BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0028.p (236 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRC7.1 D8IRC7_HERSS Two component response regulator protein 468 e-130 C1D7X4.1 C1D7X4_LARHH KdpE 292 2e-77 B1FX82.1 B1FX82_9BURK Two component transcriptional regulator, w... 290 8e-77 B9Z381.1 B9Z381_9NEIS Two component transcriptional regulator, w... 288 3e-76 B5WHX5.1 B5WHX5_9BURK Two component transcriptional regulator, w... 288 4e-76 E1T3S1.1 E1T3S1_BURSG Two component transcriptional regulator, w... 288 5e-76 Q142K5.1 Q142K5_BURXL Two component transcriptional regulator, w... 287 7e-76 D5NJV6.1 D5NJV6_9BURK Two component transcriptional regulator, w... 287 7e-76 E8YI29.1 E8YI29_9BURK Two component transcriptional regulator, w... 287 8e-76 B2T2B6.1 B2T2B6_BURPP Two component transcriptional regulator, w... 285 3e-75 >D8IRC7.1 D8IRC7_HERSS Two component response regulator protein Length = 236 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/236 (99%), Positives = 235/236 (99%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP Sbjct: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL Sbjct: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 RRHA ASSAGQSSGRYRLG+VVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH Sbjct: 121 RRHARASSAGQSSGRYRLGDVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVAE 236 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVAE Sbjct: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVAE 236 >C1D7X4.1 C1D7X4_LARHH KdpE Length = 233 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 146/232 (62%), Positives = 179/232 (77%), Gaps = 2/232 (0%) Query: 4 HAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGD 63 + I+ +EDDP+IRK +R ALE EG V EA+S + G+ EA +R+PDL+++DLGLPDGD Sbjct: 2 NPSRILIVEDDPNIRKFLRVALEDEGHAVFEAESVKRGLIEAASRQPDLLVVDLGLPDGD 61 Query: 64 GKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRH 123 GKQ+I E+R+WSS +++LSAR QE+EKVEALDAGADDYL KPFG+PELLAR+R QLRR Sbjct: 62 GKQLIRELRSWSSAGVLVLSARDQEAEKVEALDAGADDYLAKPFGVPELLARVRVQLRRR 121 Query: 124 ACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQL 183 + A G SGRYR GEV VD+ R V R GE +HLT IE+RLLS LLR+ GRV+THRQL Sbjct: 122 SAAP--GAESGRYRFGEVEVDVSLREVRRGGEMVHLTPIEFRLLSVLLRNHGRVLTHRQL 179 Query: 184 LVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVVA 235 L WGP+H E HY+RIYM LRQKLE D AQP +LTE+ VGYR+A V A Sbjct: 180 LQEVWGPNHVERQHYVRIYMGNLRQKLEHDPAQPECLLTELQVGYRLAGVCA 231 >B1FX82.1 B1FX82_9BURK Two component transcriptional regulator, winged helix family Length = 232 Score = 290 bits (743), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 146/234 (62%), Positives = 175/234 (74%), Gaps = 2/234 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG VVH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRTALEDEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQESEKV ALDAGADDYL KPFG+ ELLAR+RA L Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHL 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 RR S + R G V VDL R V+R G A+HLT IEYRLL+TL+R AGRV+TH Sbjct: 121 RRR--NQGGANESSQVRFGAVSVDLALRQVTRDGAAIHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ VV Sbjct: 179 RQLLRDVWGPSHVESYHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRLVGVV 232 >B9Z381.1 B9Z381_9NEIS Two component transcriptional regulator, winged helix family Length = 227 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 145/223 (65%), Positives = 175/223 (78%), Gaps = 3/223 (1%) Query: 8 IVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLPDGDGKQV 67 ++ IEDDP IR+ +R+ALE EGF V EA S G+ EA TR+P+L+I+DLGLPD DG++V Sbjct: 6 LLIIEDDPQIRRFLRAALEAEGFAVFEADSGGRGLIEAATRQPELVIVDLGLPDMDGREV 65 Query: 68 ISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHACAS 127 I E+R WS+VPIV+LSAR QE EKV ALD GADDYLVKPFG+PELLAR+RAQLRR A A Sbjct: 66 IRELRGWSAVPIVVLSARHQEEEKVAALDQGADDYLVKPFGVPELLARLRAQLRRGATA- 124 Query: 128 SAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVAG 187 +AGQS R G+V VDLP R VSR G +HLT +EYRLLS L++ GRV+THRQLL+ Sbjct: 125 AAGQS--RISFGQVCVDLPQRRVSRAGTEVHLTPVEYRLLSALIKGQGRVLTHRQLLLDT 182 Query: 188 WGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRV 230 WGP + E HYLRIYM LRQKLE D +QP H+LTE+GVGYR+ Sbjct: 183 WGPDYVERPHYLRIYMGHLRQKLEDDPSQPKHLLTELGVGYRL 225 >B5WHX5.1 B5WHX5_9BURK Two component transcriptional regulator, winged helix family Length = 232 Score = 288 bits (737), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 147/236 (62%), Positives = 177/236 (75%), Gaps = 6/236 (2%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG V++A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDLSITVVLIEDEKQIRRFVRTALEAEGITVYDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQESEKV ALDAGADDYL KPFG+ ELLAR+RA L Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHL 120 Query: 121 RR--HACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVI 178 RR H AS + Q R GEV VDL R V+R G A+HLT IEYRLL+TL+R AGRV+ Sbjct: 121 RRRNHGGASESPQ----VRFGEVTVDLALRQVTRDGAAVHLTPIEYRLLATLVRHAGRVL 176 Query: 179 THRQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 THRQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 177 THRQLLRDVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRLVGAV 232 >E1T3S1.1 E1T3S1_BURSG Two component transcriptional regulator, winged helix family Length = 232 Score = 288 bits (737), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 145/233 (62%), Positives = 174/233 (74%), Gaps = 2/233 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG VVH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDLSTTVVLIEDEKQIRRFVRAALEGEGMVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQESEKV ALDAGADDYL KPFG+ ELLAR+RA L Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHL 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 RR S + R G V VDL R V+R G A+HLT IEYRLL+TL+R AGRV+TH Sbjct: 121 RRR--NQGGANESPQVRFGAVSVDLALRQVTRDGAAVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADV 233 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 179 RQLLRDVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRLVGV 231 >Q142K5.1 Q142K5_BURXL Two component transcriptional regulator, winged helix family Length = 232 Score = 287 bits (735), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 144/234 (61%), Positives = 174/234 (74%), Gaps = 2/234 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG VVH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MTDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQE+EKV ALDAGADDYL KPFG+ ELLAR+RA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQETEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 RR S + R G V VDL R VSR G A+HLT IEYRLL+TL+R AGRV+TH Sbjct: 121 RRR--NQGGANESPQVRFGTVTVDLALRQVSRDGAAVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 179 RQLLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGAV 232 >D5NJV6.1 D5NJV6_9BURK Two component transcriptional regulator, winged helix family Length = 232 Score = 287 bits (735), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 144/234 (61%), Positives = 174/234 (74%), Gaps = 2/234 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG VVH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQE+EKV ALDAGADDYL KPFG+ ELLAR+RA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQETEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 RR S + R G V VDL R VSR G A+HLT IEYRLL+TL+R AGRV+TH Sbjct: 121 RRR--NQGGANESPQVRFGTVTVDLALRQVSRDGAAVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 179 RQLLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGAV 232 >E8YI29.1 E8YI29_9BURK Two component transcriptional regulator, winged helix family Length = 232 Score = 287 bits (735), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 145/233 (62%), Positives = 175/233 (75%), Gaps = 2/233 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG VVH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRAALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQESEKV ALDAGADDYL KPFG+ ELLAR+RA L Sbjct: 61 DTDGLDVIRELRGWSEMPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHL 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 RR + S + R G V VDL R V+R G A+HLT IEYRLL+TL+R AGRV+TH Sbjct: 121 RRRNQGGAT--ESPQVRFGAVSVDLALRQVTREGAAVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADV 233 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ V Sbjct: 179 RQLLRDVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRLVGV 231 >B2T2B6.1 B2T2B6_BURPP Two component transcriptional regulator, winged helix family Length = 232 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 142/234 (60%), Positives = 173/234 (73%), Gaps = 2/234 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 M + + +V IED+ IR+ VR+ALE EG VVH+A++ ++G+ EA TRKPDL+I+DLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG VI E+R WS +P+++LSARTQESEKV ALDAGADDYL KPFG+ ELLAR+RA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRHACASSAGQSSGRYRLGEVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 RR + + R G V VDL R VSR G +HLT IEYRLL+TL+R AGRV+TH Sbjct: 121 RRR--NQGGANETPQVRFGTVTVDLALRQVSRDGAVVHLTPIEYRLLATLVRHAGRVLTH 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVADVV 234 RQLL WGPSH E HYLRIYM LR KLERD AQP HI+TE GVGYR+ + Sbjct: 179 RQLLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGAI 232