BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0123.p (175 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IS93.1 D8IS93_HERSS RNA polymerase sigma factor 357 4e-97 A6SXQ5.1 A6SXQ5_JANMA RNA polymerase sigma factor 335 2e-90 F1VU22.1 F1VU22_9BURK RNA polymerase sigma factor RpoE 332 2e-89 A4G6S6.1 A4G6S6_HERAR RNA polymerase sigma factor 331 2e-89 E1T5L4.1 E1T5L4_BURSG RNA polymerase sigma factor 301 2e-80 Q13VM1.1 Q13VM1_BURXL RNA polymerase sigma factor 301 2e-80 D5WAB6.1 D5WAB6_BURSC RNA polymerase sigma factor 301 2e-80 B2SZW6.1 B2SZW6_BURPP RNA polymerase sigma factor 301 2e-80 E8YL40.1 E8YL40_9BURK RNA polymerase sigma factor 301 2e-80 D5ND66.1 D5ND66_9BURK RNA polymerase sigma factor 301 2e-80 >D8IS93.1 D8IS93_HERSS RNA polymerase sigma factor Length = 200 Score = 357 bits (915), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK Sbjct: 26 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL Sbjct: 86 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW Sbjct: 146 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 200 >A6SXQ5.1 A6SXQ5_JANMA RNA polymerase sigma factor Length = 200 Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 161/175 (92%), Positives = 168/175 (96%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK Sbjct: 26 LVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLVT GRRAPTSTEAD EEAETFDD DHLRDINTPES+LATKQIAQT+N+AME LPEEL Sbjct: 86 NYLVTQGRRAPTSTEADVEEAETFDDGDHLRDINTPESLLATKQIAQTLNLAMEELPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 R AITLREIEGLSYDEIA++M CPIGTVRSRIFRAREAI+EKLRPLLDTA DKRW Sbjct: 146 RMAITLREIEGLSYDEIAESMGCPIGTVRSRIFRAREAISEKLRPLLDTALDKRW 200 >F1VU22.1 F1VU22_9BURK RNA polymerase sigma factor RpoE Length = 200 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 161/175 (92%), Positives = 169/175 (96%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQRKLMRLVSRLVRD AEAEDVVQEAFIKAYRALPQFRGD+AFYTWLYRIGINTAK Sbjct: 26 LVIKYQRKLMRLVSRLVRDHAEAEDVVQEAFIKAYRALPQFRGDAAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 N+LVT GRRAPTST+ADAEEAETF+DADHLRDINTPESMLATKQIA+TVNVAM ALPEEL Sbjct: 86 NFLVTQGRRAPTSTDADAEEAETFEDADHLRDINTPESMLATKQIAETVNVAMGALPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSYDEIADAM CPIGTVRSRIFRAREAIA++LRPLL TA DKRW Sbjct: 146 RTAITLREIEGLSYDEIADAMGCPIGTVRSRIFRAREAIADRLRPLLGTAIDKRW 200 >A4G6S6.1 A4G6S6_HERAR RNA polymerase sigma factor Length = 200 Score = 331 bits (848), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 160/175 (91%), Positives = 167/175 (95%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV+KYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK Sbjct: 26 LVIKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 85 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYLVT GRRAPTSTEAD EEAETFDD +HLRDINTPES+LATKQIAQT+N+AME LPEEL Sbjct: 86 NYLVTQGRRAPTSTEADIEEAETFDDGEHLRDINTPESLLATKQIAQTLNLAMEELPEEL 145 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 R AITLREIEGLSYDEIA +M CPIGTVRSRIFRAREAI+EKLRPLLDTA DKRW Sbjct: 146 RMAITLREIEGLSYDEIAVSMGCPIGTVRSRIFRAREAISEKLRPLLDTALDKRW 200 >E1T5L4.1 E1T5L4_BURSG RNA polymerase sigma factor Length = 199 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 156/175 (89%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M+CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMSCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >Q13VM1.1 Q13VM1_BURXL RNA polymerase sigma factor Length = 199 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >D5WAB6.1 D5WAB6_BURSC RNA polymerase sigma factor Length = 199 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >B2SZW6.1 B2SZW6_BURPP RNA polymerase sigma factor Length = 199 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >E8YL40.1 E8YL40_9BURK RNA polymerase sigma factor Length = 199 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199 >D5ND66.1 D5ND66_9BURK RNA polymerase sigma factor Length = 199 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/175 (82%), Positives = 155/175 (88%) Query: 1 LVVKYQRKLMRLVSRLVRDQAEAEDVVQEAFIKAYRALPQFRGDSAFYTWLYRIGINTAK 60 LV KY RK++RL+SRLVRD AE EDV Q+AFIKAYRALPQFRG+SAFYTWLYRI +NTAK Sbjct: 25 LVSKYHRKILRLISRLVRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAK 84 Query: 61 NYLVTMGRRAPTSTEADAEEAETFDDADHLRDINTPESMLATKQIAQTVNVAMEALPEEL 120 NYL T GRRAPTSTEADAEEAETF DAD LRDINTPESML +KQIA+TVN AM LPEEL Sbjct: 85 NYLATQGRRAPTSTEADAEEAETFSDADQLRDINTPESMLMSKQIAETVNAAMAVLPEEL 144 Query: 121 RTAITLREIEGLSYDEIADAMNCPIGTVRSRIFRAREAIAEKLRPLLDTAADKRW 175 RTAITLREIEGLSY+EIA+ M CPIGTVRSRIFRAREAIA KLRPLLDT KRW Sbjct: 145 RTAITLREIEGLSYEEIAEMMGCPIGTVRSRIFRAREAIAAKLRPLLDTPEGKRW 199