BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0050.p (236 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRA1.1 D8IRA1_HERSS Two component response regulator protein 483 e-135 E5UAD1.1 E5UAD1_ALCXX Putative uncharacterized protein 193 2e-47 E3HGU8.1 E3HGU8_ACHXA Response regulator 9 162 4e-38 E5U5Y9.1 E5U5Y9_ALCXX Putative uncharacterized protein 157 1e-36 D4XDH9.1 D4XDH9_9BURK Response regulator 155 4e-36 D1P573.1 D1P573_9ENTR DNA-binding response regulator PhoP 101 1e-19 E8TEY7.1 E8TEY7_MESCW Response regulator receiver 100 3e-19 B6XKM5.1 B6XKM5_9ENTR Putative uncharacterized protein 99 6e-19 Q05SJ3.1 Q05SJ3_9SYNE Two-component response regulator 97 2e-18 C6DFW4.1 C6DFW4_PECCP Two component transcriptional regulator, w... 97 2e-18 >D8IRA1.1 D8IRA1_HERSS Two component response regulator protein Length = 236 Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL Sbjct: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK Sbjct: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 Query: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL Sbjct: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLEP 236 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLEP Sbjct: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDIVLEP 236 >E5UAD1.1 E5UAD1_ALCXX Putative uncharacterized protein Length = 235 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 151/233 (64%), Gaps = 3/233 (1%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 M++L+VE +W +++S H+ LG+ C L A + +R R P+IL+T LPDG +L Sbjct: 1 MRILVVEDPPEWADTVSRHIAGLGHAVHTCGGLRDALDHIRQRAPEILVTGTPLPDGDML 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 +A+L + FP+MGIVVL A+ R+ ++R MSDG D+YL +PV+L ++ TL+AL RR+ Sbjct: 61 AHIAALHRTFPAMGIVVLAASPRINTQLRGMSDGVDHYLNKPVQLPLLAVTLSALERRLV 120 Query: 121 TVPHQSSPQSE-KWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDL 179 T ++P + W + S L S+ + T KE+ LA+L+QSP +P+SH ++ + Sbjct: 121 T--SSAAPSRDGAWTLDVESRELRSSDGQQVDLTAKEAIVLASLIQSPKFPISHERMSQI 178 Query: 180 LRSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSSVDI 232 L +D HRIDAL+YRVR+KL ++ +PMQIRNIY EG L++ R+ +V I Sbjct: 179 LGYPEIIFDKHRIDALLYRVRKKLGTIRGTPMQIRNIYAEGSLLVVRDITVSI 231 >E3HGU8.1 E3HGU8_ACHXA Response regulator 9 Length = 239 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 137/226 (60%), Gaps = 4/226 (1%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSV--CATLGQAREVLRGRQPDILLTDVGLPDGS 58 M ++IV+ DWR++++ ++ DLG + S+ +L + ++L P IL+ D LPDG Sbjct: 1 MTIIIVDDHGDWRDTIAEYIEDLGLDRSILTAGSLAELDQLLLTVTPGILVLDAMLPDGD 60 Query: 59 LLPELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARR 118 L ++ LR FPSMGI++LT E+++ +S GAD+YL +PV L E+ ATL +L+RR Sbjct: 61 ALTRVSHLRTSFPSMGIIMLTGRLLSEDKVSGLSLGADHYLTKPVNLAELGATLVSLSRR 120 Query: 119 MKTVP--HQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQL 176 ++ VP +P+S+ W F+ L S + TD ES + AL+Q+ P+S +L Sbjct: 121 LRVVPAGDADAPESDAWRFDPARRTLMSPQQVCVDITDTESRLIGALIQAAPLPLSRDRL 180 Query: 177 FDLLRSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFL 222 + L + E YD HR+DA ++R+R+KLR+ M IR +YG G++ Sbjct: 181 IEALGASVEAYDTHRLDAHMHRLRRKLRAHAGGDMGIRTVYGVGYV 226 >E5U5Y9.1 E5U5Y9_ALCXX Putative uncharacterized protein Length = 243 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSV--CATLGQAREVLRGRQPDILLTDVGLPDGS 58 + ++IV+ DWR++++ + DLG ++ +L + ++L P IL+ D LPDG Sbjct: 5 VTIIIVDDHGDWRDTIAEFIHDLGLGEAILTAGSLAELDQLLLSVTPGILVLDAMLPDGD 64 Query: 59 LLPELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARR 118 L ++ LR +PSMGI++LT E+++ +S GAD+YL +PV L E+ ATL +L+RR Sbjct: 65 GLARVSHLRTTYPSMGIIMLTGRLLSEDKVSGLSLGADHYLTKPVNLAELGATLVSLSRR 124 Query: 119 MKTVP--HQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQL 176 ++ VP +P +E W F+ L S + TD ES + AL+Q+ P+S G+L Sbjct: 125 LRVVPAVDPEAPSAEIWRFDPARRMLVSPKRVHVDITDTESRLIGALIQAAPLPLSRGRL 184 Query: 177 FDLLRSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFL 222 + L + E YD HR+DA ++R+R+KLR+ + M IR +YG G++ Sbjct: 185 VEALGASAEAYDTHRLDAHMHRLRRKLRAQAGADMGIRTVYGVGYV 230 >D4XDH9.1 D4XDH9_9BURK Response regulator Length = 249 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSV--CATLGQAREVLRGRQPDILLTDVGLPDGS 58 + +++V+ DWR+++ + DLG + ++ +L + ++L P IL+ D LPDG Sbjct: 11 VTIIVVDDHGDWRDTIVETIQDLGLDKAILTAGSLAELDKLLLTVTPGILVLDAMLPDGD 70 Query: 59 LLPELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARR 118 +A LR +PSMGI++LT E+++ +S GAD+YL +PV L E+ ATL +L+RR Sbjct: 71 AFTRIAHLRTCYPSMGIIMLTGRLLSEDKVSGLSLGADHYLTKPVNLAELGATLVSLSRR 130 Query: 119 MKTVPHQSSPQ--SEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQL 176 ++ VP + S+ W F+ L S +++ TD ES + AL+Q+ P+S G+L Sbjct: 131 LRVVPATGADDAPSDTWRFDPSRRTLVSPERISVELTDTESRLIGALIQAAPLPLSRGRL 190 Query: 177 FDLLRSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFL 222 + L + + YD HR+DA ++R+R+KLR+L M IR +YG G++ Sbjct: 191 VEALGASVDAYDTHRLDAHMHRLRRKLRALAGGDMGIRTVYGVGYV 236 >D1P573.1 D1P573_9ENTR DNA-binding response regulator PhoP Length = 224 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 M++LIVE + R+ L+ + DL ++ +A L PDI + D+GLPD L Sbjct: 1 MRILIVEDNALLRHHLTVQLKDLSHQVDSAEDAKEADYFLNESHPDIAVVDLGLPDEDGL 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 + R + ++ I+VLTA + +E+++ ++ GAD Y+ +P +LEE+ A + AL RR Sbjct: 61 SMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120 Query: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 + Q + E + + + NG +++ T E T + LL++ VS L L Sbjct: 121 GLASQ-VLELENFVIDLSRKEFTVNG-ESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQL 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGF 221 E ++H ID L+ R+R+K++ E + I + G+G+ Sbjct: 179 YPDAELRESHTIDVLMGRLRKKIQQFHEQEV-IVTVRGQGY 218 >E8TEY7.1 E8TEY7_MESCW Response regulator receiver Length = 231 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 3 VLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVL-RGRQPDILLTDVGLPDGSLLP 61 +LIVE + R L+ + G+ AT G+ R+ L G P +++ DVGLPDG+ Sbjct: 4 ILIVEDEPRLRKDLADFLELTGFTAEGVATAGELRQTLANGSSPAVIILDVGLPDGNGF- 62 Query: 62 ELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMKT 121 +LA+ + + GI++LTA ++RIR GAD YL + L E+ A + +L RR Sbjct: 63 DLATEIRKSHACGIIMLTALGDSDDRIRGFESGADIYLVKHSTLREIDAAIRSLLRRTGA 122 Query: 122 VPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLLR 181 P ++ S++W + + L + +L+ T E + L L +L+ Sbjct: 123 PPDSANGSSDRWVLDGTNWMLIAPNHRSLKLTAAEFAFMNVLCNRSGEICQREDLVELVA 182 Query: 182 SGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLM 223 +D +DA++ R+R+KL P I+ +YG G++ Sbjct: 183 RPRSNFDNRHLDAVVSRLRRKLEEHISLPAPIKVVYGVGYIF 224 >B6XKM5.1 B6XKM5_9ENTR Putative uncharacterized protein Length = 224 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 M++LIVE + R+ L+ + +LG++ +A L PDI + D+GLPD L Sbjct: 1 MRILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGLPDEDGL 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 + R + S+ ++VLTA + +E+++ ++ GAD Y+ +P +LEE+ A + AL RR Sbjct: 61 SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120 Query: 121 TVPHQSSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLL 180 + Q + E + + + NG +++ T E T + LL++ VS L L Sbjct: 121 GLASQ-VLELENFVIDLSRKEFTVNG-ESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQL 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGF 221 E ++H ID L+ R+R+K++ + I + G+G+ Sbjct: 179 YPDAELRESHTIDVLMGRLRKKIQQFHAQEV-IVTVRGQGY 218 >Q05SJ3.1 Q05SJ3_9SYNE Two-component response regulator Length = 236 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 3 VLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLLPE 62 + +V+ D D R + ++ D GY+ + + Q L ++PD+++ D+ +P L Sbjct: 2 IWVVDDDPDLRQMVGTYLIDQGYDVRCLSDVKQFEARLEFQRPDLVVLDLMMPGDDGLTA 61 Query: 63 LASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMKTV 122 L LR + +V+LTA +RI + GAD YL +P E+SA + A+ RR ++ Sbjct: 62 LRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLGKPFLPRELSARIDAVLRRRSSL 121 Query: 123 PHQSSPQSE-------KWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQ 175 P +P +E N + LS +GV A+ T E + LAA +Q P+ P+S + Sbjct: 122 P-AGTPLAEGGDVSFGDMVLNLSARTLSRDGVPAV-ITSGEFSLLAAFVQHPHRPLSRER 179 Query: 176 LFDLLRSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGFLML 224 L +L R G + D+ +D + RVR+ + P I+ ++G G++ + Sbjct: 180 LIELARGPGCDTDSRSMDVQVSRVRKLVEPDPSRPRYIQTVWGYGYVFV 228 >C6DFW4.1 C6DFW4_PECCP Two component transcriptional regulator, winged helix family Length = 229 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 1 MKVLIVESDLDWRNSLSAHMGDLGYETSVCATLGQAREVLRGRQPDILLTDVGLPDGSLL 60 M++L+VE ++ R+ L+ M ++G++ + +A L PDI + D+GLPD + Sbjct: 1 MRILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGLPDEDGM 60 Query: 61 PELASLRQHFPSMGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMK 120 + R H + I+VLTA + ++++ + GAD Y+ +P +EEV A L AL RR Sbjct: 61 SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120 Query: 121 TVPHQ--SSPQSEKWAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFD 178 + Q S P E +RR L +G + ++ T E T + L+++ VS L Sbjct: 121 GLASQVISLPPFE-IDLSRRE--LVIHG-SPIKLTAFEYTIIETLIRNKGKVVSKESLML 176 Query: 179 LLRSGGEEYDAHRIDALIYRVRQKLRSLEESPMQIRNIYGEGF 221 L E ++H ID L+ R+R+K++ E+P I + G+G+ Sbjct: 177 QLYPDAELRESHTIDVLMGRLRKKIQQ-AEAPDVITTVRGQGY 218