRAP transporter solute receptor, unknown sub... 544 e-153 ref|YP_523097.1| TRAP dicarboxylate transporter subunit DctP [Rh... 527 e-147 ref|YP_287220.1| TRAP dicarboxylate transporter- DctP subunit [D... 507 e-141 ref|YP_001240024.1| putative TRAP-type C4-dicarboxylate transpor... 466 e-129 ref|YP_001205684.1| putative TRAP-type C4-dicarboxylate transpor... 466 e-129 ref|NP_771070.1| hypothetical protein bll4430 [Bradyrhizobium ja... 459 e-127 ref|NP_947885.1| TRAP dicarboxylate family transporter subunit D... 457 e-126 ref|YP_001991797.1| TRAP dicarboxylate transporter subunit DctP ... 457 e-126 >ref|YP_003776090.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64182.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 287/288 (99%), Positives = 288/288 (100%) Query: 53 VRMFAQQVSERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNI 112 +RMFAQQVSERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNI Sbjct: 1 MRMFAQQVSERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNI 60 Query: 113 GLMPGLVTSYQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAK 172 GLMPGLVTSYQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAK Sbjct: 61 GLMPGLVTSYQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAK 120 Query: 173 GMKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKA 232 GMKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKA Sbjct: 121 GMKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKA 180 Query: 233 LTTGRDKAYWYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVY 292 LTTGRDKAYWYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVY Sbjct: 181 LTTGRDKAYWYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVY 240 Query: 293 QKAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 340 QKAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL Sbjct: 241 QKAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 288 >ref|YP_004752360.1| TRAP transporter solute receptor [Collimonas fungivorans Ter331] gb|AEK61537.1| TRAP transporter solute receptor, unknown substrate 4 [Collimonas fungivorans Ter331] Length = 329 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 264/321 (82%), Positives = 290/321 (90%), Gaps = 3/321 (0%) Query: 9 FLGTLAAAPLASAVPSVWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQVSERTKGAL 68 LG LA+ P S + SVWAQ+ +LKISHQFPGGT++EGDFRDRL RMFA +V +R+ L Sbjct: 1 MLGALASTPFWS-MSSVWAQSGALKISHQFPGGTISEGDFRDRLTRMFAAEVGKRS--GL 57 Query: 69 KFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQQGAAW 128 KFEIYPGSSLMKTN+QFSA+RKGALD SLVPLNYAGGEVPE NIGLMPGLVTSY+QGAAW Sbjct: 58 KFEIYPGSSLMKTNSQFSALRKGALDFSLVPLNYAGGEVPEVNIGLMPGLVTSYEQGAAW 117 Query: 129 KNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSREMDLILK 188 KN+EVGKEL+R+L EKGVIIVSWIWQAGGVASRGKPI+DPSDAKG+KVRGGSREMDLILK Sbjct: 118 KNSEVGKELSRILLEKGVIIVSWIWQAGGVASRGKPIIDPSDAKGLKVRGGSREMDLILK 177 Query: 189 EAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYWYMFEPL 248 EAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTS +SFRLEEV+K+LT+GRDKAYWYM EPL Sbjct: 178 EAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSLISFRLEEVSKSLTSGRDKAYWYMLEPL 237 Query: 249 MISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVDLNAEVVK 308 MISKA F+RL K+QQ +MAVGAEMEQFAT AA+ DD VA VYQKAGAKVVDLNA VK Sbjct: 238 MISKATFDRLTKEQQVAVMAVGAEMEQFATNAARLDDSGVAAVYQKAGAKVVDLNAATVK 297 Query: 309 KWQDIARNTAWKDFAARNANC 329 KWQDIARNTAWKD+AARN NC Sbjct: 298 KWQDIARNTAWKDYAARNDNC 318 >ref|ZP_08276092.1| TRAP transporter solute receptor, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30439.1| TRAP transporter solute receptor, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 339 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 258/340 (75%), Positives = 296/340 (87%), Gaps = 1/340 (0%) Query: 1 MSAFTRRQFLGTLAAAPLASAVPSVWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQV 60 M + TRR LG +AA+PL S +P+ WAQT +LKISHQFPGGT TEGDFRDRL R FA +V Sbjct: 1 MFSTTRRTLLGAIAASPLFS-IPAAWAQTTALKISHQFPGGTATEGDFRDRLCRQFATEV 59 Query: 61 SERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVT 120 +R+KG+LKFE+YPGSSLMKTNAQFS+MRKGALDMSLVPL+YAGGE+PE NIGLMPGLVT Sbjct: 60 EKRSKGSLKFEVYPGSSLMKTNAQFSSMRKGALDMSLVPLSYAGGEMPEVNIGLMPGLVT 119 Query: 121 SYQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGS 180 SY+QG WKNAEVG+EL R+L EKG+++VSWIWQAGGVASR PIV+P DAKG+K+RGGS Sbjct: 120 SYEQGYGWKNAEVGRELNRLLLEKGIVVVSWIWQAGGVASRTIPIVEPEDAKGLKIRGGS 179 Query: 181 REMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKA 240 REMDLILK AGAAVV+LPSNEIYAAMQTGAMDAA+TSSTS +SFRLEEV+K+LTTGR KA Sbjct: 180 REMDLILKAAGAAVVSLPSNEIYAAMQTGAMDAALTSSTSLISFRLEEVSKSLTTGRGKA 239 Query: 241 YWYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVV 300 YW+MFEPLM+SK VF++L KDQQ++IMAVG E+E A K+AQ DD VA VYQK GAKVV Sbjct: 240 YWFMFEPLMMSKVVFDKLSKDQQAIIMAVGGELETMARKSAQTDDSLVAAVYQKTGAKVV 299 Query: 301 DLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 340 DL+ VKKWQ IAR TAWKD+A RNANCA LL LAEKTL Sbjct: 300 DLSEATVKKWQTIARATAWKDYAERNANCANLLKLAEKTL 339 >ref|YP_523097.1| TRAP dicarboxylate transporter subunit DctP [Rhodoferax ferrireducens T118] gb|ABD69566.1| TRAP dicarboxylate transporter- DctP subunit [Rhodoferax ferrireducens T118] Length = 338 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 251/338 (74%), Positives = 297/338 (87%), Gaps = 5/338 (1%) Query: 6 RRQFL---GTLAAAPLASAVPSVWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQVSE 62 RRQ L G LAA+ + ++ +AQT++LKISHQFPGGT+ EGDFRDRLVR FA +V + Sbjct: 3 RRQLLQSMGGLAASTMPFSL--AFAQTSALKISHQFPGGTIKEGDFRDRLVRNFAAEVEK 60 Query: 63 RTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSY 122 R+KGA+KFEIYPGSSLMKTNAQFS+MRKGALDM+L+PL+YAGGEVPE NIGLMPGLV SY Sbjct: 61 RSKGAMKFEIYPGSSLMKTNAQFSSMRKGALDMALIPLSYAGGEVPELNIGLMPGLVVSY 120 Query: 123 QQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSRE 182 +Q +WK VG EL RVL EKG++++SWIWQAGGVASRGKP+V+P DAKGMK+RGGSRE Sbjct: 121 EQAYSWKTKPVGIELTRVLQEKGIVLISWIWQAGGVASRGKPVVEPEDAKGMKIRGGSRE 180 Query: 183 MDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYW 242 MD+ILK+AGAAVV+LPSNEIYAAMQTGAMDAAMTSSTSF+SFRLEEVAKALTTGR AYW Sbjct: 181 MDMILKDAGAAVVSLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRTGAYW 240 Query: 243 YMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVDL 302 +MFEPLM+SKA+F++LPKDQ+ ++M VGAEME+FA +AA+ DDI VA VYQKAGAKVVDL Sbjct: 241 FMFEPLMMSKAIFDKLPKDQRDMLMTVGAEMEKFALEAAKKDDIDVAAVYQKAGAKVVDL 300 Query: 303 NAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 340 + +KKWQDIAR TAWKD+ A+N CAKLLALA++TL Sbjct: 301 SDGTIKKWQDIARKTAWKDYGAKNEGCAKLLALAQQTL 338 >ref|YP_287220.1| TRAP dicarboxylate transporter- DctP subunit [Dechloromonas aromatica RCB] gb|AAZ48750.1| TRAP dicarboxylate transporter- DctP subunit [Dechloromonas aromatica RCB] Length = 341 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 242/337 (71%), Positives = 286/337 (84%), Gaps = 2/337 (0%) Query: 6 RRQFLGTLAAAPLASAVPSV-WAQTA-SLKISHQFPGGTLTEGDFRDRLVRMFAQQVSER 63 RR L + A P + P++ WAQ A LKISHQFPGGT TEGDFRDRL R F+ ++++R Sbjct: 5 RRNILKGMVATPALALSPNLLWAQAAGELKISHQFPGGTATEGDFRDRLCRRFSAEITKR 64 Query: 64 TKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQ 123 T GAL+ +YPGSSLMKTNAQFS++RKGALDM+LVPL+YAGGEVPETNIGLMPG+VTSY+ Sbjct: 65 TNGALRGTVYPGSSLMKTNAQFSSVRKGALDMTLVPLSYAGGEVPETNIGLMPGIVTSYE 124 Query: 124 QGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSREM 183 Q +WK AE+GK LA +LA+KGV++VSWIWQAGGVASR KPI+DP DAKG+KVRGGSREM Sbjct: 125 QAVSWKKAEIGKALANILADKGVLVVSWIWQAGGVASRVKPIIDPEDAKGLKVRGGSREM 184 Query: 184 DLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYWY 243 D++LK+AGA V+TLPSNEIYAAMQTGA+DAAMTSSTS +SFRLEEV KALTTGR K YW+ Sbjct: 185 DMVLKQAGATVLTLPSNEIYAAMQTGALDAAMTSSTSLISFRLEEVGKALTTGRGKTYWF 244 Query: 244 MFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVDLN 303 MFEPL+IS+AVFE+LPK QQ IMAVGAEME +A + A+ADD AVA VYQKAG K DL+ Sbjct: 245 MFEPLLISRAVFEKLPKAQQDAIMAVGAEMEAYALEGARADDQAVAAVYQKAGGKAYDLS 304 Query: 304 AEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 340 VKKWQ IAR+TAWKDFAA+N +CA++L LAE TL Sbjct: 305 DASVKKWQAIARDTAWKDFAAKNESCARILKLAEATL 341 >ref|YP_001240024.1| putative TRAP-type C4-dicarboxylate transport system [Bradyrhizobium sp. BTAi1] gb|ABQ36118.1| putative TRAP-type C4-dicarboxylate transport system [Bradyrhizobium sp. BTAi1] Length = 340 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/334 (65%), Positives = 273/334 (81%), Gaps = 1/334 (0%) Query: 4 FTRRQFLGTLAAAPLASAVPSVWAQTAS-LKISHQFPGGTLTEGDFRDRLVRMFAQQVSE 62 +RR L + AAP + A+ A+ LKISHQFPGGT+ +GDFRDRL RMFA++VS+ Sbjct: 2 LSRRTVLASALAAPAILRFGTGTARAATTLKISHQFPGGTIDKGDFRDRLCRMFAEEVSK 61 Query: 63 RTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSY 122 R+ G + EIYP SSL+KT AQFSAMRKGALD+SL P+ YAGGEVPETNIGLMPGLVT+Y Sbjct: 62 RSGGEIAAEIYPNSSLIKTVAQFSAMRKGALDISLYPMPYAGGEVPETNIGLMPGLVTTY 121 Query: 123 QQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSRE 182 QG WKN VGK L+ LA+KG+I+++W+WQAGGVASR +P+V P DAKGMKVRGGSRE Sbjct: 122 DQGLRWKNEPVGKALSDFLADKGIILLTWVWQAGGVASRSRPLVTPDDAKGMKVRGGSRE 181 Query: 183 MDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYW 242 MD++L+ AGA+V+++PSNEIY AMQTGA DA +TSSTS +SFRLEEVAKALT+G +YW Sbjct: 182 MDMVLQTAGASVLSVPSNEIYTAMQTGACDAGLTSSTSLISFRLEEVAKALTSGAKASYW 241 Query: 243 YMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVDL 302 +M EPLM+SKA F++LPK+QQ V++AVGAE+E F K AQ DDI VA+VY+KAGAKV +L Sbjct: 242 FMLEPLMMSKATFDKLPKNQQDVLLAVGAELEAFGRKGAQDDDIEVAKVYEKAGAKVAEL 301 Query: 303 NAEVVKKWQDIARNTAWKDFAARNANCAKLLALA 336 + E V KW+DIAR+TAWKD+ ++ANCAKLL LA Sbjct: 302 DLETVNKWRDIARDTAWKDYGGKSANCAKLLKLA 335 >ref|YP_001205684.1| putative TRAP-type C4-dicarboxylate transport system binding periplasmic protein DctP [Bradyrhizobium sp. ORS 278] emb|CAL77458.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like); putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 340 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 217/334 (64%), Positives = 273/334 (81%), Gaps = 1/334 (0%) Query: 4 FTRRQFLGTLAAAPLASAVPSVWAQTAS-LKISHQFPGGTLTEGDFRDRLVRMFAQQVSE 62 +RR + + AAP + A A+ LKISHQFPGGT+ +GDFRDRL R+FA++VS+ Sbjct: 2 LSRRHVIASALAAPAILRFGTGTAHAATTLKISHQFPGGTIDKGDFRDRLCRVFAEEVSK 61 Query: 63 RTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSY 122 R+ G + EIYP SSL+KT AQFSAMRKGALD+SL P+ YAGGE+PETNIGLMPGLVT+Y Sbjct: 62 RSGGEIAAEIYPNSSLIKTVAQFSAMRKGALDISLYPMPYAGGELPETNIGLMPGLVTTY 121 Query: 123 QQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSRE 182 QG WKN VGK L+ LA+KG+I+++W+WQAGGVASR +P++ P DAKGMKVRGGSRE Sbjct: 122 DQGMRWKNEPVGKALSDFLADKGIILLTWVWQAGGVASRSRPLLTPDDAKGMKVRGGSRE 181 Query: 183 MDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYW 242 MD++L+ AGA+V+++PSNEIY AMQTGA DA +TSSTS +SFRLEEVAKALT+G +YW Sbjct: 182 MDMVLQTAGASVLSVPSNEIYTAMQTGACDAGLTSSTSLISFRLEEVAKALTSGAKASYW 241 Query: 243 YMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVDL 302 +M EPLM+SKA F++LPK+QQ ++M VGAEME F K AQ DDI VA+VY+KAGAKVV+L Sbjct: 242 FMLEPLMMSKASFDKLPKNQQDILMTVGAEMEAFGRKGAQEDDIEVAKVYEKAGAKVVEL 301 Query: 303 NAEVVKKWQDIARNTAWKDFAARNANCAKLLALA 336 + E+V KW+DIAR+TAWKD+ ++ANCAKLL LA Sbjct: 302 DVEIVNKWRDIARDTAWKDYGGKSANCAKLLKLA 335 >ref|NP_771070.1| hypothetical protein bll4430 [Bradyrhizobium japonicum USDA 110] dbj|BAC49695.1| bll4430 [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 219/334 (65%), Positives = 270/334 (80%), Gaps = 1/334 (0%) Query: 4 FTRRQFLGTLAAAPLASAVPSVWAQTAS-LKISHQFPGGTLTEGDFRDRLVRMFAQQVSE 62 TRR L T AAP + A A+ LKISHQFPGGT+ +GDFRDRL RMFA +V++ Sbjct: 2 LTRRHLLATAVAAPAILRFGTGTAHAATTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAK 61 Query: 63 RTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSY 122 R+ G + EIYP SSL+KTNAQFSAMRKGALD+SL P+ YAGGE+PETNIGLMPGLVT+Y Sbjct: 62 RSNGDIAAEIYPNSSLIKTNAQFSAMRKGALDISLYPMPYAGGELPETNIGLMPGLVTTY 121 Query: 123 QQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSRE 182 QG WK VGK L+ LA+KG+I+++W+WQAGG+ASR KPIV P DAKGMKVRGGSRE Sbjct: 122 DQGMRWKKEPVGKALSDFLADKGIILLTWVWQAGGLASRSKPIVAPEDAKGMKVRGGSRE 181 Query: 183 MDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAYW 242 MD++L+ AGA+V+++PSNEIYAAMQTGA DAA+TSSTS +SFRLEEVAK+LT+G +YW Sbjct: 182 MDMVLQTAGASVLSVPSNEIYAAMQTGACDAALTSSTSLISFRLEEVAKSLTSGAGASYW 241 Query: 243 YMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVDL 302 +M EPLM+SKA+F++LPK+QQ V++AVGAE+E F K AQ DD+ VA+VY+KAGAKV L Sbjct: 242 FMLEPLMMSKAIFDKLPKNQQDVLLAVGAELEVFGRKGAQDDDVEVAKVYEKAGAKVSVL 301 Query: 303 NAEVVKKWQDIARNTAWKDFAARNANCAKLLALA 336 +A V KW+DIAR+TAWKD+ A+ A A LL LA Sbjct: 302 DAATVGKWRDIARDTAWKDYGAKTATAANLLKLA 335 >ref|NP_947885.1| TRAP dicarboxylate family transporter subunit DctP [Rhodopseudomonas palustris CGA009] emb|CAE27984.1| TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein [Rhodopseudomonas palustris CGA009] Length = 339 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/335 (64%), Positives = 272/335 (81%), Gaps = 3/335 (0%) Query: 4 FTRRQFLGTLAAAP--LASAVPSVWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQVS 61 +RR L + AAP L + S A T +LKISHQFPGGT+ +GDFRDRL R FA ++S Sbjct: 2 LSRRHLLISALAAPAVLKYGIGSAQAAT-TLKISHQFPGGTIDKGDFRDRLCRKFADEIS 60 Query: 62 ERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTS 121 +R+ G L E+YPGSSL+KTNAQFSAMRKGALD+SL P+ YAGGEVPETNIGLMPGLV++ Sbjct: 61 KRSGGELVGEVYPGSSLIKTNAQFSAMRKGALDLSLYPMPYAGGEVPETNIGLMPGLVST 120 Query: 122 YQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSR 181 Y+QG +WK VGK L LA+KG+++V+W+WQAGGVASR K ++ P DAKG+KVRGGSR Sbjct: 121 YEQGLSWKTKPVGKALTDFLADKGIVLVTWVWQAGGVASRSKALLSPDDAKGLKVRGGSR 180 Query: 182 EMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAY 241 EMD++L++AGAAV+++PSNEIYAAMQTGA DA +TSSTS +SFRLEEVAK LT+G D +Y Sbjct: 181 EMDMVLQQAGAAVLSVPSNEIYAAMQTGACDAGITSSTSLISFRLEEVAKHLTSGADASY 240 Query: 242 WYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVD 301 W+M EPLM+SKA+F++LPK+ Q +I++VGAE+E F + AQADDI VA+VY+KAGAKV Sbjct: 241 WFMLEPLMMSKAIFDKLPKNHQDIILSVGAELEAFGKQGAQADDIEVAKVYEKAGAKVDK 300 Query: 302 LNAEVVKKWQDIARNTAWKDFAARNANCAKLLALA 336 L+A V+KW IAR+TAWKD++ + A CA LL LA Sbjct: 301 LDAATVEKWAVIARDTAWKDYSKKTATCANLLKLA 335 >ref|YP_001991797.1| TRAP dicarboxylate transporter subunit DctP [Rhodopseudomonas palustris TIE-1] gb|ACF01322.1| TRAP dicarboxylate transporter- DctP subunit [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/335 (64%), Positives = 271/335 (80%), Gaps = 3/335 (0%) Query: 4 FTRRQFLGTLAAAP--LASAVPSVWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQVS 61 +RR L + AAP L + S A T +LKISHQFPGGT+ +GDFRDRL R FA ++S Sbjct: 2 LSRRHLLVSALAAPAVLKYGIGSAQAAT-TLKISHQFPGGTIDKGDFRDRLCRKFADEIS 60 Query: 62 ERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTS 121 +R+ G L E+YPGSSL+KTNAQFSAMRKGALD+SL P+ YAGGEVPETNIGLMPGLV++ Sbjct: 61 KRSGGELVGEVYPGSSLIKTNAQFSAMRKGALDLSLYPMPYAGGEVPETNIGLMPGLVST 120 Query: 122 YQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKGMKVRGGSR 181 Y+QG +WK VGK L LA+KG+++V+W+WQAGGVASR K ++ P DAKG+KVRGGSR Sbjct: 121 YEQGLSWKTKPVGKALTDFLADKGIVLVTWVWQAGGVASRSKALLSPDDAKGLKVRGGSR 180 Query: 182 EMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKALTTGRDKAY 241 EMD++L++AGAAV+++PSNEIYAAMQTGA DA +TSSTS +SFRLEEVAK LT+G D +Y Sbjct: 181 EMDMVLQQAGAAVLSVPSNEIYAAMQTGACDAGITSSTSLISFRLEEVAKHLTSGADASY 240 Query: 242 WYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQKAGAKVVD 301 W+M EPLM+SKA+F++LPK+ Q +I++VGAE+E F + AQADDI VA+VY+KAGAKV Sbjct: 241 WFMLEPLMMSKAIFDKLPKNHQDIILSVGAELETFGKQGAQADDIEVAKVYEKAGAKVDK 300 Query: 302 LNAEVVKKWQDIARNTAWKDFAARNANCAKLLALA 336 L+A V+KW IAR+TAWKD+ + A CA LL LA Sbjct: 301 LDAATVEKWAVIARDTAWKDYGKKTATCANLLKLA 335