BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0187.p (478 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISF1.1 D8ISF1_HERSS Cholera toxin secretion EpsM protein 951 0.0 F1VYJ6.1 F1VYJ6_9BURK Putative uncharacterized protein 411 e-112 A6SVN0.1 A6SVN0_JANMA Uncharacterized conserved protein 407 e-111 A4G326.1 A4G326_HERAR Putative exopolysaccharide biosynthesis pr... 379 e-103 E4QJF8.1 E4QJF8_METS6 O-antigen polymerase 326 4e-87 E1MR40.1 E1MR40_9GAMM O-antigen polymerase 311 1e-82 D7DLF6.1 D7DLF6_METS0 O-antigen polymerase 301 2e-79 C6X6S6.1 C6X6S6_METSD O-antigen polymerase 299 6e-79 Q83VQ8.1 Q83VQ8_9PROT EpsM 274 2e-71 D6CP64.1 D6CP64_THIS3 Putative O-antigen polymerase (EpsM) 236 6e-60 >D8ISF1.1 D8ISF1_HERSS Cholera toxin secretion EpsM protein Length = 478 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/478 (100%), Positives = 478/478 (100%) Query: 1 MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK 60 MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK Sbjct: 1 MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK 60 Query: 61 LLLLLIFLFRASGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWL 120 LLLLLIFLFRASGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWL Sbjct: 61 LLLLLIFLFRASGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWL 120 Query: 121 VLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVP 180 VLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVP Sbjct: 121 VLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVP 180 Query: 181 ALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFA 240 ALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFA Sbjct: 181 ALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFA 240 Query: 241 LMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERV 300 LMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERV Sbjct: 241 LMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERV 300 Query: 301 MQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTT 360 MQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTT Sbjct: 301 MQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTT 360 Query: 361 KWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSA 420 KWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSA Sbjct: 361 KWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSA 420 Query: 421 SDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHRAAMPGLRHPEPSN 478 SDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHRAAMPGLRHPEPSN Sbjct: 421 SDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHRAAMPGLRHPEPSN 478 >F1VYJ6.1 F1VYJ6_9BURK Putative uncharacterized protein Length = 472 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 218/428 (50%), Positives = 311/428 (72%), Gaps = 5/428 (1%) Query: 19 LVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRKLLLLLIFLFRASGDIVLE 78 L+++L+G A+P+ + L+G V L P L + F+RKL++L I LFR+ GD++L Sbjct: 30 LMALLIGAAMPIYVGLMGSKVTNLLIPPILLLFVIFLAFDRKLIILAIILFRSVGDVLLN 89 Query: 79 STRVG-GGM--GLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWLVLLAVASAGVLISPD 135 ST+ GGM G+GA IN ++++IA L V+EKPK P+ +A+ WL +A+A GV+ SP+ Sbjct: 90 STKTSIGGMSIGIGALINIVVLMIALLLVLEKPKLFPKKLALFWLPFMAIALFGVVQSPE 149 Query: 136 RVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGIVATGLYGRGG 195 +V AI+ L+L SYFA+F+ A Y+VRTP DF ++L++ SS++P +YGIV L+ RGG Sbjct: 150 KVDAIRTYLTLISYFAIFIIAVYLVRTPADFNKSIRLVVWSSVIPVIYGIVDAVLHMRGG 209 Query: 196 LANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFALMGYMLLLFVLLLLT 255 +FRLQ TF HPNI AFYL LVISL LY++K+ L F RF + ML++ V LLLT Sbjct: 210 --SFRLQGTFSHPNIFAFYLVLVISLSLYLIKTKIAPLKNFGRFCVSFNMLVMLVQLLLT 267 Query: 256 QTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERVMQLDSGNTVQTYAKL 315 QTRSAW+A F++ L Y ++FER+YLIYL++LP++ +L+PSV++R+ LDS N V YA+L Sbjct: 268 QTRSAWVACFLIFLFYAIIFERKYLIYLSLLPVVVLLIPSVRDRLANLDSSNEVYQYAEL 327 Query: 316 NSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTTKWGAHSVFVQWFFDT 375 NSF+WRV LWES L+WM + Y+ GYG+++FP++S+TFF AG WGAH+V++Q F+T Sbjct: 328 NSFSWRVSLWESALRWMEAAKYIAGYGLDAFPFHSRTFFLKAGAINWGAHNVYIQLIFET 387 Query: 376 GLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSASDNLLSYLAFNWYFW 435 GLIG+L++L++F V R L L++++ LG IL+ + EYLVVSASDN L+YL FNWYFW Sbjct: 388 GLIGLLSFLALFVNVARHLRGLFKIEPLGFFILLSLISEYLVVSASDNTLAYLVFNWYFW 447 Query: 436 LLLGMGCS 443 +G GCS Sbjct: 448 FAIGAGCS 455 >A6SVN0.1 A6SVN0_JANMA Uncharacterized conserved protein Length = 471 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/465 (50%), Positives = 319/465 (68%), Gaps = 6/465 (1%) Query: 3 RYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRKLL 62 R+ ++ Q + A +++++L G+ +P ++ + RLAALPA V G L +FNR LL Sbjct: 2 RWLPNQGQAHTVLAVIVLALLAGVLVPFYAEVMDYKLARLAALPAFLVFGMLLVFNRMLL 61 Query: 63 LLLIFLFRASGDIVLESTR--VGG-GMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPW 119 L LI +FR+ GD+VLESTR +GG GLG IN +IL+A + V+E+P+QLP+ M + W Sbjct: 62 LTLIIVFRSVGDVVLESTRFSIGGYTTGLGGVINLCVILLACMLVMERPQQLPKKMTLAW 121 Query: 120 LVLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIV 179 L L A GV ISP++ AI+ L+L SYFA+FV AFY VR+ +DFR V+L++ SS++ Sbjct: 122 LPFLLAALFGVAISPEKGDAIRTYLTLLSYFAMFVSAFYFVRSAQDFRYCVRLVLWSSLL 181 Query: 180 PALYGIVATGLYGRGGLAN-FRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKR 238 PALY +V L G GG FRLQSTF HPNI AFYLTLVI L L+ LK +L+ R Sbjct: 182 PALYALVDVALRGGGGGPEGFRLQSTFTHPNIFAFYLTLVIPLTLFTLKDKATQLSGGMR 241 Query: 239 FALMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQE 298 AL Y L LL+LTQTRSAWIA + + Y L+FERRYL+YL +LP++A+LVP +++ Sbjct: 242 VALTLYFFYLLALLVLTQTRSAWIACLFVFIGYALLFERRYLLYLMLLPVVALLVPEIRD 301 Query: 299 RVMQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAG 358 R++ L SG YAKLNSFAWR+ +WESGL+WM PSHYL GYGVE+F ++SQTFFP A Sbjct: 302 RLLDLGSGTEAVGYAKLNSFAWRLSIWESGLQWMRPSHYLYGYGVEAFRHFSQTFFPAAN 361 Query: 359 TTKWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVV 418 WGAH+V+VQWFFD G+IG+ AYL ++ ++ L L R+D+L A I I ++ YLVV Sbjct: 362 KMNWGAHNVYVQWFFDAGVIGLCAYLFLYARMVLTLKSLLRVDKLAAFITISIVLVYLVV 421 Query: 419 SASDNLLSYLAFNWYFWLLLGMGC--SVYMNSEAWQEELRQRKAR 461 S+SDN+ YL FNWYFW ++G C +V SE ++++A+ Sbjct: 422 SSSDNMFGYLVFNWYFWFVIGAACALTVLTASEPTVTVNKRQQAQ 466 >A4G326.1 A4G326_HERAR Putative exopolysaccharide biosynthesis protein EpsM-like Length = 491 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/456 (50%), Positives = 311/456 (68%), Gaps = 9/456 (1%) Query: 18 VLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRKLLLLLIFLFRASGDIVL 77 V +++ +G+ +P L+ RL ALPA+ V G L LFNR LLL LI +FR++GD++L Sbjct: 36 VALALAIGVIVPFYAELMDYKPARLLALPAVLVFGLLLLFNRMLLLALIIVFRSAGDVIL 95 Query: 78 ESTR--VGG-GMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWLVLLAVASAGVLISP 134 +STR +GG G+G IN +I++A + V EKP +LP+ M + WL L VA G++ISP Sbjct: 96 DSTRFSIGGYETGIGGLINLCVIMLACMLVFEKPSRLPKKMTLAWLPFLLVALFGLMISP 155 Query: 135 DRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGIVATGLYGRG 194 ++ AI+ L+L SYF++F+ AFY VR+ +DFR VKL++ SS +PA Y +V L+G Sbjct: 156 EKGDAIRSYLTLLSYFSMFIIAFYFVRSAQDFRRCVKLVLWSSTLPAAYALVDIALHGAA 215 Query: 195 GLAN-----FRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFALMGYMLLLF 249 G FRLQSTF HPNI AFYLTL+I L LYVLK Q R AL Y+ L Sbjct: 216 GGMAGGAEGFRLQSTFTHPNIFAFYLTLIIPLTLYVLKDKTVVPGQGSRIALTLYLFYLL 275 Query: 250 VLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERVMQLDSGNTV 309 LL+LTQTRSAW+A + Y L+FERRYL+YL +LP++A+LVP ++ER++ L SG T Sbjct: 276 ALLVLTQTRSAWLACMISFFAYALLFERRYLLYLMLLPVVALLVPEIRERLLDLGSGTTA 335 Query: 310 QTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTTKWGAHSVFV 369 YAKLNSFAWR+ +WESGL+WM PSHYL GYG+E+F +YSQTFFP A WGAH+V+V Sbjct: 336 VAYAKLNSFAWRLSIWESGLQWMRPSHYLFGYGLEAFRHYSQTFFPAANHMNWGAHNVYV 395 Query: 370 QWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSASDNLLSYLA 429 QWFFD G++G+LAYL ++ V L L R+DRL A + + + YL+VS+SDN+ YL Sbjct: 396 QWFFDAGMVGLLAYLWLYARVALMLKSLMRIDRLAAFVTLALVFSYLIVSSSDNIFGYLV 455 Query: 430 FNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHR 465 FNWYFW +G+GC++ S A + R+ARPL + Sbjct: 456 FNWYFWFSVGIGCAL-AASVALPDNKAGRQARPLEQ 490 >E4QJF8.1 E4QJF8_METS6 O-antigen polymerase Length = 465 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 190/440 (43%), Positives = 282/440 (64%), Gaps = 9/440 (2%) Query: 22 ILVGMALPVA-IALLGDSVGRLAALPALFVLGGLFLFNRKLLLLLIFLFRASGDIVLEST 80 IL+ A A + + G+ L A+PA +LG LF+ ++ LLLLLI +FR+ D +L++T Sbjct: 25 ILIAGAFSSAFVDIAGNKYALLLAVPAAILLGILFVVDKYLLLLLILIFRSGLDAILDNT 84 Query: 81 RVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWLVLLAVASAGVLISPDRVAAI 140 ++G GLGA +N L+++I + K + + V WL L + GV+ +P+ ++ Sbjct: 85 KLGP-FGLGAVLNALVLIIGLFAMYRMEKSQRKLVVVVWLPFLIMYGIGVVKAPEIFLSV 143 Query: 141 KIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGIVATGLYGRGGLANFR 200 K+ LSL S AVF Y+V+T +DF +K+++ SS++P YG+++ L+ +G N R Sbjct: 144 KLYLSLISTAAVFALGIYLVKTHQDFYKWMKVIVMSSLIPVGYGLLSIALHLKGFNGN-R 202 Query: 201 LQSTFGHPNILAFYLTLVISLGLYVLKSP--FFRLTQFKRFALMGYMLLLFVLLLLTQTR 258 L+STF HPNILAFYLTL+IS+G Y+ K+ F K F Y+++L +LL TQTR Sbjct: 203 LESTFDHPNILAFYLTLIISVGFYLWKADAQVFGPRVKKLFPF--YLIVLIGMLLATQTR 260 Query: 259 SAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERVMQLDSGNTVQTYAKLNSF 318 SAWI ++LYGL FER+YL + LP++A ++P V++R++ L+SGN V YAKLNSF Sbjct: 261 SAWIGFGTGLVLYGLFFERKYLFVVITLPIIAFMIPEVRDRILDLNSGNEVVAYAKLNSF 320 Query: 319 AWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTTKWGAHSVFVQWFFDTGLI 378 AWR Y+WES + WM P+ YLTGYG E F YYS FFPL+G K GAH+V+V+ FFD G+ Sbjct: 321 AWRKYIWESAINWMEPAKYLTGYGSEGFMYYSVIFFPLSGGFKTGAHNVYVELFFDLGIF 380 Query: 379 GMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSASDNLLSYLAFNWYFWLLL 438 G+LAY+++F K+ L + L + I I L++Y + S SDN+L YL+FNWYFW + Sbjct: 381 GVLAYITLFAASAFKIFPLRKAKLLLSGIAILQLLQYCLYSYSDNMLFYLSFNWYFWFFI 440 Query: 439 GM--GCSVYMNSEAWQEELR 456 G+ G + + E E ++ Sbjct: 441 GLVVGLNTLIKKERDSESIQ 460 >E1MR40.1 E1MR40_9GAMM O-antigen polymerase Length = 463 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 186/445 (41%), Positives = 282/445 (63%), Gaps = 9/445 (2%) Query: 16 AAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRKLLLLLIFLFRASGDI 75 AA+L ++ G+ V + + G+ + L ALP + ++G LF+FNR LL LI L R + D Sbjct: 20 AAILAALFFGVFSVVFVEMFGEKLSLLMALPVVMIIGLLFVFNRYLLFTLILLLRPALDP 79 Query: 76 VLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWLVLLAVASAGVLISPD 135 +LE T++GG +N L+I+IA L +++K QL + W+ L V V +PD Sbjct: 80 ILEKTKIGGLGVG-GVLNALVIIIALLAIIQKDFQLRSILIRTWVPFLLVLLIAVGFAPD 138 Query: 136 RVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGIVATGLYGRGG 195 A+K LSL S A+F A +V+T D+ +++++ SS++P YG V Y GG Sbjct: 139 FTHAVKSYLSLISNAAMFALALTLVKTQTDYGRWMRIVLLSSLIPVFYGFVD---YATGG 195 Query: 196 L----ANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFALMGYMLLLFVL 251 + A R+ STF HPNILAFYL L+I+L Y +KS + + L Y++++ L Sbjct: 196 VVYADAGKRVASTFSHPNILAFYLVLIITLSFYFIKSKVTYIPPSVKRLLPLYIIMMIAL 255 Query: 252 LLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERVMQLDSGNTVQT 311 LL T+TRSAW+ F+ LYGL++ER+YL+++ + P++A+L+P +Q+R++ L GN V T Sbjct: 256 LLFTKTRSAWVVCFVFFTLYGLLYERKYLLFVIVSPLVALLIPEMQDRIIDLTQGNEVVT 315 Query: 312 YAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTTKWGAHSVFVQW 371 Y LNS+AWR Y+WES L WM PSHY GYG+ESF +YS FFPLAG + GAH+V+VQ Sbjct: 316 YGTLNSYAWRKYIWESSLSWMQPSHYFLGYGLESFMHYSIDFFPLAGNMETGAHNVYVQL 375 Query: 372 FFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSASDNLLSYLAFN 431 FDTG++G+L+++ ++ V L + Y+ ++L + I L +Y +++ SDN+LSYLAFN Sbjct: 376 IFDTGVVGLLSFVWLYGSVAFYLAQFYKANKLMIFLAIMLLCQYGLLAYSDNMLSYLAFN 435 Query: 432 WYFWLLLGMGCSV-YMNSEAWQEEL 455 WYFW +LG S+ Y + + Q E+ Sbjct: 436 WYFWFVLGATYSIAYHDKKRLQNEV 460 >D7DLF6.1 D7DLF6_METS0 O-antigen polymerase Length = 468 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 175/453 (38%), Positives = 280/453 (61%), Gaps = 5/453 (1%) Query: 17 AVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRKLLLLLIFLFRASGDIV 76 + +++ +G + + +GD+ G L A+PA ++G LF F+R LL LI LFR+ D + Sbjct: 19 GLFITLFIGTFVALFGTAVGDNYGILLAVPATLIIGFLFFFDRYLLFFLILLFRSGIDQL 78 Query: 77 LESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWLVLLAVASAGVLISPDR 136 L++TR+G GLGA +N L+I+IAF+ + E+P + + + WL L++A +LI+P+ Sbjct: 79 LDATRLGS-FGLGAVLNALVIIIAFIAIFERPNPVRKVIKQTWLPFLSIAFFTLLITPEP 137 Query: 137 VAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGIVA--TGLYGRG 194 + A+K LSL SY ++F A ++++ ED+ ++++ SS++P Y + G + Sbjct: 138 LNAVKSFLSLLSYASIFTLAITLIKSEEDYGRWMRVVFLSSLIPVAYSFIDILNGGFHSQ 197 Query: 195 GLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFALMGYMLLLFVLLLL 254 FR+ STF HPNI AFYL L+ISLG Y K+ + F R L Y+L++ LL+L Sbjct: 198 ESEGFRINSTFSHPNIFAFYLVLMISLGFYFYKAKVSYFSVFIRKTLPVYILIMLGLLIL 257 Query: 255 TQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERVMQLDSGNTVQTYAK 314 T+TRSAW A F +Y L++ER+YLIY+ + P++ ++P V++R M L GN V Y+K Sbjct: 258 TKTRSAWAACFAFFTIYALIYERKYLIYILMAPIVGFMIPEVRDRFMDLAQGNEVVNYSK 317 Query: 315 LNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTTKWGAHSVFVQWFFD 374 LNS+AWR +WESGL +M SHY GYG+E F +YS FFP++ + AHSV+VQ F+ Sbjct: 318 LNSYAWRKLMWESGLNFMDISHYFFGYGLEGFRHYSVDFFPMSTGFQMNAHSVYVQLIFE 377 Query: 375 TGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSASDNLLSYLAFNWYF 434 TG G+ A++ + + V + L+ Y+ ++L I L+E+ + + SDN+L+YL+FNWY Sbjct: 378 TGGFGLAAFIWLHFRVGQLLVPFYKQNKLMIFSAIMFLLEFALDAYSDNMLAYLSFNWYL 437 Query: 435 WLLLGMGCSVYMNSEAWQEELRQRKARPLHRAA 467 W +LG +V N Q+ + + +A+ Sbjct: 438 WFVLGAAYAV--NYAKLQQSDENKATTQVAKAS 468 >C6X6S6.1 C6X6S6_METSD O-antigen polymerase Length = 442 Score = 299 bits (766), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 182/438 (41%), Positives = 271/438 (61%), Gaps = 12/438 (2%) Query: 12 LLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRKLLLLLIFLFRA 71 LLL A +++I++GM + V G L A+PA V+G +F+ +RK L +I + R+ Sbjct: 2 LLLVIAAILAIIMGMFVSVFADFAGRRPALLIAVPAALVVGLIFIISRKFLFSIILICRS 61 Query: 72 SGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWLVLLAVASAGVL 131 + D VL +T+VG +GA +NGLIILIA L ++ P+ R+ + WL+++ A V Sbjct: 62 ALDPVLATTKVGA-FSVGAGLNGLIILIASLAIIRTPQPALRYSSRLWLIVILTFFASVY 120 Query: 132 ISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGIVATGLY 191 SPD+V + K+ L++ A+F A +VR+ D++ + ++ ASSI+P LY + Sbjct: 121 FSPDKVNSFKLALNILCNAAIFTMAIVLVRSVSDYKKWILIIFASSIIPVLYSFIDIA-- 178 Query: 192 GRGGLAN---FRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFALMGYMLLL 248 RGG N FR+ STF HPNILAFYL L+IS+G Y+ KS +L K++ ++ + LL Sbjct: 179 -RGGFPNPHGFRISSTFSHPNILAFYLVLMISIGFYIWKS---KLLVEKKWLVILPVYLL 234 Query: 249 FVLLLL--TQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERVMQLDSG 306 +++LL T+TRSAW+ +Y ++ERRYL L +A+L+P +++R+ L G Sbjct: 235 VMVVLLLLTKTRSAWLGLAAFFFIYACLYERRYLFVLIGAACVALLIPEIRDRITDLGQG 294 Query: 307 NTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTTKWGAHS 366 N + LNS+AWR LW SGL WM SHYL GYG+ SF YYS TFFPLA W +HS Sbjct: 295 NEMAANQALNSYAWRKELWTSGLNWMEKSHYLFGYGLGSFNYYSITFFPLAAGKSWDSHS 354 Query: 367 VFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSASDNLLS 426 V+VQ F+ G IG LAY+ + + RK+ +++R + L I + LVEY + S SDN+L Sbjct: 355 VYVQLMFEVGAIGFLAYILMLIRLGRKIYEVWRRNSLVYFIALLLLVEYALFSYSDNMLF 414 Query: 427 YLAFNWYFWLLLGMGCSV 444 YL++NWYFW ++GM S+ Sbjct: 415 YLSYNWYFWFVMGMTYSL 432 >Q83VQ8.1 Q83VQ8_9PROT EpsM Length = 464 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 162/379 (42%), Positives = 234/379 (61%), Gaps = 19/379 (5%) Query: 70 RASGDIVLESTRVGGGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAVPWLVLLAVASAG 129 RAS D +L++T+ G +GLG +N L++LI L + + + L + + + WL L + G Sbjct: 67 RASLDHLLDTTKFAG-IGLGGLLNVLMVLIGLLALYKLERPLRKIVLLVWLPFLTMYFYG 125 Query: 130 VLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGIVA-- 187 V+ISP+++++ +I ++L S +F A YVV+T EDF +K++ S ++P +YG V Sbjct: 126 VVISPEKISSFRIFINLLSTAGMFAVALYVVKTREDFTKWLKIVFCSCLIPIMYGAVTIV 185 Query: 188 --TGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFKRFALMGYM 245 G Y L RL STF HPNILAFY L+I +G Y+ KS QF +L+ + Sbjct: 186 RPVGYY----LTEHRLASTFAHPNILAFYSVLMILIGFYLWKS-----QQFTEKSLLKKL 236 Query: 246 LLLFVL-----LLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQERV 300 L VL L+LTQTRSAW+A F Y L ER+Y+ L +LP++ + +P +++R+ Sbjct: 237 LPFIVLAMVGMLMLTQTRSAWVAFFAFFTFYALFMERKYIPVLLVLPVIGLAIPEIRDRL 296 Query: 301 MQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTT 360 + L SGN V YAKLNS+AWR YLW+S L WM S YLTGYG ++F +YS FFPL+ Sbjct: 297 LDLTSGNQVVAYAKLNSYAWRKYLWDSALHWMQVSKYLTGYGADAFLHYSPMFFPLSTDK 356 Query: 361 KWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYLVVSA 420 AH+V+VQ FFD GL G LAY+ +F+ + +++ D+L I + ++ YL+ S Sbjct: 357 PTAAHNVYVQTFFDLGLFGTLAYIWLFFKTGQTILRNVIHDKLLKTIALISIASYLMYSY 416 Query: 421 SDNLLSYLAFNWYFWLLLG 439 SDNLL YL FNWYFW LG Sbjct: 417 SDNLLGYLNFNWYFWFFLG 435 >D6CP64.1 D6CP64_THIS3 Putative O-antigen polymerase (EpsM) Length = 490 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 169/423 (39%), Positives = 238/423 (56%), Gaps = 9/423 (2%) Query: 37 DSVGRLA---ALPALFVLGGLFLFNRKLLLLLIFLFRASGDIVLESTRVGGGMGLGAAIN 93 D G A ALPA F+LG LF++ R+ LLLLI LFRA+ D +L T++GGG Sbjct: 41 DDRGHKALMIALPAAFILGLLFVYARETLLLLIILFRANLDPMLNMTKIGGGGAAIGLGG 100 Query: 94 GLIILIAFLFVVE--KPKQLP--RWMAVPWLVLLAVASAGVLISPDRVAAIKIVLSLCSY 149 L LI L VE +++P R M WL LL V + I+P V IK L+L S Sbjct: 101 LLNGLIIGLIAVELFNRRRIPVMRLMGQTWLPLLIVMVGTLAITPRLVPGIKNDLALLSN 160 Query: 150 FAVFVCAFYVVRTPEDFRSMVKLMIASSIVPALYGI--VATGLYGRGGLANFRLQSTFGH 207 A+F+ AF VR ++ ++ SSI P LYG +AT R+ STF H Sbjct: 161 AAIFLLAFVYVRDKASHDLWIRAVLLSSIGPLLYGFYQIATHQGFYDAEVGMRIDSTFSH 220 Query: 208 PNILAFYLTLVISLGLYVLKSPFFRLTQFKRFALMGYMLLLFVLLLLTQTRSAWIASFML 267 PNI AFYL L ISL V + + R L Y+LLL LL+ T+TRSAW A Sbjct: 221 PNIFAFYLVLQISLLFVVWRGGLLTVGLRVRRLLPLYILLLLFLLVTTKTRSAWGAMAFF 280 Query: 268 MLLYGLMFERRYLIYLAILPMLAMLVPSVQERVMQLDSGNTVQTYAKLNSFAWRVYLWES 327 L Y L+ ER+ L L + + ++L+P V+ER+ +L++GN+ Y LNSFAWR +W + Sbjct: 281 FLAYSLVMERKLLPLLILAGLASLLLPEVRERISELNTGNSGMYYQPLNSFAWRKEMWAA 340 Query: 328 GLKWMSPSHYLTGYGVESFPYYSQTFFPLAGTTKWGAHSVFVQWFFDTGLIGMLAYLSIF 387 L +M P HYL GYG ES+ +YS+ F+PLA AH+V++Q FFD GL G+ ++ + Sbjct: 341 ALHFMQPQHYLFGYGKESYEFYSRLFYPLANGVGPPAHNVYMQVFFDGGLAGLAGFVWLL 400 Query: 388 YMVLRKLMKLYRLDRLGAVILICTLVEYLVVSASDNLLSYLAFNWYFWLLLGMGCSVYMN 447 + + DR+ +L+ ++E+ +VS SDN+L YL +NWY W +LG G S++ + Sbjct: 401 IGTGALAASVRKTDRVEGFLLLMLVLEFALVSVSDNMLDYLVYNWYLWFVLGAGISLHFH 460 Query: 448 SEA 450 A Sbjct: 461 RTA 463