BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0008.p (406 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776108.1| multidrug resistance A (translocase) transme... 810 0.0 ref|YP_003604789.1| efflux pump membrane protein [Burkholderia s... 481 e-134 ref|ZP_03268971.1| efflux pump membrane protein [Burkholderia sp... 474 e-131 ref|YP_001857953.1| efflux pump membrane protein [Burkholderia p... 462 e-128 ref|YP_004029116.1| multidrug resistance protein A [Burkholderia... 462 e-128 emb|CAQ35407.1| multidrug resistance protein a (translocase) [Ra... 461 e-127 ref|ZP_00946654.1| Probable multidrug resistance protein A (emrA... 461 e-127 ref|YP_558199.1| major facilitator superfamily efflux pump membr... 459 e-127 ref|YP_726761.1| multidrug efflux membrane fusion protein [Ralst... 459 e-127 ref|YP_002911811.1| efflux pump membrane protein [Burkholderia g... 459 e-127 >ref|YP_003776108.1| multidrug resistance A (translocase) transmembrane secretion protein [Herbaspirillum seropedicae SmR1] gb|ADJ64200.1| multidrug resistance A (translocase) transmembrane secretion protein [Herbaspirillum seropedicae SmR1] Length = 406 Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/406 (99%), Positives = 406/406 (100%) Query: 1 MSDSTTQQQPQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGN 60 MSDSTTQQQPQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGN Sbjct: 1 MSDSTTQQQPQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGN 60 Query: 61 VVQISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFL 120 VVQISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFL Sbjct: 61 VVQISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFL 120 Query: 121 NNDTLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAA 180 NNDTLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDV+HARDAVKSAVAALDQARAA Sbjct: 121 NNDTLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAA 180 Query: 181 AAANRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAG 240 AAANRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAG Sbjct: 181 AAANRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAG 240 Query: 241 NPLMAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAF 300 NPLMAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAF Sbjct: 241 NPLMAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAF 300 Query: 301 SLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDGRALEAVPTN 360 SLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDGRALEAVPTN Sbjct: 301 SLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDGRALEAVPTN 360 Query: 361 YQTNVYDDLGKQADAIVERIISDNASGLPQAHKSKAAAAPVAVPHT 406 YQTNVYDDLGKQADAIV+RIISDNASGLPQAHKSKAAAAPVAVPHT Sbjct: 361 YQTNVYDDLGKQADAIVDRIISDNASGLPQAHKSKAAAAPVAVPHT 406 >ref|YP_003604789.1| efflux pump membrane protein [Burkholderia sp. CCGE1002] gb|ADG15278.1| efflux pump membrane protein [Burkholderia sp. CCGE1002] Length = 413 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 247/387 (63%), Positives = 303/387 (78%), Gaps = 7/387 (1%) Query: 4 STTQQQ---PQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGN 60 ST QQ PQA NNG KRKR + LL +V+L+ AVA LY+FL ARF E+TDDAYV GN Sbjct: 2 STPQQPATPPQAANNG--KRKRMMTLLVIVILIAAVAYGLYYFLDARFHEDTDDAYVSGN 59 Query: 61 VVQISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFL 120 VVQI+ QV GTV+AV ADDTQVVKAG LV LD AD R+AL+QA+A LAQ VRQ R LF Sbjct: 60 VVQITPQVTGTVIAVNADDTQVVKAGDPLVVLDPADARVALEQAEANLAQVVRQVRGLFA 119 Query: 121 NNDTLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAA 180 ++ A VAA+ ++L+RA++DL+RR +GAVSQE+++HARDAVKSA AALD A+ Sbjct: 120 DDSQYEARVAASQADLSRAQDDLKRRMTVAQTGAVSQEEISHARDAVKSAQAALDAAKQQ 179 Query: 181 AAANRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAG 240 AANRALT +T++ HPNV AA +R+AYLN+AR + APV+G+V+KRSVQVGQR++ G Sbjct: 180 LAANRALTANTTIANHPNVQAAAAKLRDAYLNHARNTLPAPVTGYVAKRSVQVGQRVSPG 239 Query: 241 NPLMAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAF 300 PLMAIVPL +W+DANFKE QL+H+RIGQPVE+ ADVYGSSV Y G VIGFSAGTG AF Sbjct: 240 TPLMAIVPLHDVWVDANFKEVQLKHMRIGQPVELTADVYGSSVPYHGKVIGFSAGTGSAF 299 Query: 301 SLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD--GRALEAVP 358 SLLPAQNATGNWIKVVQR+PVRI+LDP+++ HPLRIGLS A V+I D G+ +A Sbjct: 300 SLLPAQNATGNWIKVVQRLPVRISLDPQELEKHPLRIGLSMQADVNIKDDTGGQLGQAPS 359 Query: 359 TNYQTNVYDDLGKQADAIVERIISDNA 385 T+YQTNV+D G +ADA + RII++NA Sbjct: 360 TSYQTNVFDKYGAEADAEIARIIAENA 386 >ref|ZP_03268971.1| efflux pump membrane protein [Burkholderia sp. H160] gb|EDZ99443.1| efflux pump membrane protein [Burkholderia sp. H160] Length = 412 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 250/408 (61%), Positives = 309/408 (75%), Gaps = 9/408 (2%) Query: 4 STTQQQ---PQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGN 60 ST QQ PQA NNG KRKR + LL +V+L+ AVA LY+FL ARF E+TDDAYV GN Sbjct: 2 STPQQPATPPQAANNG--KRKRMMTLLVIVILIAAVAYGLYYFLVARFHEDTDDAYVSGN 59 Query: 61 VVQISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFL 120 VVQI+ QV GTV+AV ADDTQVVKAG LV LD AD R+AL QA+A LAQ VRQ R LF Sbjct: 60 VVQITPQVTGTVIAVNADDTQVVKAGDPLVVLDPADARVALQQAEANLAQVVRQVRGLFA 119 Query: 121 NNDTLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAA 180 ++ A VAA+ ++L+RA++DL+RR +GAVSQE+++HARD+VKSA AALD A+ Sbjct: 120 DDSQYEARVAASQADLSRAQDDLKRRMTVAQTGAVSQEEISHARDSVKSAQAALDAAKQQ 179 Query: 181 AAANRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAG 240 AANRALT +T++ +HPNV AA +R+AYLN+AR + APV+G+V+KRSVQVGQR++ G Sbjct: 180 LAANRALTANTTIADHPNVQAAAAKLRDAYLNHARNTLPAPVTGYVAKRSVQVGQRVSPG 239 Query: 241 NPLMAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAF 300 PLMAIVPL +W+DANFKE QL+ +RIGQPVE+ ADVYGSSV + G V+GFSAGTG AF Sbjct: 240 TPLMAIVPLHDVWVDANFKEVQLKRMRIGQPVELTADVYGSSVPFHGKVVGFSAGTGSAF 299 Query: 301 SLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD--GRALEAVP 358 SLLPAQNATGNWIKVVQR+PVRI+LDP+++ HPLRIGLS A V+I D G+ +A Sbjct: 300 SLLPAQNATGNWIKVVQRLPVRISLDPQELEKHPLRIGLSMQADVNIKDDTGGQLGQAPS 359 Query: 359 TNYQTNVYDDLGKQADAIVERIISDNASGLPQ--AHKSKAAAAPVAVP 404 T YQTNV+D G +ADA + RII++NA A KS AA+ A P Sbjct: 360 TAYQTNVFDKYGAEADAEIARIIAENAGSNVNGGAQKSTAASGVAAKP 407 >ref|YP_001857953.1| efflux pump membrane protein [Burkholderia phymatum STM815] gb|ACC70907.1| efflux pump membrane protein [Burkholderia phymatum STM815] Length = 406 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 246/401 (61%), Positives = 299/401 (74%), Gaps = 5/401 (1%) Query: 4 STTQQQPQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGNVVQ 63 ST QQ A NGKRKR + LL +V+L+ A+A LY+FL ARF E+TDDAYV GN+VQ Sbjct: 2 STPQQPANAQPASNGKRKRMMTLLVIVILIAAIAYGLYYFLVARFHEDTDDAYVNGNIVQ 61 Query: 64 ISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNND 123 I+ QV GTV+AV ADDTQ VKAG LV LD AD+R+AL A+A L Q VRQ R L+ ++ Sbjct: 62 ITPQVTGTVIAVNADDTQTVKAGDPLVVLDPADSRIALQSAEANLGQVVRQVRGLYADDS 121 Query: 124 TLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAAAAA 183 A VA ++L+RA++DL+RR +GAVSQE+++HARDAVKSA AALD A+ A+ Sbjct: 122 QYQAQVAVRQADLSRAQDDLKRRMQVAQTGAVSQEEISHARDAVKSAQAALDAAQQQLAS 181 Query: 184 NRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPL 243 NRALT +T++ HPNV AA VR+AYLN AR + APV+G+V+KRSVQVGQR+A GNPL Sbjct: 182 NRALTANTTIASHPNVQAAAARVRDAYLNNARNTLPAPVTGYVAKRSVQVGQRVAPGNPL 241 Query: 244 MAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLL 303 MAIVPL +W+DANFKE QL+H+RIGQPVE+ ADVYGSSVKY+G V+GFSAGTG AFSLL Sbjct: 242 MAIVPLNAVWVDANFKEVQLKHMRIGQPVELTADVYGSSVKYRGKVVGFSAGTGSAFSLL 301 Query: 304 PAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD--GRALEAVPTNY 361 PAQNATGNWIKVVQR+PVRIALDP+++ HPLRIGLS V I D G A T Y Sbjct: 302 PAQNATGNWIKVVQRLPVRIALDPQELEKHPLRIGLSMQVDVSIKDDTGGELGNAANTVY 361 Query: 362 QTNVYDDLGKQADAIVERIISDNA---SGLPQAHKSKAAAA 399 QTNV+D G QADA + RII++NA +G PQ S A A Sbjct: 362 QTNVFDKYGDQADAEIARIIAENAGPNAGQPQKAASGAKTA 402 >ref|YP_004029116.1| multidrug resistance protein A [Burkholderia rhizoxinica HKI 454] emb|CBW74972.1| Multidrug resistance protein A [Burkholderia rhizoxinica HKI 454] Length = 413 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 247/405 (60%), Positives = 310/405 (76%), Gaps = 10/405 (2%) Query: 4 STTQQQ---PQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGN 60 S+ QQQ P AN GNGKR+R + L+T+V+++ A+A Y+ L ARF+EETDDAYV GN Sbjct: 3 SSPQQQSATPDANA-GNGKRRRLMALITIVIVIAAIAYGAYYLLIARFYEETDDAYVNGN 61 Query: 61 VVQISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFL 120 VVQI+ QV GTV AVKADDTQVV+ GQ LV LD AD+R+AL QA+A LAQ VRQ R L++ Sbjct: 62 VVQITPQVTGTVTAVKADDTQVVQKGQPLVLLDPADSRVALQQAEADLAQTVRQVRTLYV 121 Query: 121 NNDTLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAA 180 NN+ A VA S+L+RA+ DL+RR +GAVSQE+++HARDAVK+A AALD A+ Sbjct: 122 NNNQYQAAVAQRQSDLSRAQNDLRRRLTIAQTGAVSQEEISHARDAVKAAQAALDIAQQQ 181 Query: 181 AAANRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAG 240 A+NRALT + ++ +HPNVL AA V++AYLNYAR + APV+G+V+KRSVQVGQR++ G Sbjct: 182 LASNRALTANVAIAQHPNVLAAAAKVKDAYLNYARNTLPAPVTGYVAKRSVQVGQRVSPG 241 Query: 241 NPLMAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAF 300 PLMAIVPL ++W+DANFKE QL+H+RIGQPV+V++DVYGSSV Y G + GFSAGTG AF Sbjct: 242 TPLMAIVPLNEVWVDANFKEVQLKHMRIGQPVKVVSDVYGSSVVYHGKIQGFSAGTGSAF 301 Query: 301 SLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD-GRALEAVPT 359 SLLPAQNATGNWIKVVQR+PVR+ LDPE+++ HPLRIGLS TA V I + G L PT Sbjct: 302 SLLPAQNATGNWIKVVQRLPVRVQLDPEELKQHPLRIGLSMTANVSIKDEQGGELGNAPT 361 Query: 360 N-YQTNVYDDLGKQADAIVERIISDN----ASGLPQAHKSKAAAA 399 YQT+V+D+ GKQADA +ERII N + P A +K A A Sbjct: 362 TVYQTDVFDEYGKQADAQIERIIRQNDGSGGTAAPAADTAKPAPA 406 >emb|CAQ35407.1| multidrug resistance protein a (translocase) [Ralstonia solanacearum MolK2] Length = 428 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 222/375 (59%), Positives = 290/375 (77%), Gaps = 3/375 (0%) Query: 13 NNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGTV 72 N NGNGKRKR L L L+V + LYW L+ R+FE TDDAYV GNVVQ++ QV GTV Sbjct: 24 NGNGNGKRKRMLTTLASALVVAGIGYGLYWGLYGRWFESTDDAYVQGNVVQVTPQVAGTV 83 Query: 73 VAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNNDTLAANVAAA 132 VA++ADDTQ+V +GQ L+ LD AD R+AL+Q++AALAQAVRQ R L+ N A+ +A Sbjct: 84 VAIRADDTQLVTSGQPLIELDRADARVALEQSEAALAQAVRQVRTLYSNTGAYASTLAMR 143 Query: 133 DSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAAAAANRALTDHTS 192 +S+LA+AREDL RR+ +GAVSQE++AHA+ ++++A AA++ A+ ANR LTD T+ Sbjct: 144 ESDLAKAREDLTRRKQIAGTGAVSQEEIAHAQISLQAAEAAVETAKEQLQANRVLTDQTT 203 Query: 193 VTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQI 252 + HPNVLQAA VR AYL YAR ++ A V+G+V+KRSVQVGQR+A G PLMAIVPL+Q+ Sbjct: 204 LERHPNVLQAAAKVREAYLAYARTSLPASVTGYVAKRSVQVGQRVAPGTPLMAIVPLDQL 263 Query: 253 WIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNW 312 W+DANFKE Q++H+R+GQPVE++ADVYG SV Y G V+GFSAGTG AFSLLPAQNATGNW Sbjct: 264 WVDANFKEVQVRHMRVGQPVELVADVYGGSVTYHGKVVGFSAGTGSAFSLLPAQNATGNW 323 Query: 313 IKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDG---RALEAVPTNYQTNVYDDL 369 IKVVQR+PVR++LDP++++ HPLR+GLS A VDIH +G A + + QT+VYD Sbjct: 324 IKVVQRLPVRVSLDPKELKDHPLRVGLSMEAKVDIHDEGGQSLASTSATSPLQTSVYDQA 383 Query: 370 GKQADAIVERIISDN 384 G++AD ++ II+ N Sbjct: 384 GQEADQVIASIIATN 398 >ref|ZP_00946654.1| Probable multidrug resistance protein A (emrA) MLYD family [Ralstonia solanacearum UW551] ref|YP_002259750.1| multidrug resistance protein a (translocase) [Ralstonia solanacearum IPO1609] gb|EAP70872.1| Probable multidrug resistance protein A (emrA) MLYD family [Ralstonia solanacearum UW551] emb|CAQ61682.1| multidrug resistance protein a (translocase) [Ralstonia solanacearum IPO1609] Length = 428 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/376 (59%), Positives = 290/376 (77%), Gaps = 3/376 (0%) Query: 13 NNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGTV 72 N NGNGKRKR L L L+V + LYW L+ R+FE TDDAYV GNVVQ++ QV GTV Sbjct: 24 NGNGNGKRKRMLTTLASALVVAGIGYGLYWGLYGRWFESTDDAYVQGNVVQVTPQVAGTV 83 Query: 73 VAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNNDTLAANVAAA 132 VA++ADDTQ+V +GQ L+ LD AD R+AL+Q++AALAQAVRQ R L+ N A+ +A Sbjct: 84 VAIRADDTQLVTSGQPLIELDRADARVALEQSEAALAQAVRQVRTLYSNTGAYASTLAMR 143 Query: 133 DSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAAAAANRALTDHTS 192 +S+LA+AREDL RR+ +GAVSQE++AHA+ ++++A AA++ A+ ANR LTD T+ Sbjct: 144 ESDLAKAREDLTRRKQIAGTGAVSQEEIAHAQISLQAAEAAVETAKEQLQANRVLTDQTT 203 Query: 193 VTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQI 252 + HPNVLQAA VR AYL YAR ++ A V+G+V+KRSVQVGQR+A G PLMAIVPL+Q+ Sbjct: 204 LERHPNVLQAAAKVREAYLAYARTSLPASVTGYVAKRSVQVGQRVAPGTPLMAIVPLDQL 263 Query: 253 WIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNW 312 W+DANFKE Q++H+R+GQPVE++ADVYG SV Y G V+GFSAGTG AFSLLPAQNATGNW Sbjct: 264 WVDANFKEVQVRHMRVGQPVELVADVYGGSVTYHGKVVGFSAGTGSAFSLLPAQNATGNW 323 Query: 313 IKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDG---RALEAVPTNYQTNVYDDL 369 IKVVQR+PVR++LDP++++ HPLR+GLS A VDIH +G A + + QT+VYD Sbjct: 324 IKVVQRLPVRVSLDPKELKDHPLRVGLSMEAKVDIHDEGGQSLASTSATSPLQTSVYDQA 383 Query: 370 GKQADAIVERIISDNA 385 G+ AD ++ II+ NA Sbjct: 384 GQDADQVIASIIATNA 399 >ref|YP_558199.1| major facilitator superfamily efflux pump membrane fusion protein [Burkholderia xenovorans LB400] gb|ABE30147.1| MFS efflux system, membrane fusion protein, EmrA subfamily [Burkholderia xenovorans LB400] Length = 413 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 244/389 (62%), Positives = 298/389 (76%), Gaps = 8/389 (2%) Query: 5 TTQQQPQANNN------GNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVG 58 +T QQP A N NGKRKR + LL +V+L+ A+A LY+FL ARF E+TDDAYV Sbjct: 2 STPQQPAATNTQPAQPANNGKRKRMMTLLVIVILIAAIAYGLYYFLVARFHEDTDDAYVN 61 Query: 59 GNVVQISAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQL 118 GNVVQI+ QV GTVVAV ADDTQ VKAG LV LD AD R+AL+QA+A LAQ VRQ R L Sbjct: 62 GNVVQITPQVTGTVVAVNADDTQTVKAGDPLVVLDPADARVALEQAEANLAQTVRQVRGL 121 Query: 119 FLNNDTLAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQAR 178 F +++ A VA S+L+RA++DL+RR +GAVSQE+++HARDAVKSA AA+D A+ Sbjct: 122 FADDNQYQAQVAQRQSDLSRAQDDLKRRLTVAQTGAVSQEEISHARDAVKSAQAAVDAAQ 181 Query: 179 AAAAANRALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIA 238 A+NRALT +T++ HPNV AA VR+AYL+ AR N+ APV+G+V+KRSVQVGQR++ Sbjct: 182 QQLASNRALTANTTIANHPNVQAAAAKVRDAYLSNARNNLPAPVTGYVAKRSVQVGQRVS 241 Query: 239 AGNPLMAIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGG 298 G PLMAIVPL +W+DANFKE QL+H+RIGQPVE+ ADVYGSSV + G V+GFSAGTG Sbjct: 242 PGTPLMAIVPLGGVWVDANFKEVQLKHMRIGQPVELTADVYGSSVVFHGKVVGFSAGTGS 301 Query: 299 AFSLLPAQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD--GRALEA 356 AFSLLPAQNATGNWIKVVQR+PVRIALDP+++ HPLRIGLS A V I D G+ EA Sbjct: 302 AFSLLPAQNATGNWIKVVQRLPVRIALDPKELEQHPLRIGLSMQADVTIKDDNGGQLGEA 361 Query: 357 VPTNYQTNVYDDLGKQADAIVERIISDNA 385 T YQTNV++ G QADA + RIIS+NA Sbjct: 362 PNTVYQTNVFEKYGDQADAEIARIISENA 390 >ref|YP_726761.1| multidrug efflux membrane fusion protein [Ralstonia eutropha H16] emb|CAJ93393.1| multidrug efflux membrane fusion protein [Ralstonia eutropha H16] Length = 418 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/399 (57%), Positives = 305/399 (76%), Gaps = 7/399 (1%) Query: 8 QQPQANNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGNVVQISAQ 67 QQ A N NGKRKR L+ LT ++V + +YW ++AR FE TDDAYV GNVVQ++ Sbjct: 18 QQAPATTNNNGKRKRMLLSLTAAIVVAGIGYGVYWGMYARHFENTDDAYVAGNVVQVTPL 77 Query: 68 VGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNNDTLAA 127 VGGTVV++ ADDTQ+V AGQ L+ LD AD+++AL+QA+A LAQAVR+ R L++NN +LAA Sbjct: 78 VGGTVVSISADDTQLVTAGQPLIQLDRADSQVALEQAEAQLAQAVREVRTLYVNNGSLAA 137 Query: 128 NVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAAAAANRAL 187 NVA ++++A+AR+DL+RRQA SGAVS E+++HA+ A+K A +AL AR A+N+ L Sbjct: 138 NVALREADVAKARDDLRRRQAIAGSGAVSNEEISHAQSALKGAESALLAAREQLASNKVL 197 Query: 188 TDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIV 247 TD T+V +HPNV +AA ++R+AYL++AR + APV+G+V+KRSVQVGQR+AAG PLMA+V Sbjct: 198 TDQTTVEKHPNVQRAAASLRSAYLSFARSAMPAPVTGYVAKRSVQVGQRVAAGAPLMAVV 257 Query: 248 PLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQN 307 PL+Q+W+DANFKE Q+ H+RIGQPV + ADVYGS V+Y+G V GFSAGTG AFSLLPAQN Sbjct: 258 PLDQVWVDANFKEVQITHMRIGQPVTLEADVYGSKVEYQGKVAGFSAGTGSAFSLLPAQN 317 Query: 308 ATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDI---HGDGRALEAVPTNYQTN 364 ATGNWIKVVQR+PVRIALDP+Q++ HPLR+GLS T VD+ G A A QT+ Sbjct: 318 ATGNWIKVVQRLPVRIALDPQQLKDHPLRVGLSMTVKVDVRREEGAAMAPAAPAKPMQTD 377 Query: 365 VYDDLGKQADAIVERIISDN----ASGLPQAHKSKAAAA 399 VYD + + AD ++ RII+ N ++GLP A + A A Sbjct: 378 VYDKVAQDADQLIARIIAANNGGRSTGLPSASAANAKPA 416 >ref|YP_002911811.1| efflux pump membrane protein [Burkholderia glumae BGR1] gb|ACR29107.1| Efflux pump membrane protein [Burkholderia glumae BGR1] Length = 405 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 243/399 (60%), Positives = 299/399 (74%), Gaps = 8/399 (2%) Query: 10 PQANNNG-----NGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGNVVQI 64 PQ N G N KRKR + +L ++++ A+A +Y+FL ARF E TDDAYV GNVVQI Sbjct: 4 PQQNAAGAARPNNTKRKRMMTILIALIVLAAIAYGVYYFLVARFHETTDDAYVNGNVVQI 63 Query: 65 SAQVGGTVVAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNNDT 124 + QV GTV+AV ADDTQ V AG LV LD AD R+AL QA+A LAQ VRQ R LF+N+D Sbjct: 64 TPQVTGTVIAVNADDTQTVTAGAPLVVLDPADARVALQQAEANLAQTVRQVRGLFVNDDQ 123 Query: 125 LAANVAAADSNLARAREDLQRRQAGLSSGAVSQEDVAHARDAVKSAVAALDQARAAAAAN 184 A VA +++L++A++DL+RR A +GAVSQE++AHARDAVK+A A++D AR A+N Sbjct: 124 YRAQVALRETDLSKAQDDLRRRLAVAQTGAVSQEEIAHARDAVKAAQASVDAARQQLASN 183 Query: 185 RALTDHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLM 244 RALT +T+V +HPNVL AA VR+AYL AR + APV+G+V+KRSVQVGQR+A G PLM Sbjct: 184 RALTANTTVADHPNVLAAAAKVRDAYLANARNMLPAPVTGYVAKRSVQVGQRVAPGTPLM 243 Query: 245 AIVPLEQIWIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLP 304 ++VPL +W++ANFKE QL H+RIGQPVE+ AD+YGSSVKY G V+GFSAGTG AFSLLP Sbjct: 244 SVVPLNGVWVEANFKEVQLTHMRIGQPVELTADIYGSSVKYHGKVVGFSAGTGSAFSLLP 303 Query: 305 AQNATGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD-GRALEAVP-TNYQ 362 AQNATGNWIKVVQR+PVRIALDP+Q++ HPLRIGLS VDI D G L VP T YQ Sbjct: 304 AQNATGNWIKVVQRLPVRIALDPQQLQQHPLRIGLSMQVDVDIKDDSGGELGKVPNTVYQ 363 Query: 363 TNVYDDLGKQADAIVERIISDNASG-LPQAHKSKAAAAP 400 T+V+ G ADA + RII+ NA G P A K A AAP Sbjct: 364 TDVFAKYGDAADAEIARIIAQNAGGATPAATKPGAGAAP 402