BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0122.p         (132 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IS92.1 D8IS92_HERSS Flagellar hook-length control protein           261   3e-68
A6SXQ4.1 A6SXQ4_JANMA Putative uncharacterized protein                 76   2e-12
C3X160.1 C3X160_OXAFO Putative uncharacterized protein                 70   1e-10
A4G6S7.1 A4G6S7_HERAR Putative uncharacterized protein                 69   3e-10

>D8IS92.1 D8IS92_HERSS Flagellar hook-length control protein
          Length = 166

 Score =  261 bits (667), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   VWLPGSWSWPARIALALACIIAAGVALLTVLRERKTIWLHISGTGQIRVVEHLLAASSRT 60
           VWLPGSWSWPARIALALACIIAAGVALLTVLRERKTIWLHISGTGQIRVVEHLLAASSRT
Sbjct: 35  VWLPGSWSWPARIALALACIIAAGVALLTVLRERKTIWLHISGTGQIRVVEHLLAASSRT 94

Query: 61  KPQVMSAGLAQLLAGSTIWPGMLFLRLRLESGKTRTIPVLSDSVSEDTFRALSVACRWLI 120
           KPQVMSAGLAQLLAGSTIWPGMLFLRLRLESGKTRTIPVLSDSVSEDTFRALSVACRWLI
Sbjct: 95  KPQVMSAGLAQLLAGSTIWPGMLFLRLRLESGKTRTIPVLSDSVSEDTFRALSVACRWLI 154

Query: 121 SHNTAKARMLEK 132
           SHNTAKARMLEK
Sbjct: 155 SHNTAKARMLEK 166


>A6SXQ4.1 A6SXQ4_JANMA Putative uncharacterized protein
          Length = 164

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 4/116 (3%)

Query: 5   GSWSWPARIALALACIIAAGVALLTVLRERKTIWLHISGTGQIRVVEHLLAASSRTKPQV 64
           G  S   R  LA+AC  +        L+  K   +HISG+GQIR    LLA         
Sbjct: 39  GDLSLMMRSLLAVACFASGSYVFFQTLKSGKIYKIHISGSGQIR----LLAKPEGGADLA 94

Query: 65  MSAGLAQLLAGSTIWPGMLFLRLRLESGKTRTIPVLSDSVSEDTFRALSVACRWLI 120
               L +LL  ST+WPG+L LRL+ E  +T  + +L DSVS ++FRAL VACRW++
Sbjct: 95  DEGELVELLPDSTLWPGLLLLRLQNEGLQTHNVVILPDSVSAESFRALLVACRWIV 150


>C3X160.1 C3X160_OXAFO Putative uncharacterized protein
          Length = 166

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 3   LPGSWSWPARIALALACIIAAGVALLTVLRERKTIWLHISGTGQIRVVEHLLAA--SSRT 60
           L G +    RI L  A + A  + +   +R RKT+ + ISG GQIR+ E+      +S  
Sbjct: 42  LLGEFVLYGRIWLTPAFLTAGLMLVFGYVRARKTLRIDISGNGQIRLKEYKGNEFDTSEK 101

Query: 61  KPQVMSAGLAQLLAGSTIWPGMLFLRLRLESGKTRTIPVLSDSVSEDTFRALSVACRWLI 120
           K       +  L+  STIWP ++ L L  ES     I +  DS+  D F+ L  ACRW+ 
Sbjct: 102 KNGFNDGNVWTLMENSTIWPWLIVLNLESESKNVSRILIFFDSMQPDDFKVLYAACRWID 161

Query: 121 SH 122
           +H
Sbjct: 162 AH 163


>A4G6S7.1 A4G6S7_HERAR Putative uncharacterized protein
          Length = 166

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 2/113 (1%)

Query: 11  ARIALALACIIAAGVALLTVLRERKTIWLHISGTGQIRVVEHLLAASSRTKPQVMSAGLA 70
           ARIAL + CI  A      V+  RK   +HISGTGQIR+++      S      +   + 
Sbjct: 45  ARIALTVMCIAVALHVFFHVMWRRKIYVIHISGTGQIRILQRQKNGPSGYDS--VEGEVV 102

Query: 71  QLLAGSTIWPGMLFLRLRLESGKTRTIPVLSDSVSEDTFRALSVACRWLISHN 123
            LL  ST+W G+L L L+ +  +T  + +L DSVS  +F+A+ +ACRW++S +
Sbjct: 103 HLLPVSTLWSGLLLLHLQNDQQQTVVVTILPDSVSPASFKAVLLACRWIVSRH 155