BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0132.p (286 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISA2.1 D8ISA2_HERSS DNA repair protein recO 583 e-164 A6SXR5.1 A6SXR5_JANMA DNA repair protein recO 399 e-109 A4G6R6.1 A4G6R6_HERAR DNA repair protein recO 387 e-105 F1W2X3.1 F1W2X3_9BURK DNA recombination and repair protein RecO 367 e-100 C3XAS8.1 C3XAS8_OXAFO DNA repair protein recO 336 2e-90 D8NL74.1 D8NL74_RALSO DNA repair protein recO 4 318 8e-85 D8NVK2.1 D8NVK2_RALSO DNA repair protein recO 5 317 1e-84 B9BBU4.1 B9BBU4_9BURK DNA repair protein recO 317 2e-84 D8NCP0.1 D8NCP0_RALSO DNA repair protein recO 3 315 4e-84 Q8Y0H9.1 RECO_RALSO DNA repair protein recO 315 4e-84 >D8ISA2.1 D8ISA2_HERSS DNA repair protein recO Length = 286 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 284/286 (99%), Positives = 284/286 (99%) Query: 1 MTTMLTESQLDSQADPANAVAPAVAPQAPAKTPARKTAAPRVRSRAVPEKEHKVLAQPGF 60 MTTMLTESQLDSQADPANAVAPAVAPQAPAKTPARKTAAPR RSRAVPEKEHKVLAQPGF Sbjct: 1 MTTMLTESQLDSQADPANAVAPAVAPQAPAKTPARKTAAPRARSRAVPEKEHKVLAQPGF 60 Query: 61 VLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRT 120 VLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRT Sbjct: 61 VLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRT 120 Query: 121 LTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPI 180 LTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPI Sbjct: 121 LTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPI 180 Query: 181 VLRQFERILLKQTGVAGNWSHCVASGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGKTL 240 VLRQFERILLKQTGVAGNWSHCV SGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGKTL Sbjct: 181 VLRQFERILLKQTGVAGNWSHCVVSGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGKTL 240 Query: 241 LDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 286 LDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL Sbjct: 241 LDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 286 >A6SXR5.1 A6SXR5_JANMA DNA repair protein recO Length = 287 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/256 (76%), Positives = 218/256 (85%), Gaps = 2/256 (0%) Query: 31 KTPARKTAAPRVRSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVALVAKG 90 KT AAPR R+R PEKE ++ QPGFVLHSYPYKETSLI+DVFSRDHGR+ALVAKG Sbjct: 34 KTAKSSKAAPR-RAR-TPEKEFRIADQPGFVLHSYPYKETSLIVDVFSRDHGRIALVAKG 91 Query: 91 AKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVK 150 AKRPHSKLRG LQTFQPLS+ WSGK+EVRTLT AEWVGGLLPLEKSALLCGFYLNELLVK Sbjct: 92 AKRPHSKLRGVLQTFQPLSVGWSGKAEVRTLTAAEWVGGLLPLEKSALLCGFYLNELLVK 151 Query: 151 LLAREDAHPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKTVR 210 LLAR+D HPALFDHYV+ LN+LAH E APIVLR+FER LLK+TGVA +W C ASGK + Sbjct: 152 LLARDDPHPALFDHYVSALNQLAHDEPAPIVLRKFERALLKETGVASDWRVCTASGKAIV 211 Query: 211 PDLIYVVDPEQGTRPERLSDRAPKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLAHHLG 270 + IYV+DPE+G RP R +D P+VSGKTLLDME EDY+D TQ QSKFLMR+LLAHHL Sbjct: 212 LEQIYVLDPERGPRPARPADVWPRVSGKTLLDMENEDYTDTQTQTQSKFLMRFLLAHHLN 271 Query: 271 GAQLNTRQILIDLMQL 286 GA LNTRQILIDL+QL Sbjct: 272 GAPLNTRQILIDLLQL 287 >A4G6R6.1 A4G6R6_HERAR DNA repair protein recO Length = 284 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/280 (69%), Positives = 225/280 (80%), Gaps = 12/280 (4%) Query: 7 ESQLDSQADPANAVAPAVAPQAPAKTPARKTAAPRVRSRAVPEKEHKVLAQPGFVLHSYP 66 + QL S D A V AV P AKT R+ PR EK+ ++ QPGFVLHSYP Sbjct: 17 DEQLASSGD-AGLVQTAVTP---AKTTTRR---PRTL-----EKDSRIAEQPGFVLHSYP 64 Query: 67 YKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDAEW 126 YKETSLI+DVF+RDHGR+ALVAKGAKRPHSKLRG LQTFQPLS+SWSGK+EVRTLT AEW Sbjct: 65 YKETSLIVDVFTRDHGRIALVAKGAKRPHSKLRGVLQTFQPLSVSWSGKAEVRTLTSAEW 124 Query: 127 VGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPIVLRQFE 186 VGGLLPLEKSALLCGFYLNELLVKLLAR+D+HPALF+HYV+ LN+LAH E A IVLR+FE Sbjct: 125 VGGLLPLEKSALLCGFYLNELLVKLLARDDSHPALFNHYVSALNQLAHDEPAAIVLRKFE 184 Query: 187 RILLKQTGVAGNWSHCVASGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGKTLLDMERE 246 R LLK++GV+G+W C A+ + + YVVDPE+G RP R +D P V+GKTLLDME+E Sbjct: 185 RALLKESGVSGDWKICTATRNPLLGGINYVVDPERGPRPARPADTWPHVAGKTLLDMEKE 244 Query: 247 DYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 286 DYSD TQ+QSKFLMR+LLAHHL GA LNTRQILIDL+QL Sbjct: 245 DYSDAATQMQSKFLMRFLLAHHLNGAPLNTRQILIDLLQL 284 >F1W2X3.1 F1W2X3_9BURK DNA recombination and repair protein RecO Length = 264 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 180/241 (74%), Positives = 202/241 (83%) Query: 46 AVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTF 105 A PEK ++ QPGFVLHSYP+KETSLIIDVF+R+HGR+ALVAKGAKRPHS LRG LQTF Sbjct: 24 ASPEKPVRIAGQPGFVLHSYPHKETSLIIDVFTREHGRIALVAKGAKRPHSALRGVLQTF 83 Query: 106 QPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHY 165 QPLSLSW+GKSE+RTLT AEWVGGLLPLEKSALLCGFYLNELLVKL+AR+D HP LFDHY Sbjct: 84 QPLSLSWTGKSEIRTLTAAEWVGGLLPLEKSALLCGFYLNELLVKLIARDDPHPGLFDHY 143 Query: 166 VATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKTVRPDLIYVVDPEQGTRP 225 V+ LN+LAHGE A IVLR+FE L+KQTGVA + S C + + V P YVVDPE+G R Sbjct: 144 VSALNQLAHGEAATIVLRKFELSLMKQTGVAADLSLCSGTREPVVPTSSYVVDPERGVRL 203 Query: 226 ERLSDRAPKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQ 285 R SD P+VSG+TLLDMEREDY+ TTQ QSKFLMR+LLAH LGG LNTRQILIDL Q Sbjct: 204 ARPSDIWPRVSGQTLLDMEREDYAGTTTQSQSKFLMRFLLAHQLGGVPLNTRQILIDLTQ 263 Query: 286 L 286 L Sbjct: 264 L 264 >C3XAS8.1 C3XAS8_OXAFO DNA repair protein recO Length = 265 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 167/260 (64%), Positives = 199/260 (76%), Gaps = 2/260 (0%) Query: 27 QAPAKTPARKTAAPRVRSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVAL 86 + AKT + KT P S EH+++ QPGFVLHSY YKE+SL++DVF+RD+GRVAL Sbjct: 8 EKTAKTGSVKT--PERSSSGKSGSEHRIVEQPGFVLHSYVYKESSLVVDVFTRDYGRVAL 65 Query: 87 VAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNE 146 VAKGAKRP S+LRG LQTFQPLS+ W+GKSE+RTLT AEW+GG++PLE SALL GFYLNE Sbjct: 66 VAKGAKRPTSRLRGVLQTFQPLSIGWTGKSELRTLTTAEWIGGMIPLENSALLYGFYLNE 125 Query: 147 LLVKLLAREDAHPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASG 206 LL+KL ARED H LFDHYV LN+LA E+A VLR FE LLK+TGVA + S + Sbjct: 126 LLLKLTAREDPHHLLFDHYVKALNRLATSESAQTVLRIFELALLKETGVAADLSIDTTTR 185 Query: 207 KTVRPDLIYVVDPEQGTRPERLSDRAPKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLA 266 + V P+ +YVVDPE G RP R+ D AP+++GKTLLDM EDYSD TQLQSK LMRYLLA Sbjct: 186 QKVDPEEVYVVDPENGPRPARMGDEAPRMAGKTLLDMVCEDYSDQQTQLQSKLLMRYLLA 245 Query: 267 HHLGGAQLNTRQILIDLMQL 286 HHL G L TR+IL+DL QL Sbjct: 246 HHLNGVPLQTRKILLDLRQL 265 >D8NL74.1 D8NL74_RALSO DNA repair protein recO 4 Length = 272 Score = 318 bits (814), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 163/251 (64%), Positives = 188/251 (74%), Gaps = 4/251 (1%) Query: 38 AAPRVRSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSK 97 AAPR + V EH+V QP FVLHSYPY+ETSLIIDVF+RDHGRVALVAKGAKRPHS Sbjct: 24 AAPR-KGFPVARAEHRVAQQPAFVLHSYPYRETSLIIDVFTRDHGRVALVAKGAKRPHSA 82 Query: 98 LRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDA 157 LR LQTFQPLSLSWSG+ EV+TLT AEWVGG+LPL LL GFYLNELLVK +ARED Sbjct: 83 LRAVLQTFQPLSLSWSGRGEVKTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDG 142 Query: 158 HPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKTVRPDLIYVV 217 HP LF HYV TLNKLAHGE LR FER+LL++TG A C+ G+ V+PD YV Sbjct: 143 HPVLFSHYVDTLNKLAHGEPVAFTLRAFERVLLRETGFAARLDRCI-DGEPVQPDGDYVY 201 Query: 218 DPEQGTRPERLSDRA--PKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLN 275 PE+G R + SD + P + G+TLLDMER+DYS P T QS+ LMR+LL +HL G L+ Sbjct: 202 HPERGIRRVQPSDPSSWPVLRGQTLLDMERDDYSRPVTATQSRSLMRFLLHYHLHGTPLS 261 Query: 276 TRQILIDLMQL 286 TRQILIDL +L Sbjct: 262 TRQILIDLQKL 272 >D8NVK2.1 D8NVK2_RALSO DNA repair protein recO 5 Length = 272 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 161/251 (64%), Positives = 187/251 (74%), Gaps = 4/251 (1%) Query: 38 AAPRVRSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSK 97 A PR +S EH+V QP FVLHSYPY+ETSLIIDVF+RDHGR+ALVAKGAKRPHS Sbjct: 24 AVPR-KSFPAARAEHRVAQQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSA 82 Query: 98 LRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDA 157 LR LQTFQPLSLSWSG+ EV+TLT AEWVGG+LPL LL GFYLNELLVK +ARED Sbjct: 83 LRAVLQTFQPLSLSWSGRGEVKTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDG 142 Query: 158 HPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKTVRPDLIYVV 217 HP LF HYV TLNKLAHGE LR FER+LL++TG A C+ G+ V+PD YV Sbjct: 143 HPVLFSHYVETLNKLAHGEPVAFTLRAFERVLLRETGFAAQLDRCI-DGEPVQPDGDYVY 201 Query: 218 DPEQGTRPERLSDRA--PKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLN 275 PE+G R + SD + P + G+TLLDMER+DYS P T QS+ LMR+LL +HL G L+ Sbjct: 202 HPERGIRRAQPSDPSSWPVLRGQTLLDMERDDYSRPATATQSRSLMRFLLHYHLHGTPLS 261 Query: 276 TRQILIDLMQL 286 TRQILIDL +L Sbjct: 262 TRQILIDLQKL 272 >B9BBU4.1 B9BBU4_9BURK DNA repair protein recO Length = 275 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/278 (61%), Positives = 195/278 (70%), Gaps = 9/278 (3%) Query: 11 DSQADPANAVAPAVAPQAPAKTPARKTAAPRVRSRAVPEKEHKVLAQPGFVLHSYPYKET 70 D+ A +AV A A AP P RKT R+ E +V QP FVLHSYPY+ET Sbjct: 5 DASASTEDAVT-AGANDAPLPAPPRKTRRATART-----SEFRVAEQPAFVLHSYPYRET 58 Query: 71 SLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGL 130 SLI+DV +RDHGR+ALVAKGAKRPHS LRG LQTFQPL LSWSGKSEVRTLT AEWVGG+ Sbjct: 59 SLIVDVLTRDHGRLALVAKGAKRPHSALRGVLQTFQPLLLSWSGKSEVRTLTGAEWVGGM 118 Query: 131 LPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENAPIVLRQFERILL 190 LPL ALLCGFY NELLVK ARED P LF+HYV TL +LAHGE A VLR FER+LL Sbjct: 119 LPLAGDALLCGFYANELLVKFCAREDPQPPLFNHYVLTLTRLAHGEPAVQVLRSFERVLL 178 Query: 191 KQTGVAGNWSHCVASGKTVRPDLIYVVDPEQGTRP--ERLSDRAPKVSGKTLLDMEREDY 248 ++TG A + VA + V PD YV DPE+G RP + + P VSG+TLLDME++DY Sbjct: 179 RETGYAMALNRTVAR-RAVEPDQRYVFDPERGVRPADDDVPSHWPIVSGQTLLDMEQDDY 237 Query: 249 SDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 286 P T QSK LMR+LL +LGG L TRQILIDL L Sbjct: 238 HRPQTVTQSKTLMRFLLNTYLGGTPLATRQILIDLQNL 275 >D8NCP0.1 D8NCP0_RALSO DNA repair protein recO 3 Length = 272 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/251 (64%), Positives = 186/251 (74%), Gaps = 4/251 (1%) Query: 38 AAPRVRSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSK 97 AAPR + EH+V QP FVLHSYPY+ETSLIIDVF+RDHGR+ALVAKGAKRPHS Sbjct: 24 AAPR-KGFPAARAEHRVSQQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSA 82 Query: 98 LRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDA 157 LR LQTFQPLSLSWSG+ EV+TLT AEWVGG+LPL LL GFYLNELLVK +ARED Sbjct: 83 LRAVLQTFQPLSLSWSGRGEVKTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDG 142 Query: 158 HPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKTVRPDLIYVV 217 HP LF HYV TLNKLAHGE LR FER+LL++TG A CV G+ V+PD YV Sbjct: 143 HPVLFSHYVETLNKLAHGEPVAFTLRAFERVLLRETGFAAQLDRCV-DGEPVQPDGDYVY 201 Query: 218 DPEQGTRPERLSDRA--PKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLN 275 PE+G R SD + P + G+TLLDMER+DYS P T QS+ LMR+LL +HL G L+ Sbjct: 202 HPERGIRRALPSDPSSWPVLRGQTLLDMERDDYSRPATATQSRSLMRFLLHYHLHGTPLS 261 Query: 276 TRQILIDLMQL 286 TRQILIDL +L Sbjct: 262 TRQILIDLQKL 272 >Q8Y0H9.1 RECO_RALSO DNA repair protein recO Length = 272 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 162/251 (64%), Positives = 186/251 (74%), Gaps = 4/251 (1%) Query: 38 AAPRVRSRAVPEKEHKVLAQPGFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSK 97 AAPR + EH+V QP FVLHSYPY+ETSLIIDVF+RDHGR+ALVAKGAKRPHS Sbjct: 24 AAPR-KGFPAARAEHRVSQQPAFVLHSYPYRETSLIIDVFTRDHGRIALVAKGAKRPHSA 82 Query: 98 LRGALQTFQPLSLSWSGKSEVRTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDA 157 LR LQTFQPLSLSWSG+ EV+TLT AEWVGG+LPL LL GFYLNELLVK +ARED Sbjct: 83 LRAVLQTFQPLSLSWSGRGEVKTLTRAEWVGGMLPLGGEGLLSGFYLNELLVKFVAREDG 142 Query: 158 HPALFDHYVATLNKLAHGENAPIVLRQFERILLKQTGVAGNWSHCVASGKTVRPDLIYVV 217 HP LF HYV TLNKLAHGE LR FER+LL++TG A CV G+ V+PD YV Sbjct: 143 HPVLFSHYVETLNKLAHGEPVAFTLRAFERVLLRETGFAAQLDRCV-DGEPVQPDGDYVY 201 Query: 218 DPEQGTRPERLSDRA--PKVSGKTLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLN 275 PE+G R SD + P + G+TLLDMER+DYS P T QS+ LMR+LL +HL G L+ Sbjct: 202 HPERGIRRALPSDPSSWPVLRGQTLLDMERDDYSRPATATQSRSLMRFLLHYHLHGTPLS 261 Query: 276 TRQILIDLMQL 286 TRQILIDL +L Sbjct: 262 TRQILIDLQKL 272