BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0016.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776100.1| RNA polymerase sigma-E factor [Herbaspirillu... 321 3e-86 ref|YP_001355194.1| ECF subfamily RNA polymerase sigma factor [J... 190 8e-47 ref|YP_001101504.1| putative RNA polymerase sigma factor [Hermin... 190 8e-47 ref|YP_283748.1| sigma-70 region 2:sigma-70 region 4 [Dechloromo... 176 1e-42 ref|YP_934068.1| putative RNA polymerase sigma factor [Azoarcus ... 166 2e-39 gb|EFV87230.1| RNA polymerase sigma factor [Achromobacter xyloso... 155 3e-36 gb|EGP47545.1| RNA polymerase sigma factor [Achromobacter xyloso... 154 5e-36 ref|ZP_03270583.1| RNA polymerase, sigma-24 subunit, ECF subfami... 151 3e-35 ref|YP_003167951.1| ECF subfamily RNA polymerase sigma-24 subuni... 151 4e-35 ref|YP_553645.1| sigma-24 factor FecI [Burkholderia xenovorans L... 150 1e-34 >ref|YP_003776100.1| RNA polymerase sigma-E factor [Herbaspirillum seropedicae SmR1] gb|ADJ64192.1| RNA polymerase sigma-E factor (sigma-24) protein [Herbaspirillum seropedicae SmR1] Length = 163 Score = 321 bits (822), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 160/163 (98%), Positives = 161/163 (98%) Query: 22 MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD 81 MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD Sbjct: 1 MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD 60 Query: 82 ARRRASPATVALDEFGEIDQVQAALDPGVLLDLETALQLLPPEQREVLLLVVLEEMRYEE 141 ARRRASPATVALDE+GEIDQ Q ALDPGVLLDLETALQLLPPEQREVLLLVVLEEMRYEE Sbjct: 61 ARRRASPATVALDEYGEIDQAQVALDPGVLLDLETALQLLPPEQREVLLLVVLEEMRYEE 120 Query: 142 VAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 VAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK Sbjct: 121 VAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 163 >ref|YP_001355194.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] gb|ABR88751.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium sp. Marseille] Length = 168 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 102/170 (60%), Positives = 121/170 (71%), Gaps = 4/170 (2%) Query: 16 QADEQAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIM 75 Q + ++AC+PRLRRYARAL G R ADDLVQDT+ER W+KL SWQRGS MR WLF IM Sbjct: 2 QDERDRLIACIPRLRRYARALLGDRTGADDLVQDTMERGWKKLSSWQRGSDMRAWLFGIM 61 Query: 76 HNLHADARRRASPATVALDEFGEIDQVQAALDPGV-LLDLETALQLLPPEQREVLLLVVL 134 HNLH D R+ S T LD+ I ++ G+ + DLE+AL LP EQRE+LLLV L Sbjct: 62 HNLHVDQVRKPSLPTEELDDDTPIPAAHTSVSDGLEMRDLESALHSLPTEQREILLLVAL 121 Query: 135 EEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 EEM YEEVA TLG+P GTVMSRLSRAR++LR M+G+ S LKVVK Sbjct: 122 EEMSYEEVAATLGLPLGTVMSRLSRARQKLRTQMEGRAVV---SLLKVVK 168 >ref|YP_001101504.1| putative RNA polymerase sigma factor [Herminiimonas arsenicoxydans] emb|CAL63383.1| Putative RNA polymerase sigma factor [Herminiimonas arsenicoxydans] Length = 168 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 102/170 (60%), Positives = 121/170 (71%), Gaps = 4/170 (2%) Query: 16 QADEQAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIM 75 Q + ++AC+PRLRRYARAL G R ADDLVQDT+ER W+KL SWQRGS MR WLF IM Sbjct: 2 QDERDRLIACIPRLRRYARALIGERTGADDLVQDTMERGWKKLSSWQRGSDMRAWLFGIM 61 Query: 76 HNLHADARRRASPATVALDEFGEIDQVQAALDPGV-LLDLETALQLLPPEQREVLLLVVL 134 HNLH D RR T LD+ + +A G+ + DL++AL LPPEQRE+LLLV L Sbjct: 62 HNLHIDQVRRPGIMTEVLDDDTPLPTSKATQADGLEMRDLQSALATLPPEQREILLLVAL 121 Query: 135 EEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 EEM YEEVA TLG+P GTVMSRLSRAR++LR M+G+ P LKVVK Sbjct: 122 EEMSYEEVATTLGLPLGTVMSRLSRARQKLRAHMEGRTVVLP---LKVVK 168 >ref|YP_283748.1| sigma-70 region 2:sigma-70 region 4 [Dechloromonas aromatica RCB] gb|AAZ45278.1| Sigma-70 region 2:Sigma-70 region 4 [Dechloromonas aromatica RCB] Length = 166 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 98/172 (56%), Positives = 122/172 (70%), Gaps = 12/172 (6%) Query: 18 DEQAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHN 77 D +A+LA LPRLRRYARA+ G R AADDLVQDTLERAW ++ W++GS +R WLF IMHN Sbjct: 2 DSRAILAELPRLRRYARAMLGDRAAADDLVQDTLERAWSRISQWRQGSDLRAWLFGIMHN 61 Query: 78 LHADARRRASPATVALDEFGEIDQVQAALDPG-----VLLDLETALQLLPPEQREVLLLV 132 L D RRA A +LDE D + L P L+DLE+AL+ LP EQRE+LLLV Sbjct: 62 LRIDQLRRAGLAITSLDE----DAAEVPLRPTQTDRLELMDLESALRQLPDEQREILLLV 117 Query: 133 VLEEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 LEEM Y ++A LGIP GTVMSRLSR RERLR VM G+ ++ ++L++V+ Sbjct: 118 ALEEMSYADIATLLGIPIGTVMSRLSRGRERLRVVMDGRQQT---ANLRLVR 166 >ref|YP_934068.1| putative RNA polymerase sigma factor [Azoarcus sp. BH72] emb|CAL95181.1| putative RNA polymerase sigma factor [Azoarcus sp. BH72] Length = 166 Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/168 (57%), Positives = 113/168 (67%), Gaps = 4/168 (2%) Query: 18 DEQAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHN 77 D A+LA LPRLRRYARAL G R AADDLVQDTLERAW + W+ +P+RPWLF IMHN Sbjct: 2 DGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMHN 61 Query: 78 LHADARRRASPATVAL-DEFGEIDQVQAALDPGVLLDLETALQLLPPEQREVLLLVVLEE 136 L D RR T L DE E+ D + DL+ AL LP EQR VLLLV LE Sbjct: 62 LRIDQLRRPGLHTRPLEDEDFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALEG 121 Query: 137 MRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 MRYE++A TLG+P GTVMSRLSR RERLR +M GE+ + L+VV+ Sbjct: 122 MRYEDIAATLGVPLGTVMSRLSRGRERLRAIM---GEAPAANRLRVVR 166 >gb|EFV87230.1| RNA polymerase sigma factor [Achromobacter xylosoxidans C54] Length = 170 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/173 (53%), Positives = 107/173 (61%), Gaps = 7/173 (4%) Query: 15 RQADEQAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSI 74 R DE A+LAC+P LRRYAR LTG ADDLVQDTLERAW + WQR +R W+F I Sbjct: 2 RADDEAAILACIPSLRRYARGLTGDPHRADDLVQDTLERAWSRYSRWQRRGELRAWMFGI 61 Query: 75 MHNLHADARRRASPATVALDEFGEIDQV---QAALDPGVLLDLETALQLLPPEQREVLLL 131 MHN D RAS G++ V D + DL+ LQ LP EQREVLLL Sbjct: 62 MHNHFIDG-VRASHRQAEQAGAGDLPDVPVRATQTDHLEVRDLDRCLQGLPAEQREVLLL 120 Query: 132 VVLEEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 V +E++ Y+E A LG+P GTVMSRLSRARERL +MQGQ P S L VK Sbjct: 121 VCVEDLSYQETAQVLGVPIGTVMSRLSRARERLGALMQGQ---EPASRLHRVK 170 >gb|EGP47545.1| RNA polymerase sigma factor [Achromobacter xylosoxidans AXX-A] Length = 170 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 90/174 (51%), Positives = 107/174 (61%), Gaps = 9/174 (5%) Query: 15 RQADEQAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSI 74 R DE A+LAC+P LRRYAR LTG ADDLVQDTLERAW + WQR +R W+F I Sbjct: 2 RADDEAAILACIPSLRRYARGLTGDPHRADDLVQDTLERAWSRYSRWQRRGELRAWMFGI 61 Query: 75 MHNLHADA----RRRASPATVALDEFGEIDQVQAALDPGVLLDLETALQLLPPEQREVLL 130 MHN D R+A A + ++ D + DL+ LQ LP EQREVLL Sbjct: 62 MHNHFIDGVRANHRQAEQAGAG--DLPDVPVRATQTDHLEVRDLDRCLQGLPAEQREVLL 119 Query: 131 LVVLEEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 LV +E++ Y+E A LG+P GTVMSRLSRARERL +MQGQ P S L VK Sbjct: 120 LVCVEDLSYQETAQVLGVPIGTVMSRLSRARERLGALMQGQ---EPASRLHRVK 170 >ref|ZP_03270583.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] gb|EDZ97840.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. H160] Length = 172 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/171 (53%), Positives = 115/171 (67%), Gaps = 13/171 (7%) Query: 22 MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD 81 ++ +PRLRRYARAL RE ADDLVQDTLERA +Q G+ +R WLF+IMHNL A+ Sbjct: 7 LMEHVPRLRRYARALINNRELADDLVQDTLERALGHTGLFQPGTDLRAWLFTIMHNLFAN 66 Query: 82 ARRRAS--PATVALDEFGEIDQVQAALDPGV------LLDLETALQLLPPEQREVLLLVV 133 R+AS VA+D+ I + + A+ P V + DL+ ALQ LP EQREV+LLV Sbjct: 67 QARKASARAVHVAVDD-DSIAESELAV-PSVQTRSLEMRDLDYALQRLPVEQREVVLLVG 124 Query: 134 LEEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 LEEM Y +VA+ L IP GTVMSRLSR RERLR +M G PG+ L+VV+ Sbjct: 125 LEEMSYADVALALNIPIGTVMSRLSRGRERLRALMAG---GQPGAKLQVVR 172 >ref|YP_003167951.1| ECF subfamily RNA polymerase sigma-24 subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV36022.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 167 Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/167 (55%), Positives = 110/167 (65%), Gaps = 7/167 (4%) Query: 20 QAMLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLH 79 A++A +PRLRRYARALTG ++ADDLVQDTLERA K W R +RPWLFSIMHNLH Sbjct: 5 DAIVAEIPRLRRYARALTGHGDSADDLVQDTLERALDKWRFWHRERDLRPWLFSIMHNLH 64 Query: 80 ADARRRASPATVALDEFGEIDQVQAA--LDPGVLLDLETALQLLPPEQREVLLLVVLEEM 137 D RRR D + VQ A D L DL+ AL LP EQREVLLLV LE++ Sbjct: 65 VDGRRRDGRVAFCADSDLPV-PVQRADQADALELRDLQHALMQLPLEQREVLLLVGLEDL 123 Query: 138 RYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 Y +VA+ LG+P GTVMSRLSRAR RLR V+ + + L+VVK Sbjct: 124 SYADVALALGVPPGTVMSRLSRARGRLRAVLADEFT----APLRVVK 166 >ref|YP_553645.1| sigma-24 factor FecI [Burkholderia xenovorans LB400] ref|ZP_06842670.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. Ch1-1] gb|ABE34295.1| Sigma-24 (FecI) [Burkholderia xenovorans LB400] gb|EFG69629.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia sp. Ch1-1] Length = 172 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/172 (51%), Positives = 115/172 (66%), Gaps = 15/172 (8%) Query: 22 MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD 81 ++ +PRLRRYARAL R+ ADDLVQDTLERA + +Q G+ +R WLF+IMHN+ A+ Sbjct: 7 LMEHVPRLRRYARALINNRDLADDLVQDTLERALGRTGMFQPGTDLRAWLFTIMHNVFAN 66 Query: 82 ARRRASP--ATVALD-------EFGEIDQVQAALDPGVLLDLETALQLLPPEQREVLLLV 132 R+AS VA+D EF + +L+ + DL+ ALQ LP EQREV+LLV Sbjct: 67 QARKASARAVHVAVDDESVSESEFAVPSEQTRSLE---MRDLDYALQRLPMEQREVVLLV 123 Query: 133 VLEEMRYEEVAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 184 LEEM Y +VA+ L IP GTVMSRLSR RERLR +M G + PG+ L+VV+ Sbjct: 124 GLEEMSYADVALALNIPIGTVMSRLSRGRERLRALMAG---AQPGAKLQVVR 172